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Conserved domains on  [gi|15233050|ref|NP_191676|]
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Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 8-737 7.11e-160

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 485.89  E-value: 7.11e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050    8 KWRLPLKPfGSCIHSYADRTKLHSNLLLGD-----LSKSGRVDEARQMFDKMPERDEFtwntmivaysnsrrlsdaeklf 82
Cdd:PLN03077  97 EWKRAVEE-GSRVCSRALSSHPSLGVRLGNamlsmFVRFGELVHAWYVFGKMPERDLF---------------------- 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050   83 rsnpvkntiSWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNV 162
Cdd:PLN03077 154 ---------SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  163 VNGLLAMYAQCKRISEAEYLFETMEgEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSA 242
Cdd:PLN03077 225 VNALITMYVKCGDVVSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  243 CRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMFGRMHER 322
Cdd:PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  323 DMKIDDFTIPSILN-CFALSRTEMKIasSAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTAL 401
Cdd:PLN03077 384 NVSPDEITIASVLSaCACLGDLDVGV--KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI 461

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  402 VTGNTHNGSYDEALKLFCNMrVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSL 481
Cdd:PLN03077 462 IAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  482 EDANVIFNSMEiRDLITWTCLIVGYA-----------------------------------KNGLLEDAQRYFDSMRTVY 526
Cdd:PLN03077 541 NYAWNQFNSHE-KDVVSWNILLTGYVahgkgsmavelfnrmvesgvnpdevtfisllcacsRSGMVTQGLEYFHSMEEKY 619

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  527 GITPGPEHYACMIDLFGRSGDFVKVEQLLHQMEVEPDATVWKAILAASRKHGNIENGERAAKTLMELEPNNAVPYVQLSN 606
Cdd:PLN03077 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCN 699

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  607 MYSAAGRQDEAANVRRLMKSRNISKEPGCSWVEEKGKVHSFMSEDRRHPRMVEIYSKVDEMMLLIKEAGYFADMSFALHD 686
Cdd:PLN03077 700 LYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE 779

                        730       740       750       760       770
                 ....*....|....*....|....*....|....*....|....*....|.
gi 15233050  687 LDKEGKELgLAYHSEKLAVAFGLLVVPSGAPIRIIKNLRVCGDCHSAMKLL 737
Cdd:PLN03077 780 IEVSKDDI-FCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFI 829
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 8-737 7.11e-160

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 485.89  E-value: 7.11e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050    8 KWRLPLKPfGSCIHSYADRTKLHSNLLLGD-----LSKSGRVDEARQMFDKMPERDEFtwntmivaysnsrrlsdaeklf 82
Cdd:PLN03077  97 EWKRAVEE-GSRVCSRALSSHPSLGVRLGNamlsmFVRFGELVHAWYVFGKMPERDLF---------------------- 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050   83 rsnpvkntiSWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNV 162
Cdd:PLN03077 154 ---------SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  163 VNGLLAMYAQCKRISEAEYLFETMEgEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSA 242
Cdd:PLN03077 225 VNALITMYVKCGDVVSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  243 CRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMFGRMHER 322
Cdd:PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  323 DMKIDDFTIPSILN-CFALSRTEMKIasSAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTAL 401
Cdd:PLN03077 384 NVSPDEITIASVLSaCACLGDLDVGV--KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI 461

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  402 VTGNTHNGSYDEALKLFCNMrVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSL 481
Cdd:PLN03077 462 IAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  482 EDANVIFNSMEiRDLITWTCLIVGYA-----------------------------------KNGLLEDAQRYFDSMRTVY 526
Cdd:PLN03077 541 NYAWNQFNSHE-KDVVSWNILLTGYVahgkgsmavelfnrmvesgvnpdevtfisllcacsRSGMVTQGLEYFHSMEEKY 619

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  527 GITPGPEHYACMIDLFGRSGDFVKVEQLLHQMEVEPDATVWKAILAASRKHGNIENGERAAKTLMELEPNNAVPYVQLSN 606
Cdd:PLN03077 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCN 699

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  607 MYSAAGRQDEAANVRRLMKSRNISKEPGCSWVEEKGKVHSFMSEDRRHPRMVEIYSKVDEMMLLIKEAGYFADMSFALHD 686
Cdd:PLN03077 700 LYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE 779

                        730       740       750       760       770
                 ....*....|....*....|....*....|....*....|....*....|.
gi 15233050  687 LDKEGKELgLAYHSEKLAVAFGLLVVPSGAPIRIIKNLRVCGDCHSAMKLL 737
Cdd:PLN03077 780 IEVSKDDI-FCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFI 829
DYW_deaminase pfam14432
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases ...
 675-737 2.75e-24

DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members containing this domain are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. This domain contains a characteriztic zinc-binding motif (CXXC, HXE) which has been shown to bind zinc ions. This domain is often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.


Pssm-ID: 464172 [Multi-domain]  Cd Length: 93  Bit Score: 97.49  E-value: 2.75e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15233050   675 GYFADMSFALHDLDKEGKELGLAYHSEKLAVAFGLLVVPSGAPIRIIKNLRVCGDCHSAMKLL 737
Cdd:pfam14432   1 GYVPDLRFVLHDVDDEEKKQLLCGHSEKLALAYGLLTTPDGATIRITKNLRVCGDCHTAFKYI 63
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 506-618 8.75e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.73  E-value: 8.75e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050 506 YAKNGLLEDAQRYFdsmRTVYGITPG-PEHYACMIDLFGRSGDFVKVEQLLHQ-MEVEPDATVWKAILA-ASRKHGNIEN 582
Cdd:COG4783  14 LLLAGDYDEAEALL---EKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEaLELDPDEPEARLNLGlALLKAGDYDE 90

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 15233050 583 GERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEAA 618
Cdd:COG4783  91 ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAI 126
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 91-125 5.51e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.60  E-value: 5.51e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15233050    91 ISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNE 125
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 8-737 7.11e-160

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 485.89  E-value: 7.11e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050    8 KWRLPLKPfGSCIHSYADRTKLHSNLLLGD-----LSKSGRVDEARQMFDKMPERDEFtwntmivaysnsrrlsdaeklf 82
Cdd:PLN03077  97 EWKRAVEE-GSRVCSRALSSHPSLGVRLGNamlsmFVRFGELVHAWYVFGKMPERDLF---------------------- 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050   83 rsnpvkntiSWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNV 162
Cdd:PLN03077 154 ---------SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  163 VNGLLAMYAQCKRISEAEYLFETMEgEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSA 242
Cdd:PLN03077 225 VNALITMYVKCGDVVSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  243 CRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMFGRMHER 322
Cdd:PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  323 DMKIDDFTIPSILN-CFALSRTEMKIasSAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTAL 401
Cdd:PLN03077 384 NVSPDEITIASVLSaCACLGDLDVGV--KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI 461

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  402 VTGNTHNGSYDEALKLFCNMrVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSL 481
Cdd:PLN03077 462 IAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  482 EDANVIFNSMEiRDLITWTCLIVGYA-----------------------------------KNGLLEDAQRYFDSMRTVY 526
Cdd:PLN03077 541 NYAWNQFNSHE-KDVVSWNILLTGYVahgkgsmavelfnrmvesgvnpdevtfisllcacsRSGMVTQGLEYFHSMEEKY 619

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  527 GITPGPEHYACMIDLFGRSGDFVKVEQLLHQMEVEPDATVWKAILAASRKHGNIENGERAAKTLMELEPNNAVPYVQLSN 606
Cdd:PLN03077 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCN 699

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  607 MYSAAGRQDEAANVRRLMKSRNISKEPGCSWVEEKGKVHSFMSEDRRHPRMVEIYSKVDEMMLLIKEAGYFADMSFALHD 686
Cdd:PLN03077 700 LYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE 779

                        730       740       750       760       770
                 ....*....|....*....|....*....|....*....|....*....|.
gi 15233050  687 LDKEGKELgLAYHSEKLAVAFGLLVVPSGAPIRIIKNLRVCGDCHSAMKLL 737
Cdd:PLN03077 780 IEVSKDDI-FCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFI 829
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 108-739 1.52e-131

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 407.33  E-value: 1.52e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  108 EAFNLFWEMQSDGikpnEYTLGS-----VLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYL 182
Cdd:PLN03081 105 EALELFEILEAGC----PFTLPAstydaLVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  183 FETMEgEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGFKTNI 262
Cdd:PLN03081 181 FDEMP-ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT 259

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  263 YVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMFGRMHERDMKIDDFTIPSILNCFA-LS 341
Cdd:PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSrLA 339

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  342 RTEMkiASSAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEALKLFCNM 421
Cdd:PLN03081 340 LLEH--AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM 417

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  422 RVGGITPDKIVTASVLSAsaeltllefgqqvhgnyiksgfpsslsvnnslvtmytkcgsledanvifnsmeirdlitwtC 501
Cdd:PLN03081 418 IAEGVAPNHVTFLAVLSA-------------------------------------------------------------C 436

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  502 livgyAKNGLLEDAQRYFDSMRTVYGITPGPEHYACMIDLFGRSGDFVKVEQLLHQMEVEPDATVWKAILAASRKHGNIE 581
Cdd:PLN03081 437 -----RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLE 511

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  582 NGERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEAANVRRLMKSRNISKEPGCSWVEEKGKVHSFMSEDRRHPRMVEIY 661
Cdd:PLN03081 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIY 591

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  662 SKVDEMMLLIKEAGYFADMSFALHDLDKEGKELGLAYHSEKLAVAFGLLVVPSGAPIRIIKNLRVCGDCHSAMKL--LVT 739
Cdd:PLN03081 592 QKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFiaLVT 671
PLN03077 PLN03077
Protein ECB2; Provisional
 72-629 1.08e-49

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 188.13  E-value: 1.08e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050   72 SRRLSDAeklfrSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHT 151
Cdd:PLN03077  38 SRGLSVA-----ASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRA 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  152 IKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMeGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFP 231
Cdd:PLN03077 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKM-PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFP 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  232 SVLTACASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIvgcvrqglige 311
Cdd:PLN03077 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMI----------- 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  312 alsmfgrmherdmkiddftipsilncfalsrtemkiassahclivkTGYatyklvnnalvdmyakrgimdsalkvFEgmi 391
Cdd:PLN03077 261 ----------------------------------------------SGY--------------------------FE--- 265

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  392 ekdviswtalvtgnthNGSYDEALKLFCNMRVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSL 471
Cdd:PLN03077 266 ----------------NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  472 VTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAKNGLLEDAqryfdsmrtvygitpgpehyacmidlfgrsgdfVKV 551
Cdd:PLN03077 330 IQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKA---------------------------------LET 376

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050  552 EQLLHQMEVEPDATVWKAILAASRKHGNIENGERaaktLMELEPNNA-VPYV----QLSNMYSAAGRQDEAANVRRLMKS 626
Cdd:PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVK----LHELAERKGlISYVvvanALIEMYSKCKCIDKALEVFHNIPE 452


                 ...
gi 15233050  627 RNI 629
Cdd:PLN03077 453 KDV 455
DYW_deaminase pfam14432
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases ...
 675-737 2.75e-24

DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members containing this domain are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. This domain contains a characteriztic zinc-binding motif (CXXC, HXE) which has been shown to bind zinc ions. This domain is often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.


Pssm-ID: 464172 [Multi-domain]  Cd Length: 93  Bit Score: 97.49  E-value: 2.75e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15233050   675 GYFADMSFALHDLDKEGKELGLAYHSEKLAVAFGLLVVPSGAPIRIIKNLRVCGDCHSAMKLL 737
Cdd:pfam14432   1 GYVPDLRFVLHDVDDEEKKQLLCGHSEKLALAYGLLTTPDGATIRITKNLRVCGDCHTAFKYI 63
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 577-639 2.44e-17

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 76.81  E-value: 2.44e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15233050   577 HGNIENGERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEAANVRRLMKSRNISKEPGCSWVE 639
Cdd:pfam20431   1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 39-147 7.94e-13

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 72.21  E-value: 7.94e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050   39 SKSGRVDEARQMFDKMPERDEFTWNTMIVAYS---------------------------------NSR------------ 73
Cdd:PLN03081 270 SKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAlhgyseealclyyemrdsgvsidqftfsimiriFSRlallehakqaha 349

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050   74 -------------------------RLSDAEKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTL 128
Cdd:PLN03081 350 glirtgfpldivantalvdlyskwgRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429

                        170
                 ....*....|....*....
gi 15233050  129 GSVLRMCTSLVLLLRGEQI 147
Cdd:PLN03081 430 LAVLSACRYSGLSEQGWEI 448
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 88-135 1.43e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 56.99  E-value: 1.43e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15233050    88 KNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMC 135
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 229-541 1.59e-10

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 64.90  E-value: 1.59e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050   229 TFPSVLTACASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKC----------REMESAralleGMEVDdVVSWNS 298
Cdd:PLN03218  439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSgkvdamfevfHEMVNA-----GVEAN-VHTFGA 512

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050   299 MIVGCVRQGLIGEALSMFGRMHERDMKIDDFTIPSILN-CF---ALSR-----TEMK----------------IASSAHC 353
Cdd:PLN03218  513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISaCGqsgAVDRafdvlAEMKaethpidpdhitvgalMKACANA 592

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050   354 LIVKTGYATYKL-----------VNNALVDMYAKRGIMDSALKVFEGMIEKDV----ISWTALVTGNTHNGSYDEALKLF 418
Cdd:PLN03218  593 GQVDRAKEVYQMiheynikgtpeVYTIAVNSCSQKGDWDFALSIYDDMKKKGVkpdeVFFSALVDVAGHAGDLDKAFEIL 672

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050   419 CNMRVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTmytkcgSLEDANVIFNSMEIRD--- 495
Cdd:PLN03218  673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT------ALCEGNQLPKALEVLSemk 746

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 15233050   496 -------LITWTCLIVGYAKNGlleDAQRYFDSMRTVY--GITPGPEHYACMIDL 541
Cdd:PLN03218  747 rlglcpnTITYSILLVASERKD---DADVGLDLLSQAKedGIKPNLVMCRCITGL 798
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 506-618 8.75e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.73  E-value: 8.75e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050 506 YAKNGLLEDAQRYFdsmRTVYGITPG-PEHYACMIDLFGRSGDFVKVEQLLHQ-MEVEPDATVWKAILA-ASRKHGNIEN 582
Cdd:COG4783  14 LLLAGDYDEAEALL---EKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEaLELDPDEPEARLNLGlALLKAGDYDE 90

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 15233050 583 GERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEAA 618
Cdd:COG4783  91 ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAI 126
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 408-620 1.74e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.50  E-value: 1.74e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050 408 NGSYDEALKLFcnMRVGGITPDkivTASVLSASAELtLLEFGQ-----QVHGNYIKSGfPSSLSVNNSLVTMYTKCGSLE 482
Cdd:COG2956  21 NGQPDKAIDLL--EEALELDPE---TVEAHLALGNL-YRRRGEydraiRIHQKLLERD-PDRAEALLELAQDYLKAGLLD 93

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050 483 DANVIFN---SMEIRDLITWTCLIVGYAKNGLLEDAQRYFDSMRTvygITPGPEHYACMI-DLFGRSGDFVKVEQLLHQ- 557
Cdd:COG2956  94 RAEELLEkllELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLK---LGPENAHAYCELaELYLEQGDYDEAIEALEKa 170

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15233050 558 MEVEPD-ATVWKAILAASRKHGNIENGERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEAANV 620
Cdd:COG2956 171 LKLDPDcARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALEL 234
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 292-339 2.17e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.05  E-value: 2.17e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15233050   292 DVVSWNSMIVGCVRQGLIGEALSMFGRMHERDMKIDDFTIPSILNCFA 339
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 91-121 5.35e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 43.61  E-value: 5.35e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15233050    91 ISWNALISGYCKSGSKVEAFNLFWEMQSDGI 121
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 91-125 5.51e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.60  E-value: 5.51e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15233050    91 ISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNE 125
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 294-328 1.08e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.83  E-value: 1.08e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15233050   294 VSWNSMIVGCVRQGLIGEALSMFGRMHERDMKIDD 328
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 34-316 1.14e-05

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 49.11  E-value: 1.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050    34 LLGDLSKSGRVDEARQMFDKMP----ERDEFTWNTMIVAYSNSRRLSDA---EKLFRSNPVK-NTISWNALISGYCKSGS 105
Cdd:PLN03218  478 LISTCAKSGKVDAMFEVFHEMVnagvEANVHTFGALIDGCARAGQVAKAfgaYGIMRSKNVKpDRVVFNALISACGQSGA 557

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050   106 KVEAFNLFWEMQSDG--IKPNEYTLGSVLRMCTSLVLLLRGEQIHGHtiktgfdLDVNVVNGLLAMYA----QCKRISEA 179
Cdd:PLN03218  558 VDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQM-------IHEYNIKGTPEVYTiavnSCSQKGDW 630

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050   180 EY---LFETM--EGEKNNVTWTSML---TGYSqnGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHC 251
Cdd:PLN03218  631 DFalsIYDDMkkKGVKPDEVFFSALvdvAGHA--GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15233050   252 CIVKSGFKTNIYVQSALidMYAKCremeSARALLEGMEV-DDV---------VSWNSMIVGCVRQGLIGEALSMF 316
Cdd:PLN03218  709 DIKSIKLRPTVSTMNAL--ITALC----EGNQLPKALEVlSEMkrlglcpntITYSILLVASERKDDADVGLDLL 777
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 57-102 1.23e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 43.12  E-value: 1.23e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15233050    57 RDEFTWNTMIVAYSNSRRLSDAEKLF---RSNPVK-NTISWNALISGYCK 102
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFnemKKRGVKpNVYTYTILINGLCK 50
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 506-618 2.16e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.07  E-value: 2.16e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050 506 YAKNGLLEDAQRYFdsmRTVYGITPG-PEHYACMIDLFGRSGDFVKVEQLLHQ-MEVEPD-ATVWKAILAASRKHGNIEN 582
Cdd:COG3914  88 LQALGRYEEALALY---RRALALNPDnAEALFNLGNLLLALGRLEEALAALRRaLALNPDfAEAYLNLGEALRRLGRLEE 164

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 15233050 583 GERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEAA 618
Cdd:COG3914 165 AIAALRRALELDPDNAEALNNLGNALQDLGRLEEAI 200
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 544-625 5.52e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.64  E-value: 5.52e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050 544 RSGDFVKVEQLLHQ-MEVEPDATVWKAILA-ASRKHGNIENGERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEAANV- 620
Cdd:COG4783  16 LAGDYDEAEALLEKaLELDPDNPEAFALLGeILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALl 95


                ....*
gi 15233050 621 RRLMK 625
Cdd:COG4783  96 EKALK 100
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 294-324 5.63e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.53  E-value: 5.63e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15233050   294 VSWNSMIVGCVRQGLIGEALSMFGRMHERDM 324
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 190-238 1.86e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 39.65  E-value: 1.86e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15233050   190 KNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACA 238
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 393-437 1.97e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 39.65  E-value: 1.97e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 15233050   393 KDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDkIVTASVL 437
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPN-VYTYTIL 44
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 89-116 3.97e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.10  E-value: 3.97e-04
                          10        20
                  ....*....|....*....|....*...
gi 15233050    89 NTISWNALISGYCKSGSKVEAFNLFWEM 116
Cdd:pfam12854   6 DVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 193-222 4.69e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.22  E-value: 4.69e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 15233050   193 VTWTSMLTGYSQNGFAFKAIECFRDLRREG 222
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKG 30
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 495-523 8.47e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 37.33  E-value: 8.47e-04
                          10        20
                  ....*....|....*....|....*....
gi 15233050   495 DLITWTCLIVGYAKNGLLEDAQRYFDSMR 523
Cdd:pfam12854   6 DVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 497-523 9.24e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.06  E-value: 9.24e-04
                          10        20
                  ....*....|....*....|....*..
gi 15233050   497 ITWTCLIVGYAKNGLLEDAQRYFDSMR 523
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMK 27
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 32-71 9.89e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 37.73  E-value: 9.89e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15233050    32 NLLLGDLSKSGRVDEARQMFDKMPER----DEFTWNTMIVAYSN 71
Cdd:pfam13041   7 NTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLCK 50
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 533-620 1.27e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.33  E-value: 1.27e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050 533 EHYACMIDLFGRSGDFVKVEQLLHQ-MEVEPD-ATVWKAILAASRKHGNIENGERAAKTLMELEPNNAVPYVQLSNMYSA 610
Cdd:COG5010  55 AIESPSDNLYNKLGDFEESLALLEQaLQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134

                        90
                ....*....|
gi 15233050 611 AGRQDEAANV 620
Cdd:COG5010 135 LGQDDEAKAA 144
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
490-617 1.37e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.15  E-value: 1.37e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050 490 SMEIRDLITWTCLIVGYAKNGLLEDAQRYFdsmRTVYGITPG-PEHYACMIDLFGRSGDFVKVEQLLHQ-MEVEPD-ATV 566
Cdd:COG0457   2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDY---EKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQaLELDPDdAEA 78

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 15233050 567 WKAILAASRKHGNIENGERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEA 617
Cdd:COG0457  79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEA 129
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 563-625 1.43e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.79  E-value: 1.43e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15233050 563 DATVWKAILAASRKHGNIENGERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEAANV-RRLMK 625
Cdd:COG4783   3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLlHEALE 66
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
462-617 2.09e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.76  E-value: 2.09e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050 462 PSSLSVNNSLVTMYTKCGSLEDANVIFN-SMEI--RDLITWTCLIVGYAKNGLLEDAQRYFDSmrtVYGITPG-PEHYAC 537
Cdd:COG0457   5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEkALELdpDDAEALYNLGLAYLRLGRYEEALADYEQ---ALELDPDdAEALNN 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233050 538 MIDLFGRSGDFVKVEQLLHQ-MEVEP-DATVWKAILAASRKHGNIENGERAAKTLMELEPNNAVPYVQLSNMYSAAGRQD 615
Cdd:COG0457  82 LGLALQALGRYEEALEDYDKaLELDPdDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161


                ..
gi 15233050 616 EA 617
Cdd:COG0457 162 EA 163
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
578-625 4.30e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.07  E-value: 4.30e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 15233050 578 GNIENGERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEAANVRRLMK 625
Cdd:COG3063   6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALK 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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