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Conserved domains on  [gi|15232212|ref|NP_191553|]
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Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

Protein Classification

F-box/kelch-repeat protein( domain architecture ID 17778853)

F-box/kelch-repeat protein may be a component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins

CATH:  1.20.1280.50|2.120.10.80
Gene Ontology:  GO:0006511|GO:0019005|GO:0005515|GO:0016567
PubMed:  10603472|31898225|11178263|31442578|24959344|10581972
SCOP:  4001927|3000448

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NanM super family cl34543
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
144-315 1.28e-16

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG3055:

Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 79.43  E-value: 1.28e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232212 144 ECVAIQDAGKVLLIGGWDPETlqPVRDVFVLDffageGSGRRFRRGRPMS-AARSFFACASVGStKVYVAGG---HDDQK 219
Cdd:COG3055  15 EAAAALLDGKVYVAGGLSGGS--ASNSFEVYD-----PATNTWSELAPLPgPPRHHAAAVAQDG-KLYVFGGftgANPSS 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232212 220 NALRSAEVYDVEKDEWSMLPPMTEGRDecHGFSMATDPGFCVLSGYgteTQGQFRSDGEIYDPITNSWSTIENVwpfpdl 299
Cdd:COG3055  87 TPLNDVYVYDPATNTWTKLAPMPTPRG--GATALLLDGKIYVVGGW---DDGGNVAWVEVYDPATGTWTQLAPL------ 155

                       170
                ....*....|....*.
gi 15232212 300 sPRGRTAAAAAEFPGD 315
Cdd:COG3055 156 -PTPRDHLAAAVLPDG 170
F-box_AtAFR-like cd22152
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ...
 15-59 1.10e-15

F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


:

Pssm-ID: 438923  Cd Length: 45  Bit Score: 70.68  E-value: 1.10e-15
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15232212  15 LIPGLPEELAIECLVRVPFQFHSSIKSVCRSWKCVISSRSFIKER 59
Cdd:cd22152   1 LIPGLPDDIALQCLARVPRSSHPSLSLVSKSWRSLLSSPELFRVR 45
 
Name Accession Description Interval E-value
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
144-315 1.28e-16

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 79.43  E-value: 1.28e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232212 144 ECVAIQDAGKVLLIGGWDPETlqPVRDVFVLDffageGSGRRFRRGRPMS-AARSFFACASVGStKVYVAGG---HDDQK 219
Cdd:COG3055  15 EAAAALLDGKVYVAGGLSGGS--ASNSFEVYD-----PATNTWSELAPLPgPPRHHAAAVAQDG-KLYVFGGftgANPSS 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232212 220 NALRSAEVYDVEKDEWSMLPPMTEGRDecHGFSMATDPGFCVLSGYgteTQGQFRSDGEIYDPITNSWSTIENVwpfpdl 299
Cdd:COG3055  87 TPLNDVYVYDPATNTWTKLAPMPTPRG--GATALLLDGKIYVVGGW---DDGGNVAWVEVYDPATGTWTQLAPL------ 155

                       170
                ....*....|....*.
gi 15232212 300 sPRGRTAAAAAEFPGD 315
Cdd:COG3055 156 -PTPRDHLAAAVLPDG 170
F-box_AtAFR-like cd22152
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ...
 15-59 1.10e-15

F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438923  Cd Length: 45  Bit Score: 70.68  E-value: 1.10e-15
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15232212  15 LIPGLPEELAIECLVRVPFQFHSSIKSVCRSWKCVISSRSFIKER 59
Cdd:cd22152   1 LIPGLPDDIALQCLARVPRSSHPSLSLVSKSWRSLLSSPELFRVR 45
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 195-242 2.05e-10

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 55.70  E-value: 2.05e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15232212   195 ARSFFACASVGsTKVYVAGGHDDQkNALRSAEVYDVEKDEWSMLPPMT 242
Cdd:pfam01344   1 RRSGAGVVVVG-GKIYVIGGFDGN-QSLNSVEVYDPETNTWSKLPSMP 46
Kelch smart00612
Kelch domain;
208-245 6.72e-10

Kelch domain;


Pssm-ID: 128874 [Multi-domain]  Cd Length: 47  Bit Score: 54.10  E-value: 6.72e-10
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 15232212    208 KVYVAGGHDDQkNALRSAEVYDVEKDEWSMLPPMTEGR 245
Cdd:smart00612   1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTPR 37
FBOX smart00256
A Receptor for Ubiquitination Targets;
19-59 4.70e-05

A Receptor for Ubiquitination Targets;


Pssm-ID: 197608  Cd Length: 41  Bit Score: 40.50  E-value: 4.70e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 15232212     19 LPEELAIECLVRVPFQFHSSIKSVCRSWKCVISSRSFIKER 59
Cdd:smart00256   1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 16-57 3.17e-04

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 37.90  E-value: 3.17e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15232212    16 IPGLPEELAIECLVRVPFQFHSSIKSVCRSWKCVISSRSFIK 57
Cdd:pfam00646   1 LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWK 42
PHA03098 PHA03098
kelch-like protein; Provisional
 121-296 3.00e-03

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 39.75  E-value: 3.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232212  121 SVYNATLDTWH------RVAIPERIPLFCECVAIQDaGKVLLIGGWDpETLQPVRDVFVLDFFageGSGRRFRRGRPMSA 194
Cdd:PHA03098 354 SISLNTVESWKpgeskwREEPPLIFPRYNPCVVNVN-NLIYVIGGIS-KNDELLKTVECFSLN---TNKWSKGSPLPISH 428

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232212  195 ARSffaCASVGSTKVYVAGG--HDDQKNALRSAEVYDVEKDEWSMLPPMTEGRdechgFSMAT---DPGFCVLSGYGTET 269
Cdd:PHA03098 429 YGG---CAIYHDGKIYVIGGisYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-----INASLcifNNKIYVVGGDKYEY 500

                        170       180
                 ....*....|....*....|....*..
gi 15232212  270 QgqfRSDGEIYDPITNSWSTIENVWPF 296
Cdd:PHA03098 501 Y---INEIEVYDDKTNTWTLFCKFPKV 524
 
Name Accession Description Interval E-value
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
144-315 1.28e-16

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 79.43  E-value: 1.28e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232212 144 ECVAIQDAGKVLLIGGWDPETlqPVRDVFVLDffageGSGRRFRRGRPMS-AARSFFACASVGStKVYVAGG---HDDQK 219
Cdd:COG3055  15 EAAAALLDGKVYVAGGLSGGS--ASNSFEVYD-----PATNTWSELAPLPgPPRHHAAAVAQDG-KLYVFGGftgANPSS 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232212 220 NALRSAEVYDVEKDEWSMLPPMTEGRDecHGFSMATDPGFCVLSGYgteTQGQFRSDGEIYDPITNSWSTIENVwpfpdl 299
Cdd:COG3055  87 TPLNDVYVYDPATNTWTKLAPMPTPRG--GATALLLDGKIYVVGGW---DDGGNVAWVEVYDPATGTWTQLAPL------ 155

                       170
                ....*....|....*.
gi 15232212 300 sPRGRTAAAAAEFPGD 315
Cdd:COG3055 156 -PTPRDHLAAAVLPDG 170
F-box_AtAFR-like cd22152
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ...
 15-59 1.10e-15

F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438923  Cd Length: 45  Bit Score: 70.68  E-value: 1.10e-15
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15232212  15 LIPGLPEELAIECLVRVPFQFHSSIKSVCRSWKCVISSRSFIKER 59
Cdd:cd22152   1 LIPGLPDDIALQCLARVPRSSHPSLSLVSKSWRSLLSSPELFRVR 45
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
122-316 2.12e-14

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 72.88  E-value: 2.12e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232212 122 VYNATLDTWHRVA-IPERiplFCECVAIQDAGKVLLIGGWDPETlqPVRDVFVLDFFAGEGSGRRfrrgrPMSAARSFFA 200
Cdd:COG3055  94 VYDPATNTWTKLApMPTP---RGGATALLLDGKIYVVGGWDDGG--NVAWVEVYDPATGTWTQLA-----PLPTPRDHLA 163

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232212 201 CASVGSTKVYVAGGHDDqknalrsaevyDVEKDEWSMLPPMTEGRDecHGFSMATDPGFCVLSGYGTetqgqFRSDGEIY 280
Cdd:COG3055 164 AAVLPDGKILVIGGRNG-----------SGFSNTWTTLAPLPTARA--GHAAAVLGGKILVFGGESG-----FSDEVEAY 225

                       170       180       190
                ....*....|....*....|....*....|....*.
gi 15232212 281 DPITNSWSTIenvwpfPDLsPRGRTAAAAAEFPGDF 316
Cdd:COG3055 226 DPATNTWTAL------GEL-PTPRHGHAAVLTDGKV 254
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 195-242 2.05e-10

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 55.70  E-value: 2.05e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15232212   195 ARSFFACASVGsTKVYVAGGHDDQkNALRSAEVYDVEKDEWSMLPPMT 242
Cdd:pfam01344   1 RRSGAGVVVVG-GKIYVIGGFDGN-QSLNSVEVYDPETNTWSKLPSMP 46
Kelch smart00612
Kelch domain;
208-245 6.72e-10

Kelch domain;


Pssm-ID: 128874 [Multi-domain]  Cd Length: 47  Bit Score: 54.10  E-value: 6.72e-10
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 15232212    208 KVYVAGGHDDQkNALRSAEVYDVEKDEWSMLPPMTEGR 245
Cdd:smart00612   1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTPR 37
Kelch_6 pfam13964
Kelch motif;
195-245 1.16e-06

Kelch motif;


Pssm-ID: 404790 [Multi-domain]  Cd Length: 50  Bit Score: 45.02  E-value: 1.16e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15232212   195 ARSFFACASVGStKVYVAGGHDDQKNALRSAEVYDVEKDEWSMLPPMTEGR 245
Cdd:pfam13964   1 PRTFHSVVSVGG-YIYVFGGYTNASPALNKLEVYNPLTKSWEELPPLPTPR 50
Kelch_4 pfam13418
Galactose oxidase, central domain;
195-243 9.30e-06

Galactose oxidase, central domain;


Pssm-ID: 433191 [Multi-domain]  Cd Length: 49  Bit Score: 42.60  E-value: 9.30e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15232212   195 ARSFFACASVGSTKVYVAGGHDDQKNALRSAEVYDVEKDEWSMLPPMTE 243
Cdd:pfam13418   1 PRAYHTSTSIPDDTIYLFGGEGEDGTLLSDLWVFDLSTNEWTRLGSLPS 49
F-box_AtFBW1-like cd22157
F-box domain found in Arabidopsis thaliana F-box/WD-40 repeat-containing protein 1 (AtFBW1) ...
 17-55 1.39e-05

F-box domain found in Arabidopsis thaliana F-box/WD-40 repeat-containing protein 1 (AtFBW1) and similar proteins; AtFBW1, also called WD-40-associated F-box protein 1, is an F-box protein that contains four WD-40 repeats, which are separated from each other by a spacer region. Like other F-box proteins, AtFBW1 may be a component of SCF (Skp1 Cdc53 F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. This subfamily also contains many F-box only proteins that do not have any WD repeat. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438928  Cd Length: 39  Bit Score: 41.68  E-value: 1.39e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 15232212  17 PGLPEELAIECLVRVP----FQFhssiKSVCRSWKCVISSRSF 55
Cdd:cd22157   1 SSLPDDLVEEILSRLPakslLRF----RCVCKQWNSLISSPSF 39
FBOX smart00256
A Receptor for Ubiquitination Targets;
19-59 4.70e-05

A Receptor for Ubiquitination Targets;


Pssm-ID: 197608  Cd Length: 41  Bit Score: 40.50  E-value: 4.70e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 15232212     19 LPEELAIECLVRVPFQFHSSIKSVCRSWKCVISSRSFIKER 59
Cdd:smart00256   1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 16-57 3.17e-04

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 37.90  E-value: 3.17e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15232212    16 IPGLPEELAIECLVRVPFQFHSSIKSVCRSWKCVISSRSFIK 57
Cdd:pfam00646   1 LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWK 42
PHA03098 PHA03098
kelch-like protein; Provisional
 121-296 3.00e-03

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 39.75  E-value: 3.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232212  121 SVYNATLDTWH------RVAIPERIPLFCECVAIQDaGKVLLIGGWDpETLQPVRDVFVLDFFageGSGRRFRRGRPMSA 194
Cdd:PHA03098 354 SISLNTVESWKpgeskwREEPPLIFPRYNPCVVNVN-NLIYVIGGIS-KNDELLKTVECFSLN---TNKWSKGSPLPISH 428

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232212  195 ARSffaCASVGSTKVYVAGG--HDDQKNALRSAEVYDVEKDEWSMLPPMTEGRdechgFSMAT---DPGFCVLSGYGTET 269
Cdd:PHA03098 429 YGG---CAIYHDGKIYVIGGisYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-----INASLcifNNKIYVVGGDKYEY 500

                        170       180
                 ....*....|....*....|....*..
gi 15232212  270 QgqfRSDGEIYDPITNSWSTIENVWPF 296
Cdd:PHA03098 501 Y---INEIEVYDDKTNTWTLFCKFPKV 524
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
234-310 4.60e-03

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 38.60  E-value: 4.60e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15232212 234 EWSMLPPMTEGRDEchgFSMATDPGFcVLSGyGTETQGQFRSDGEIYDPITNSWSTIenvwpfPDLSPRGRTAAAAA 310
Cdd:COG3055   2 TWSSLPDLPTPRSE---AAAALLDGK-VYVA-GGLSGGSASNSFEVYDPATNTWSEL------APLPGPPRHHAAAV 67
PHA03098 PHA03098
kelch-like protein; Provisional
 200-301 4.92e-03

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 38.98  E-value: 4.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232212  200 ACASVGSTKVYVAGGHDDQKNALRSAEVYDVEKDEWSMLPPMTegRDECHGFSMATDPGFCVLSGYGTETQGQFRSDGEI 279
Cdd:PHA03098 383 PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--ISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVES 460

                         90       100
                 ....*....|....*....|..
gi 15232212  280 YDPITNSWsTIENVWPFPDLSP 301
Cdd:PHA03098 461 YNPVTNKW-TELSSLNFPRINA 481
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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