|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
74-1009 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1288.83 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 74 LGGLLSGIFkGSDNGestRQ--QYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKR 151
Cdd:COG0653 1 MGKLLKKIF-GSRND---RElkRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 152 VLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLI 231
Cdd:COG0653 77 VLGMRHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 232 QQNMTPEQRKENYLCDITYVTNSELGFDYLRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYY 311
Cdd:COG0653 157 VHGMDPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYY 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 312 KAAKIASAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPRE-QWASYVLNAIKAKELFLRDVNYIIRAKEVLI 390
Cdd:COG0653 237 RINKLVPRLKRDGDYTVDEKARTVTLTEEGIEKVEKLLGIDNLYDPENiELVHHLNQALRAHALFKRDVDYIVKDGEVVI 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 391 VDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTN 470
Cdd:COG0653 317 VDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPTN 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 471 KPMIRKDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVEREAEIVAQ 550
Cdd:COG0653 397 RPMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNAK--QHEREAEIVAQ 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 551 SGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREILMPRvvkptdgvfvsvkkappkrtwkvneklfpcklsnekakl 630
Cdd:COG0653 475 AGRPGAVTIATNMAGRGTDIVLGGNPEFLAAAELADRGLEW--------------------------------------- 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 631 aEEAVQSAVEAWgqkslteleaeerlsyscekgpvqdevigklrtaflaiakeykgytDEERKKVVEAGGLHVVGTERHE 710
Cdd:COG0653 516 -EEAIAKIKAEW----------------------------------------------QAEHEEVLEAGGLHVIGTERHE 548
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 711 SRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMMRAFRV-EDLPIESKMLTKALDEAQRKVENYFFDIRK 789
Cdd:COG0653 549 SRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMeEGEPIEHKMVSKAIENAQKKVEGRNFDIRK 628
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 790 QLFEFDEVLNSQRDRVYTERRRALVSDSLEPLIIEYAELTMDDILEANIGPDTPKESWDFEKLIAKVQQYcYLLNDLTPD 869
Cdd:COG0653 629 NLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDEYIPEGSYPEQWDLEGLEEALKEL-FGLDLPIEE 707
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 870 LLKSEGSSYEGLQDYLRARGRDAYLQKREIVekqSPGLMKDAERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPL 949
Cdd:COG0653 708 WLDEEGLDEEELRERLLEAADEAYEEKEEEL---GPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPL 784
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15234320 950 IEYKLEGYNLFLEMMAQIRRNVIYSIYQFQPVRVKKDE--EKKSQNGKPSKQVDNASEKPKQ 1009
Cdd:COG0653 785 VEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEEEREevEEERRENHADPAGEEEEEAPKQ 846
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
74-979 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1269.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 74 LGGLLSGIFkGSDNGESTRQqYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVL 153
Cdd:PRK12904 1 MLGLLKKIF-GSRNDRELKR-LRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 154 GLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQ 233
Cdd:PRK12904 79 GMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 234 NMTPEQRKENYLCDITYVTNSELGFDYLRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKA 313
Cdd:PRK12904 159 GMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 314 AKIASAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPRE-QWASYVLNAIKAKELFLRDVNYIIRAKEVLIVD 392
Cdd:PRK12904 239 NKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENiALVHHLNQALRAHELFKRDVDYIVKDGEVVIVD 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 393 EFTGRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKP 472
Cdd:PRK12904 319 EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRP 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 473 MIRKDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVEREAEIVAQSG 552
Cdd:PRK12904 399 MIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAG 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 553 RLGAVTIATNMAGRGTDIILGGNAEFMARLKLREilmprvvkptdgvfvsvkkappkrtwkvneklfpcklsnekaklae 632
Cdd:PRK12904 477 RPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEE---------------------------------------------- 510
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 633 eavqsaveawgqksltelEAEERLsyscekgpvqdevigklrtaflaiaKEYKGYTDEERKKVVEAGGLHVVGTERHESR 712
Cdd:PRK12904 511 ------------------ETEEQI-------------------------AKIKAEWQEEHEEVLEAGGLHVIGTERHESR 547
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 713 RIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMMRAFRV-EDLPIESKMLTKALDEAQRKVENYFFDIRKQL 791
Cdd:PRK12904 548 RIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMkEGEAIEHKMVTRAIENAQKKVEGRNFDIRKQL 627
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 792 FEFDEVLNSQRDRVYTERRRALVSDSLEPLIIEYAELTMDDILEANIGPDTPKESWDFEKLIAKVQQYCYLlnDLTPDLL 871
Cdd:PRK12904 628 LEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFGL--ELPIEEW 705
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 872 KSEGSSYEGLQDYLRARGRDAYLQKREIVekqSPGLMKDAERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIE 951
Cdd:PRK12904 706 LEEGLDEEELRERILEAAEEAYEEKEEEL---GEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQE 782
|
890 900
....*....|....*....|....*...
gi 15234320 952 YKLEGYNLFLEMMAQIRRNVIYSIYQFQ 979
Cdd:PRK12904 783 YKREGFELFEEMLDSIKEEVVRTLMKVQ 810
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
102-967 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1227.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 102 VNRLETEISALSDSELRERTDALKQRAQK-GESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGE 180
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAKqGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 181 GKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYLCDITYVTNSELGFDY 260
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 261 LRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIASAFERDIHYTVDEKQKTVLLTEQ 340
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEKEVDYEVDEKNRAVLLTEQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 341 GYEDAEEILDVKDLYDP-REQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLP 419
Cdd:TIGR00963 241 GMKKAEDLLGVDNLYDLeNSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 420 IQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPMIRKDESDVVFKAVNGKWRAVVVEISR 499
Cdd:TIGR00963 321 IQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDLVYKTEEEKWKAVVEEIKE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 500 MHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVEREAEIVAQSGRLGAVTIATNMAGRGTDIILggnaefm 579
Cdd:TIGR00963 401 RHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKL------- 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 580 arlklreilmprvvkptdgvfvsvkkappkrtwkvneklfpcklsnekaklaeeavqsaveawgqkslteleaeerlsys 659
Cdd:TIGR00963 --------------------------------------------------------------------------------
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 660 cekgpvqdevigklrtaflaiakeykgytdeerKKVVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 739
Cdd:TIGR00963 472 ---------------------------------EEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 740 NIFRIFGGDRIQGMMRAFRVED-LPIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDSL 818
Cdd:TIGR00963 519 NLMRIFGGDRLEGLMRRLGMDDdEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRVLESEDL 598
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 819 EPLIIEYAELTMDDILEANIGPDTPKESWDFEKLIAKVQQYCYLLNDLTPDLLksEGSSYEGLQDYLRARGRDAYLQKRE 898
Cdd:TIGR00963 599 SELILQMLESTLDRIVDAYINEEKLSEEWDLEGLIEKLKTLFLLDGDLTPEDL--ENLTSEDLKELLLEKIRAAYDEKEE 676
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15234320 899 IVEKQspgLMKDAERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQI 967
Cdd:TIGR00963 677 QLESE---RMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
78-456 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 693.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 78 LSGIFkGSDNgESTRQQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRP 157
Cdd:smart00957 1 LKKLF-GSKN-DRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRH 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 158 FDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTP 237
Cdd:smart00957 79 FDVQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 238 EQRKENYLCDITYVTNSELGFDYLRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKP-SDQYYKAAKI 316
Cdd:smart00957 159 EERRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDEsSDLYHRADKF 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 317 ASAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDP-REQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFT 395
Cdd:smart00957 239 VPRLKEDEDYTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPeNIELLHHVNQALRAHYLFKRDVDYIVRDGEVVIVDEFT 318
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15234320 396 GRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEF 456
Cdd:smart00957 319 GRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEF 379
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
78-456 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 675.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 78 LSGIFkGSDNgESTRQQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRP 157
Cdd:pfam07517 1 LKKIF-GSPN-ERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRH 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 158 FDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTP 237
Cdd:pfam07517 79 YDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 238 EQRKENYLCDITYVTNSELGFDYLRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIA 317
Cdd:pfam07517 159 EERRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 318 SAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPR-EQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFTG 396
Cdd:pfam07517 239 KSLEEDGDYEIDEKSKNVELTEKGIEKIEKLLGIDNLYDPEnVELLHHINQALKAHHLFKRDVDYIVRDGEVVIVDEFTG 318
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 397 RVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEF 456
Cdd:pfam07517 319 RVMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEF 378
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
116-469 |
3.22e-136 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 408.85 E-value: 3.22e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 116 ELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNAL 195
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 196 SGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYLCDITYVTNSELGFDYLRDNLATSVEELVLR 275
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 276 DFNYCVIDEVDSILIDEARTPLIISGpaekpsdqyykaakiasaferdihytvdekqktvllteqgyedaeeildvkdly 355
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 356 dpreqwasyvlnaikakelflrdvnyiirakevlivdeftgrvmqgrrwsdglhqaveakeglpiqnesiTLASISYQNF 435
Cdd:cd17928 187 ----------------------------------------------------------------------TLATITFQNY 196
|
330 340 350
....*....|....*....|....*....|....
gi 15234320 436 FLQFPKLCGMTGTASTESAEFESIYKLKVTIVPT 469
Cdd:cd17928 197 FRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
74-1009 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1288.83 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 74 LGGLLSGIFkGSDNGestRQ--QYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKR 151
Cdd:COG0653 1 MGKLLKKIF-GSRND---RElkRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 152 VLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLI 231
Cdd:COG0653 77 VLGMRHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 232 QQNMTPEQRKENYLCDITYVTNSELGFDYLRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYY 311
Cdd:COG0653 157 VHGMDPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYY 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 312 KAAKIASAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPRE-QWASYVLNAIKAKELFLRDVNYIIRAKEVLI 390
Cdd:COG0653 237 RINKLVPRLKRDGDYTVDEKARTVTLTEEGIEKVEKLLGIDNLYDPENiELVHHLNQALRAHALFKRDVDYIVKDGEVVI 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 391 VDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTN 470
Cdd:COG0653 317 VDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPTN 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 471 KPMIRKDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVEREAEIVAQ 550
Cdd:COG0653 397 RPMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNAK--QHEREAEIVAQ 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 551 SGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREILMPRvvkptdgvfvsvkkappkrtwkvneklfpcklsnekakl 630
Cdd:COG0653 475 AGRPGAVTIATNMAGRGTDIVLGGNPEFLAAAELADRGLEW--------------------------------------- 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 631 aEEAVQSAVEAWgqkslteleaeerlsyscekgpvqdevigklrtaflaiakeykgytDEERKKVVEAGGLHVVGTERHE 710
Cdd:COG0653 516 -EEAIAKIKAEW----------------------------------------------QAEHEEVLEAGGLHVIGTERHE 548
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 711 SRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMMRAFRV-EDLPIESKMLTKALDEAQRKVENYFFDIRK 789
Cdd:COG0653 549 SRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMeEGEPIEHKMVSKAIENAQKKVEGRNFDIRK 628
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 790 QLFEFDEVLNSQRDRVYTERRRALVSDSLEPLIIEYAELTMDDILEANIGPDTPKESWDFEKLIAKVQQYcYLLNDLTPD 869
Cdd:COG0653 629 NLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDEYIPEGSYPEQWDLEGLEEALKEL-FGLDLPIEE 707
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 870 LLKSEGSSYEGLQDYLRARGRDAYLQKREIVekqSPGLMKDAERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPL 949
Cdd:COG0653 708 WLDEEGLDEEELRERLLEAADEAYEEKEEEL---GPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPL 784
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15234320 950 IEYKLEGYNLFLEMMAQIRRNVIYSIYQFQPVRVKKDE--EKKSQNGKPSKQVDNASEKPKQ 1009
Cdd:COG0653 785 VEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEEEREevEEERRENHADPAGEEEEEAPKQ 846
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
74-979 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1269.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 74 LGGLLSGIFkGSDNGESTRQqYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVL 153
Cdd:PRK12904 1 MLGLLKKIF-GSRNDRELKR-LRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 154 GLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQ 233
Cdd:PRK12904 79 GMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 234 NMTPEQRKENYLCDITYVTNSELGFDYLRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKA 313
Cdd:PRK12904 159 GMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 314 AKIASAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPRE-QWASYVLNAIKAKELFLRDVNYIIRAKEVLIVD 392
Cdd:PRK12904 239 NKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENiALVHHLNQALRAHELFKRDVDYIVKDGEVVIVD 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 393 EFTGRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKP 472
Cdd:PRK12904 319 EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRP 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 473 MIRKDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVEREAEIVAQSG 552
Cdd:PRK12904 399 MIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAG 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 553 RLGAVTIATNMAGRGTDIILGGNAEFMARLKLREilmprvvkptdgvfvsvkkappkrtwkvneklfpcklsnekaklae 632
Cdd:PRK12904 477 RPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEE---------------------------------------------- 510
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 633 eavqsaveawgqksltelEAEERLsyscekgpvqdevigklrtaflaiaKEYKGYTDEERKKVVEAGGLHVVGTERHESR 712
Cdd:PRK12904 511 ------------------ETEEQI-------------------------AKIKAEWQEEHEEVLEAGGLHVIGTERHESR 547
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 713 RIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMMRAFRV-EDLPIESKMLTKALDEAQRKVENYFFDIRKQL 791
Cdd:PRK12904 548 RIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMkEGEAIEHKMVTRAIENAQKKVEGRNFDIRKQL 627
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 792 FEFDEVLNSQRDRVYTERRRALVSDSLEPLIIEYAELTMDDILEANIGPDTPKESWDFEKLIAKVQQYCYLlnDLTPDLL 871
Cdd:PRK12904 628 LEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFGL--ELPIEEW 705
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 872 KSEGSSYEGLQDYLRARGRDAYLQKREIVekqSPGLMKDAERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIE 951
Cdd:PRK12904 706 LEEGLDEEELRERILEAAEEAYEEKEEEL---GEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQE 782
|
890 900
....*....|....*....|....*...
gi 15234320 952 YKLEGYNLFLEMMAQIRRNVIYSIYQFQ 979
Cdd:PRK12904 783 YKREGFELFEEMLDSIKEEVVRTLMKVQ 810
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
102-967 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1227.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 102 VNRLETEISALSDSELRERTDALKQRAQK-GESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGE 180
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAKqGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 181 GKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYLCDITYVTNSELGFDY 260
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 261 LRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIASAFERDIHYTVDEKQKTVLLTEQ 340
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEKEVDYEVDEKNRAVLLTEQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 341 GYEDAEEILDVKDLYDP-REQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLP 419
Cdd:TIGR00963 241 GMKKAEDLLGVDNLYDLeNSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 420 IQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPMIRKDESDVVFKAVNGKWRAVVVEISR 499
Cdd:TIGR00963 321 IQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDLVYKTEEEKWKAVVEEIKE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 500 MHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVEREAEIVAQSGRLGAVTIATNMAGRGTDIILggnaefm 579
Cdd:TIGR00963 401 RHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKL------- 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 580 arlklreilmprvvkptdgvfvsvkkappkrtwkvneklfpcklsnekaklaeeavqsaveawgqkslteleaeerlsys 659
Cdd:TIGR00963 --------------------------------------------------------------------------------
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 660 cekgpvqdevigklrtaflaiakeykgytdeerKKVVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 739
Cdd:TIGR00963 472 ---------------------------------EEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 740 NIFRIFGGDRIQGMMRAFRVED-LPIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDSL 818
Cdd:TIGR00963 519 NLMRIFGGDRLEGLMRRLGMDDdEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRVLESEDL 598
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 819 EPLIIEYAELTMDDILEANIGPDTPKESWDFEKLIAKVQQYCYLLNDLTPDLLksEGSSYEGLQDYLRARGRDAYLQKRE 898
Cdd:TIGR00963 599 SELILQMLESTLDRIVDAYINEEKLSEEWDLEGLIEKLKTLFLLDGDLTPEDL--ENLTSEDLKELLLEKIRAAYDEKEE 676
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15234320 899 IVEKQspgLMKDAERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQI 967
Cdd:TIGR00963 677 QLESE---RMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| secA |
CHL00122 |
preprotein translocase subunit SecA; Validated |
87-980 |
0e+00 |
|
preprotein translocase subunit SecA; Validated
Pssm-ID: 214371 [Multi-domain] Cd Length: 870 Bit Score: 1218.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 87 NGESTRQQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGM 166
Cdd:CHL00122 7 NNKSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHFDVQLIGGL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 167 VLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYLC 246
Cdd:CHL00122 87 VLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYLK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 247 DITYVTNSELGFDYLRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIASAFERDIHY 326
Cdd:CHL00122 167 DITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKYLEKNVHY 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 327 TVDEKQKTVLLTEQGYEDAEEILDVKDLYDPREQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFTGRVMQGRRWSD 406
Cdd:CHL00122 247 EVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSD 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 407 GLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPMIRKDESDVVFKAV 486
Cdd:CHL00122 327 GLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDE 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 487 NGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGR 566
Cdd:CHL00122 407 LSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRKGSITIATNMAGR 486
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 567 GTDIILGGNAEFMARLKLREILmprvvkptdgvfvsvKKAPPKRTWKVNEKLFPCKLSNEKAKLAeeavqsaveawgQKS 646
Cdd:CHL00122 487 GTDIILGGNPEFKLKKELYDLL---------------LSYKSNEKISTISQNFLNILNSLKNDLK------------FLS 539
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 647 LTELEAEERLSYSCEKGPVQDEVIGKLRTAFLAIAKEYKGYTDEERKKVVEAGGLHVVGTERHESRRIDNQLRGRSGRQG 726
Cdd:CHL00122 540 LSDFENLKILNEASEISIPKNSYQLSLRFLYNELLEKYKKLQEKEKKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQG 619
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 727 DPGSSRFFLSLEDNIFRIFGGDRIQGMMRAFRVEDLPIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVY 806
Cdd:CHL00122 620 DPGSSRFFLSLEDNLLRIFGGDKIQNLMQTLNLDDEPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIY 699
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 807 TERRRALVSDSLEPLIIEYAELTMDDILEANIGPDTPKeswdfEKLIAKVQQYCYLLND-LTPDLLKSEGSSYEGLQDYL 885
Cdd:CHL00122 700 SERRKILESQSLRDWILAYGEQVIDDIITFLKSRKNPN-----NKFINLINKFKELLKLpLCFNKSDLNTLNSGELKKFL 774
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 886 RARGRDAYLQKREIVEKQSPGLMKDAERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMA 965
Cdd:CHL00122 775 YQQFWISYDLKELYLEQIGTGLMRELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMIN 854
|
890
....*....|....*
gi 15234320 966 QIRRNVIYSIYQFQP 980
Cdd:CHL00122 855 HIRHLVIYDLFRSSI 869
|
|
| secA |
PRK12906 |
preprotein translocase subunit SecA; Reviewed |
86-979 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237260 [Multi-domain] Cd Length: 796 Bit Score: 978.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 86 DNGESTRQQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGG 165
Cdd:PRK12906 10 DNDKRELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEAFAVAREGAKRVLGLRPFDVQIIGG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 166 MVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYL 245
Cdd:PRK12906 90 IVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAYN 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 246 CDITYVTNSELGFDYLRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIASAFERD-- 323
Cdd:PRK12906 170 CDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDea 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 324 ---------IHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPREQ-WASYVLNAIKAKELFLRDVNYIIRAKEVLIVDE 393
Cdd:PRK12906 250 edgdddedtGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTaLAHHIDQALRANYIMLKDIDYVVQDGEVLIVDE 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 394 FTGRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPM 473
Cdd:PRK12906 330 FTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPV 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 474 IRKDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVEREAEIVAQSGR 553
Cdd:PRK12906 410 IRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAK--NHAKEAEIIMNAGQ 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 554 LGAVTIATNMAGRGTDIILGGNaefmarlklreilmprvvkptdgvfvsvkkappkrtwkvneklfpcklsnekaklaee 633
Cdd:PRK12906 488 RGAVTIATNMAGRGTDIKLGPG---------------------------------------------------------- 509
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 634 avqsaveawgqkslteleaeerlsyscekgpvqdevigklrtaflaiakeykgytdeerkkVVEAGGLHVVGTERHESRR 713
Cdd:PRK12906 510 -------------------------------------------------------------VKELGGLAVIGTERHESRR 528
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 714 IDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMMRAFRVED--LPIESKMLTKALDEAQRKVENYFFDIRKQL 791
Cdd:PRK12906 529 IDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSDRVKAFLDRLGMNDddQVIESRMITRQVESAQKRVEGNNYDTRKQL 608
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 792 FEFDEVLNSQRDRVYTERRRALVSD-SLEPLIIEYAELTMDDILEANIGPDtpKESWDFEKLIAKVQQycYLLNDLTPDL 870
Cdd:PRK12906 609 LQYDDVMREQREVIYKQRMQVINEDkDLKEVLMPMIKRTVDRQVQMYTQGD--KKDWDLDALRDFIVS--AMPDEETFDF 684
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 871 LKSEGSSYEGLQDYLRARGRDAYLQKREivEKQSPGLMKDAERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLI 950
Cdd:PRK12906 685 EDLKGKSPEELKKRLLDIVEDNYAEKEK--QLGDPTQMLEFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRGYGQLNPLV 762
|
890 900
....*....|....*....|....*....
gi 15234320 951 EYKLEGYNLFLEMMAQIRRNVIYSIYQFQ 979
Cdd:PRK12906 763 EYQEEGYRMFEEMISNIDYDVTRLFMKAQ 791
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
93-988 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 844.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 93 QQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGE 172
Cdd:PRK09200 15 KKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPYDVQLIGALVLHEGN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 173 IAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGL-IQQNMTPEQRKENYLCDITYV 251
Cdd:PRK09200 95 IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLnFSDIDDASEKKAIYEADIIYT 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 252 TNSELGFDYLRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIASAFERDIHYTVDEK 331
Cdd:PRK09200 175 TNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEE 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 332 QKTVLLTEQGYEDAEEILDVKDLYDPREQ-WASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFTGRVMQGRRWSDGLHQ 410
Cdd:PRK09200 255 KKEVWLTDQGIEKAESYFGIDNLYSLEHQvLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQ 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 411 AVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPMIRKDESDVVFKAVNGKW 490
Cdd:PRK09200 335 AIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKY 414
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 491 RAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVEREAEIVAQSGRLGAVTIATNMAGRGTDI 570
Cdd:PRK09200 415 KAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAK--NAAKEAQIIAEAGQKGAVTVATNMAGRGTDI 492
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 571 ILGgnaefmarlklreilmprvvkptdgvfvsvkkappkrtwkvneklfpcklsnekaklaeeavqsaveawgqksltel 650
Cdd:PRK09200 493 KLG----------------------------------------------------------------------------- 495
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 651 eaeerlsyscekgpvqdevigklrtaflaiakeykgytdeerKKVVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGS 730
Cdd:PRK09200 496 ------------------------------------------EGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGS 533
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 731 SRFFLSLEDNIFRIFGGDRIQGMMRAFRVEDL----PIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVY 806
Cdd:PRK09200 534 SQFFISLEDDLLKRFAPEELEKLKKKLKTDAQrltgLLFNRKVHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVY 613
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 807 TERRRALVSD--SLEPLIIEYAELTMDDILEANIGPDTPKESWDFEKLIakvqqycYLLNDLTPDLlksEGSSYEGLQDY 884
Cdd:PRK09200 614 KERNRLLEEDdrDLIDIVILMIDVYLEAVAEEYLLEKSLLEEWIYENLS-------FQLNEILSNT---NFPDKKEVVQF 683
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 885 LRARGRDAYLQKREIVEKQSpgLMKDAERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMM 964
Cdd:PRK09200 684 LLEEAEKQLKEKRNKLPSAT--LYNQFLRKVALKAIDQNWVEQVDALQQLKEGIGLRQYGQRNPIREYQKEALESFEYMY 761
|
890 900
....*....|....*....|....
gi 15234320 965 AQIRRNVIYSIYQFQPVRVKKDEE 988
Cdd:PRK09200 762 ENIKKDMVRNLLLSLLVFDKEGEI 785
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
101-975 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 803.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 101 SVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGE 180
Cdd:PRK12903 23 QINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIRVEAFAVAREATKRVLGKRPYDVQIIGGIILDLGSVAEMKTGE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 181 GKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYLCDITYVTNSELGFDY 260
Cdd:PRK12903 103 GKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAYACDITYSVHSELGFDY 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 261 LRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIASAFERDiHYTVDEKQKTVLLTEQ 340
Cdd:PRK12903 183 LRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKED-DYKIDEETKAISLTEK 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 341 GYEDAEEILDVKDLYD-PREQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLP 419
Cdd:PRK12903 262 GIKKANKFFKLKNLYDiENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVE 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 420 IQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPMIRKDESDVVFKAVNGKWRAVVVEISR 499
Cdd:PRK12903 342 IEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKR 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 500 MHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGgnaefm 579
Cdd:PRK12903 422 VHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK--QNAREAEIIAKAGQKGAITIATNMAGRGTDIKLS------ 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 580 arlklreilmprvvkptdgvfvsvkkappkrtwkvneklfpcklsnekaklaeeavqsaveawgqkslteleaeerlsys 659
Cdd:PRK12903 --------------------------------------------------------------------------------
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 660 cekgpvqdevigklrtaflaiakeykgytdeerKKVVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 739
Cdd:PRK12903 494 ---------------------------------KEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 740 NIFRIF-GGDRIQgmmRAF-RVEDLPIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDS 817
Cdd:PRK12903 541 QLFRRFsNFDKIK---EAFkKLGDDEIKSKFFSKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIADD 617
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 818 LEPLIIEYAELTMDDILEANIGPDtPKESWDFEKLIAKVQQ--YCYLLNDLTPDLLKSEgsSYEGLQDYLRARGRDAYLQ 895
Cdd:PRK12903 618 LSHVIEKMISRAVEQILKNSFIIL-KNNTINYKELVEFLNDnlLRITHFKFSEKDFENY--HKEELAQYLIEALNEIYFK 694
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 896 KREIVEKQSPGLMKDA-ERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYS 974
Cdd:PRK12903 695 KRQVILDKIALNTFFEsERYIILSALDKYWQNHIDTMDKLRSGVNLVQYSQKNPYQVYTEEGTKKFNILLQEIAYDVIVS 774
|
.
gi 15234320 975 I 975
Cdd:PRK12903 775 L 775
|
|
| secA |
PRK12901 |
preprotein translocase subunit SecA; Reviewed |
98-1016 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237256 [Multi-domain] Cd Length: 1112 Bit Score: 710.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 98 IVASVNRLETEISALSDSELRERTDALKQ----------------RAQKGES---------------------------M 134
Cdd:PRK12901 23 IVEKIKAEYPELEALSNDELRAKTDEFKQyikeavadidakieelKAEAIESldiderediyaqidklekeayeilekvL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 135 DSLLPEAFAVVREASKRVLG---------------------------------------------LRPFDVQLIGGMVLH 169
Cdd:PRK12901 103 DEILPEAFAIVKETARRFAEneeievtatdfdrelaatkdfvtiegdkaiwknhwdaggneitwdMVHYDVQLIGGVVLH 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 170 KGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLI---QQNmtPEQRKENYLC 246
Cdd:PRK12901 183 QGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIdkhQPN--SEARRKAYNA 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 247 DITYVTNSELGFDYLRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQ------------YYKAA 314
Cdd:PRK12901 261 DITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGPVPKGDDQefeelkprverlVEAQR 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 315 KIASAF---------ERD-------------------------------------------------------IHYTVDE 330
Cdd:PRK12901 341 KLATQFlaeakkliaEGDkkegglallrayrglpknkalikflseegikallqktenfymqdnnrempevdeeLYFVIDE 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 331 KQKTVLLTEQGYED----------------AEEILDVKDLYDPREQ---------WASYVLNA---------IKAKELFL 376
Cdd:PRK12901 421 KNNSVELTDKGIDYitgndedpdffvlpdiGTELAEIENEGGLDEEeeaekkeelFQDYSVKServhtlnqlLKAYTLFE 500
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 377 RDVNYIIRAKEVLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEF 456
Cdd:PRK12901 501 KDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYHKLAGMTGTAETEAGEF 580
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 457 ESIYKLKVTIVPTNKPMIRKDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNA 536
Cdd:PRK12901 581 WDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNA 660
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 537 KPEnvEREAEIVAQSGRLGAVTIATNMAGRGTDIilggnaefmarlklreilmprvvkptdgvfvsvkkappkrtwkvne 616
Cdd:PRK12901 661 KLH--QKEAEIVAEAGQPGTVTIATNMAGRGTDI---------------------------------------------- 692
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 617 klfpcKLSNEkaklaeeavqsaveawgqkslteleaeerlsyscekgpvqdevigklrtaflaiakeykgytdeerkkVV 696
Cdd:PRK12901 693 -----KLSPE--------------------------------------------------------------------VK 699
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 697 EAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMMRAFRVEDLP-IESKMLTKALDE 775
Cdd:PRK12901 700 AAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMGLKEGEvIQHSMISKSIER 779
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 776 AQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDSLEPLIIEyaelTMDDILEANIgpDTPKESWDFEKLIAK 855
Cdd:PRK12901 780 AQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHALMGERLGMDIAN----MIYDVCEAIV--ENNKVANDYKGFKFE 853
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 856 VQQYCYLLNDLTPDLLKSEGssYEGLQDYLRARGRDAYLQKREIV----------------------------------- 900
Cdd:PRK12901 854 LIRTLAMESPITEEEFNKLK--KDELTDKLYDAALENYQRKMERIaeiafpvikqvyeeqgnmyerivvpftdgkrtlnv 931
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 901 --------EKQSPGLMKDAERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVI 972
Cdd:PRK12901 932 vtnlkeayETEGKEIVKDFEKNITLHIIDEAWKEHLREMDELKQSVQNASYEQKDPLLIYKFESFELFKNMVDKVNREVI 1011
|
1130 1140 1150 1160 1170
....*....|....*....|....*....|....*....|....*....|....*...
gi 15234320 973 YSIYQFQP-------VRVKKDEEKKSQNGKPSK-------QVDNASEKPKQVgVTDEP 1016
Cdd:PRK12901 1012 SFLFKGEIpvqeapeIREAAPERRLDPKYRTQKeeiqdsdQRAAASRDTGAQ-VKETP 1068
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
78-456 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 693.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 78 LSGIFkGSDNgESTRQQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRP 157
Cdd:smart00957 1 LKKLF-GSKN-DRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRH 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 158 FDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTP 237
Cdd:smart00957 79 FDVQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 238 EQRKENYLCDITYVTNSELGFDYLRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKP-SDQYYKAAKI 316
Cdd:smart00957 159 EERRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDEsSDLYHRADKF 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 317 ASAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDP-REQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFT 395
Cdd:smart00957 239 VPRLKEDEDYTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPeNIELLHHVNQALRAHYLFKRDVDYIVRDGEVVIVDEFT 318
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15234320 396 GRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEF 456
Cdd:smart00957 319 GRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEF 379
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
78-456 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 675.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 78 LSGIFkGSDNgESTRQQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRP 157
Cdd:pfam07517 1 LKKIF-GSPN-ERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRH 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 158 FDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTP 237
Cdd:pfam07517 79 YDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 238 EQRKENYLCDITYVTNSELGFDYLRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIA 317
Cdd:pfam07517 159 EERRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 318 SAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPR-EQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFTG 396
Cdd:pfam07517 239 KSLEEDGDYEIDEKSKNVELTEKGIEKIEKLLGIDNLYDPEnVELLHHINQALKAHHLFKRDVDYIVRDGEVVIVDEFTG 318
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 397 RVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEF 456
Cdd:pfam07517 319 RVMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEF 378
|
|
| secA2 |
TIGR03714 |
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA ... |
93-968 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 163426 [Multi-domain] Cd Length: 762 Bit Score: 658.65 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 93 QQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGE 172
Cdd:TIGR03714 7 KKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAIVLHQGN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 173 IAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGL-----IQQNMTPEQRKENYLCD 247
Cdd:TIGR03714 87 IAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLgvvddPDEEYDANEKRKIYNSD 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 248 ITYVTNSELGFDYLRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIASAFERDIHYT 327
Cdd:TIGR03714 167 IVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYI 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 328 VDEKQKTVLLTEQGYEDAEEILDVKDLYdpREQWASYV--LN-AIKAKELFLRDVNYIIRAKEVLIVDEFTGRVMQGRRW 404
Cdd:TIGR03714 247 FKKDKKEVWLTDKGIEKAEQYFKIDNLY--SEEYFELVrhINlALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKL 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 405 SDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPMIRKDESDVVFK 484
Cdd:TIGR03714 325 QSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYA 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 485 AVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVEREAEIVAQSGRLGAVTIATNMA 564
Cdd:TIGR03714 405 TLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQ--NAAKEAQIIAEAGQKGAVTVATSMA 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 565 GRGTDIILGgnaefmarlklreilmprvvkptdgvfvsvkkappkrtwkvneklfpcklsnekaklaeeavqsaveawgq 644
Cdd:TIGR03714 483 GRGTDIKLG----------------------------------------------------------------------- 491
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 645 kslteleaeerlsyscekgpvqdevigklrtaflaiakeykgytdeerKKVVEAGGLHVVGTERHESRRIDNQLRGRSGR 724
Cdd:TIGR03714 492 ------------------------------------------------KGVAELGGLAVIGTERMENSRVDLQLRGRSGR 523
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 725 QGDPGSSRFFLSLEDNIFRIFGGDRIQGMMRAFRVEDLPIESKML-----TKALDEAQRKVENYFFDIRKQLFEFDEVLN 799
Cdd:TIGR03714 524 QGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKYSVKDSKLKPSALfkrrfRKIVEKAQRASEDKGESAREQTNEFEESLS 603
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 800 SQRDRVYTERRRALVSDSLEpliieyaELTMDDILEANIGPDTPKESWDFEKLIAK--VQQYCYLLNDLtPDLLKSEGSs 877
Cdd:TIGR03714 604 IQRENIYAERNRLIEGSDFL-------DDDVDQIIDDVFNMYAEEQDLSNKSLLKRfiLENLSYQFKND-PDEFDLKNK- 674
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 878 yEGLQDYLRARGRDAYLQKREIVekQSPGLMKDAERFLILSNIDRLWKE---HLQALKFVqqaVGLRGYAQRDPLIEYKL 954
Cdd:TIGR03714 675 -EAIKDFLKEIADKELSEKKKVL--NNDYLFNDFERLSILKAIDENWIEqvdYLQQLKTV---VTNRQNGQRNPIFEYHK 748
|
890
....*....|....
gi 15234320 955 EGYNLFLEMMAQIR 968
Cdd:TIGR03714 749 EALESYEYMKKEIK 762
|
|
| secA |
PRK12898 |
preprotein translocase subunit SecA; Reviewed |
94-800 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237253 [Multi-domain] Cd Length: 656 Bit Score: 652.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 94 QYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESM-DSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGE 172
Cdd:PRK12898 40 RQRLLADRVLAAAEALAGLSEEALRARSLALRARLRARDGFrDALLAEAFALVREASGRVLGQRHFDVQLMGGLALLSGR 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 173 IAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYLCDITYVT 252
Cdd:PRK12898 120 LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAYGADITYCT 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 253 NSELGFDYLRDNLAT-------------------SVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQ--YY 311
Cdd:PRK12898 200 NKELVFDYLRDRLALgqrasdarlaleslhgrssRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAevYR 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 312 KAAKIASAFERDIHYTVDEKQKTVLLTEQGYEDAEEIldVKDLyDPREQWAS----YVLNAIKAKELFLRDVNYIIRAKE 387
Cdd:PRK12898 280 QALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAEL--AESL-PPAWRGAVrreeLVRQALSALHLFRRDEHYIVRDGK 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 388 VLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIV 467
Cdd:PRK12898 357 VVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRI 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 468 PTNKPMIRKDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVEREAEI 547
Cdd:PRK12898 437 PTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAK--QDAEEAAI 514
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 548 VAQSGRLGAVTIATNMAGRGTDIilggnaefmarlklreilmprvvkptdgvfvsvkkappkrtwkvneklfpcKLSNEk 627
Cdd:PRK12898 515 VARAGQRGRITVATNMAGRGTDI---------------------------------------------------KLEPG- 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 628 aklaeeavqsaveawgqkslteleaeerlsyscekgpvqdevigklrtaflaiakeykgytdeerkkVVEAGGLHVVGTE 707
Cdd:PRK12898 543 -------------------------------------------------------------------VAARGGLHVILTE 555
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 708 RHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMMRAfrVEDLPIESKMLTK-ALDEAQRKVENYFFD 786
Cdd:PRK12898 556 RHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFLGSRGLAIRRM--ELLGPRGGRALGAlLLRRAQRRAERLHAR 633
|
730
....*....|....
gi 15234320 787 IRKQLFEFDEVLNS 800
Cdd:PRK12898 634 ARRALLHADEQLDK 647
|
|
| SecA2_Mycobac |
TIGR04221 |
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the ... |
88-987 |
1.72e-177 |
|
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the SecA2 subunit of the Mycobacterial type of accessory secretory system. This family is quite different SecA2 of the Staph/Strep type (TIGR03714).
Pssm-ID: 275062 [Multi-domain] Cd Length: 762 Bit Score: 535.95 E-value: 1.72e-177
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 88 GESTRQQYAS--IVASVNRLETEISALSDSELRERTDALKQraqKGESMDslLPEAFAVVREASKRVLGLRPFDVQLIGG 165
Cdd:TIGR04221 11 SSTERNQKRSlaIVPAAASRMKELSALDDEELTKAARDLVL---SGEAAD--AAQFLAILREAAERTLGMRPFDVQLLGA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 166 MVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYL 245
Cdd:TIGR04221 86 LRLLAGDVIEMATGEGKTLAGAMAATGFALLGKRVHVVTVNDYLARRDAEWMGPLVDFFGLTVGWVTEDSTPDERRAAYA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 246 CDITYVTNSELGFDYLRDNLATSVEELVLRDFNYCVIDEVDSILIDEARTPLIISG--PAEKPSdqyYKAAKIASAFERD 323
Cdd:TIGR04221 166 CDVTYASVNEIGFDVLRDQLVTDRADLVQPAADVALIDEADSVLVDEALVPLVLAGnePGEAPR---GRITDLVRRLRED 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 324 IHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPREQWASYV-LN-AIKAKELFLRDVNYIIRAKEVLIVDEFTGRVMQG 401
Cdd:TIGR04221 243 KHYTVDEDGRNVHLTEDGARAVEAELGIDDLYSEEHVGTTLVqVNvALHAHALLIRDVHYIVRDGKVALIDASRGRVAQL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 402 RRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPMIRKDESDV 481
Cdd:TIGR04221 323 QRWPDGLQAAVEAKEGLEVTEGGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNTPNIRFDEADR 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 482 VFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVEREAEIVAQSGRLGAVTIAT 561
Cdd:TIGR04221 403 VYATAAEKNDAIVEEIAEVHKTGQPVLVGTQDVAESEELAEALLEAGVPCNVLNAK--NDAEEAAIIAEAGDIGAVTVST 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 562 NMAGRGTDIILGGNAEfmarlklreilmprvvkptdgvfvsvkkappkrtwkvneklfpcklsnekaklaeeavqsavea 641
Cdd:TIGR04221 481 QMAGRGTDIRLGGSDE---------------------------------------------------------------- 496
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 642 wgqkslteleaeerlsyscekgpvqdevigklrtaflaiakeykgyTDEERkkVVEAGGLHVVGTERHESRRIDNQLRGR 721
Cdd:TIGR04221 497 ----------------------------------------------ADHDR--VAELGGLHVIGTGRHRTARLDNQLRGR 528
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 722 SGRQGDPGSSRFFLSLEDNIFRIFG-GDRIQGMMRafrvEDLPIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNS 800
Cdd:TIGR04221 529 AGRQGDPGSSVFFVSLEDDVVAVGGaGETVPAQPA----EDGRIESPRVQDFVDHAQRVAEGQLLEIHANTWRYNQLIAQ 604
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 801 QRDRVYTERRRALVSDSlepliieyaeltmddileanigpdtpkeSWDfekliakvqqycyLLNDLTPDllksegssyeg 880
Cdd:TIGR04221 605 QRDIIDERRETLLDTDT----------------------------AWQ-------------ELSERAAD----------- 632
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 881 lqdylrargrdaylQKREIVEKQSPGLMKDAERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLF 960
Cdd:TIGR04221 633 --------------RAAELKKEVSEDALERAAREIMLYHLDRGWAEHLAYLDDVRESIHLRALGRETPLDEFHRMAVRAF 698
|
890 900
....*....|....*....|....*..
gi 15234320 961 LEMMAQIRRNviySIYQFQPVRVKKDE 987
Cdd:TIGR04221 699 KELAQRAVDK---AVETFEEVEIDADG 722
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
116-469 |
3.22e-136 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 408.85 E-value: 3.22e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 116 ELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNAL 195
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 196 SGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYLCDITYVTNSELGFDYLRDNLATSVEELVLR 275
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 276 DFNYCVIDEVDSILIDEARTPLIISGpaekpsdqyykaakiasaferdihytvdekqktvllteqgyedaeeildvkdly 355
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 356 dpreqwasyvlnaikakelflrdvnyiirakevlivdeftgrvmqgrrwsdglhqaveakeglpiqnesiTLASISYQNF 435
Cdd:cd17928 187 ----------------------------------------------------------------------TLATITFQNY 196
|
330 340 350
....*....|....*....|....*....|....
gi 15234320 436 FLQFPKLCGMTGTASTESAEFESIYKLKVTIVPT 469
Cdd:cd17928 197 FRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| SecA_SW |
pfam07516 |
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts ... |
763-979 |
5.41e-77 |
|
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.
Pssm-ID: 462189 [Multi-domain] Cd Length: 213 Bit Score: 251.26 E-value: 5.41e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 763 PIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDSLEPLIIEYAELTMDDILEANIGPDT 842
Cdd:pfam07516 1 PIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNQQREVIYAQRREILEGEDLKEDILEMIEDVVDDIVDEYIPPEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 843 PKESWDFEKLIAKVQQYcYLLNDLTPDLLKSEGSSYEGLQDYLRARGRDAYLQKREIVekqSPGLMKDAERFLILSNIDR 922
Cdd:pfam07516 81 SPEEWDLEGLKEALNEI-FGLELPISEWEEEEDLDKEELKERLLEAAEEAYEEKEEEI---GPELMRELERVVLLQVIDS 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 15234320 923 LWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFQ 979
Cdd:pfam07516 157 KWKEHLDAMDQLRQGIGLRAYGQKDPLVEYKREGFELFEEMLDAIREEVVRYLFRVQ 213
|
|
| SF2_C_secA |
cd18803 |
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the ... |
475-736 |
3.01e-69 |
|
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350190 [Multi-domain] Cd Length: 141 Bit Score: 227.05 E-value: 3.01e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 475 RKDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVEREAEIVAQSGRL 554
Cdd:cd18803 1 RKDLPDLVYKTEEEKWKAIVEEVKELHAKGQPVLVGTRSVEKSELLSALLKEEGIPHNVLNAK--NHAREAEIIAEAGQK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 555 GAVTIATNMAGRGTDIILGGNAEfmarlklreilmprvvkptdgvfvsvkkappkrtwkvneklfpcklsnekaklaeea 634
Cdd:cd18803 79 GAVTIATNMAGRGTDIKLGGNVE--------------------------------------------------------- 101
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 635 vqsaveawgqkslteleaeerlsyscekgpvqdevigklrtaflaiakeykgytdeerkkvvEAGGLHVVGTERHESRRI 714
Cdd:cd18803 102 --------------------------------------------------------------ELGGLHVIGTERHESRRI 119
|
250 260
....*....|....*....|..
gi 15234320 715 DNQLRGRSGRQGDPGSSRFFLS 736
Cdd:cd18803 120 DNQLRGRAGRQGDPGSSRFYLS 141
|
|
| SecA_PP_bind |
pfam01043 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
305-413 |
1.00e-51 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 460039 [Multi-domain] Cd Length: 110 Bit Score: 176.83 E-value: 1.00e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 305 KPSDQYYKAAKIASAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPRE-QWASYVLNAIKAKELFLRDVNYII 383
Cdd:pfam01043 1 KSTELYRQADKFVKQLKEDEDYEVDEKAKTVELTEEGIEKAEKLLGIDNLYDPENiELVHHINQALKAHHLFKRDVDYIV 80
|
90 100 110
....*....|....*....|....*....|
gi 15234320 384 RAKEVLIVDEFTGRVMQGRRWSDGLHQAVE 413
Cdd:pfam01043 81 KDGEVVIVDEFTGRLMPGRRYSDGLHQAIE 110
|
|
| SecA_PP_bind |
smart00958 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
302-413 |
1.61e-50 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 214938 [Multi-domain] Cd Length: 114 Bit Score: 173.41 E-value: 1.61e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 302 PAEKPSDQYYKAAKIASAFERDI-HYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPRE-QWASYVLNAIKAKELFLRDV 379
Cdd:smart00958 1 PAEDSSELYKRADELVPTLKKDEeDYEVDEKSRQVALTEEGIEKAEKLLGIDNLYDPENiELVHHVNQALRAHKLFKRDV 80
|
90 100 110
....*....|....*....|....*....|....
gi 15234320 380 NYIIRAKEVLIVDEFTGRVMQGRRWSDGLHQAVE 413
Cdd:smart00958 81 DYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIE 114
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
169-298 |
2.35e-19 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 85.53 E-value: 2.35e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 169 HKGEIAEMRTGEGKTLVAILPAYLNALS-GKGVHVVTVNDYLARRDCEWVgQVPRFLGLKVGLIQQNMTPEQRKEN--YL 245
Cdd:cd00046 1 GENVLITAPTGSGKTLAALLAALLLLLKkGKKVLVLVPTKALALQTAERL-RELFGPGIRVAVLVGGSSAEEREKNklGD 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 15234320 246 CDITYVTNSELGFDYLRDNLatsveeLVLRDFNYCVIDEVDSILIDEARTPLI 298
Cdd:cd00046 80 ADIIIATPDMLLNLLLREDR------LFLKDLKLIIVDEAHALLIDSRGALIL 126
|
|
| DEAD-like_helicase_N |
cd17912 |
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ... |
171-213 |
1.92e-09 |
|
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.
Pssm-ID: 350670 [Multi-domain] Cd Length: 81 Bit Score: 55.22 E-value: 1.92e-09
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 15234320 171 GEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRD 213
Cdd:cd17912 1 NILHLGPTGSGKTLVAIQKIASAMSSGKSVLVVTPTKLLAHEI 43
|
|
| DEAD-like_helicase_C |
cd09300 |
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases ... |
699-734 |
1.59e-06 |
|
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases is composed of two superfamilies, SF1 and SF2, that share almost identical folds and extensive structural similarity in their catalytic core. Helicases are involved in ATP-dependent RNA or DNA unwinding. Two distinct types of helicases exist, those forming toroidal, predominantly hexameric structures, and those that do not. SF1 and SF2 helicases do not form toroidal structures, while SF3-6 helicases do. Their conserved helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350171 [Multi-domain] Cd Length: 59 Bit Score: 46.00 E-value: 1.59e-06
10 20 30
....*....|....*....|....*....|....*.
gi 15234320 699 GGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFF 734
Cdd:cd09300 23 ELNTIIVDKNLRSYRGLNQAFGRANRIYTFGGIVTY 58
|
|
| DEXDc |
smart00487 |
DEAD-like helicases superfamily; |
150-299 |
6.23e-06 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain] Cd Length: 201 Bit Score: 48.26 E-value: 6.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 150 KRVLGLRPFDVQLIGGMVLHKGE---IAEMRTGEGKTLVAILPAYLNALSGKGVHVV-------TVNDyLARRDCEWVgq 219
Cdd:smart00487 2 EKFGFEPLRPYQKEAIEALLSGLrdvILAAPTGSGKTLAALLPALEALKRGKGGRVLvlvptreLAEQ-WAEELKKLG-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 220 vPRFLGLKVGLIQQNMTPEQRKE--NYLCDITYVTnselgFDYLRDNLATsvEELVLRDFNYCVIDEVDSILiDEARTPL 297
Cdd:smart00487 79 -PSLGLKVVGLYGGDSKREQLRKleSGKTDILVTT-----PGRLLDLLEN--DKLSLSNVDLVILDEAHRLL-DGGFGDQ 149
|
..
gi 15234320 298 II 299
Cdd:smart00487 150 LE 151
|
|
| DEAD |
pfam00270 |
DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. ... |
173-289 |
3.03e-04 |
|
DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Pssm-ID: 425570 [Multi-domain] Cd Length: 165 Bit Score: 42.61 E-value: 3.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 173 IAEMRTGEGKTLVAILPAyLNALSGKGVHVVTVndYLA--R-------RDCEWVGQvprFLGLKVGLIQQNMTP-EQRKE 242
Cdd:pfam00270 18 LVQAPTGSGKTLAFLLPA-LEALDKLDNGPQAL--VLAptRelaeqiyEELKKLGK---GLGLKVASLLGGDSRkEQLEK 91
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 15234320 243 NYLCDITYVTnselgFDYLRDNLATSVEelvLRDFNYCVIDEVDSIL 289
Cdd:pfam00270 92 LKGPDILVGT-----PGRLLDLLQERKL---LKNLKLLVLDEAHRLL 130
|
|
| SSL2 |
COG1061 |
Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair]; |
491-570 |
4.03e-04 |
|
Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair];
Pssm-ID: 440681 [Multi-domain] Cd Length: 566 Bit Score: 44.25 E-value: 4.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 491 RAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKPENVEREaEIVAQ--SGRLgAVTIATNMAGRGT 568
Cdd:COG1061 292 DKILRELLREHPDDRKTLVFCSSVDHAEALAELLNEAGIRAAVVTGDTPKKERE-EILEAfrDGEL-RILVTVDVLNEGV 369
|
..
gi 15234320 569 DI 570
Cdd:COG1061 370 DV 371
|
|
| SF2_C_DEAD |
cd18787 |
C-terminal helicase domain of the DEAD box helicases; DEAD-box helicases comprise a diverse ... |
489-570 |
1.37e-03 |
|
C-terminal helicase domain of the DEAD box helicases; DEAD-box helicases comprise a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis, and RNA degradation. They are superfamily (SF)2 helicases that, similar to SF1, do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350174 [Multi-domain] Cd Length: 131 Bit Score: 39.80 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234320 489 KWRAVVVEISRMHKTGRaVLVGTTSVEQSDELSQLLREAGITHEVLNAKPENVEREaEIVAQ--SGRLGaVTIATNMAGR 566
Cdd:cd18787 13 KKLLLLLLLLEKLKPGK-AIIFVNTKKRVDRLAELLEELGIKVAALHGDLSQEERE-RALKKfrSGKVR-VLVATDVAAR 89
|
....
gi 15234320 567 GTDI 570
Cdd:cd18787 90 GLDI 93
|
|
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