Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]
F-box/kelch-repeat protein( domain architecture ID 17778853)
F-box/kelch-repeat protein may be a component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
F-box_AtAFR-like | cd22152 | F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ... |
12-56 | 6.15e-15 | ||||
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. : Pssm-ID: 438923 Cd Length: 45 Bit Score: 67.98 E-value: 6.15e-15
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NanM super family | cl34543 | N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
104-251 | 1.81e-09 | ||||
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; The actual alignment was detected with superfamily member COG3055: Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 57.86 E-value: 1.81e-09
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Name | Accession | Description | Interval | E-value | ||||
F-box_AtAFR-like | cd22152 | F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ... |
12-56 | 6.15e-15 | ||||
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 438923 Cd Length: 45 Bit Score: 67.98 E-value: 6.15e-15
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NanM | COG3055 | N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
104-251 | 1.81e-09 | ||||
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 57.86 E-value: 1.81e-09
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F-box | pfam00646 | F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ... |
13-55 | 1.61e-07 | ||||
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 425796 Cd Length: 43 Bit Score: 47.15 E-value: 1.61e-07
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FBOX | smart00256 | A Receptor for Ubiquitination Targets; |
16-56 | 8.74e-06 | ||||
A Receptor for Ubiquitination Targets; Pssm-ID: 197608 Cd Length: 41 Bit Score: 42.04 E-value: 8.74e-06
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PLN02153 | PLN02153 | epithiospecifier protein |
124-214 | 5.33e-05 | ||||
epithiospecifier protein Pssm-ID: 177814 [Multi-domain] Cd Length: 341 Bit Score: 44.59 E-value: 5.33e-05
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Kelch_1 | pfam01344 | Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
146-191 | 1.70e-04 | ||||
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 38.75 E-value: 1.70e-04
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Kelch | smart00612 | Kelch domain; |
154-195 | 1.70e-03 | ||||
Kelch domain; Pssm-ID: 128874 [Multi-domain] Cd Length: 47 Bit Score: 36.00 E-value: 1.70e-03
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Name | Accession | Description | Interval | E-value | ||||
F-box_AtAFR-like | cd22152 | F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ... |
12-56 | 6.15e-15 | ||||
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 438923 Cd Length: 45 Bit Score: 67.98 E-value: 6.15e-15
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NanM | COG3055 | N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
104-251 | 1.81e-09 | ||||
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 57.86 E-value: 1.81e-09
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F-box | pfam00646 | F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ... |
13-55 | 1.61e-07 | ||||
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 425796 Cd Length: 43 Bit Score: 47.15 E-value: 1.61e-07
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NanM | COG3055 | N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
104-212 | 2.03e-07 | ||||
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 51.70 E-value: 2.03e-07
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NanM | COG3055 | N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
134-293 | 3.85e-06 | ||||
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 47.84 E-value: 3.85e-06
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FBOX | smart00256 | A Receptor for Ubiquitination Targets; |
16-56 | 8.74e-06 | ||||
A Receptor for Ubiquitination Targets; Pssm-ID: 197608 Cd Length: 41 Bit Score: 42.04 E-value: 8.74e-06
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PLN02153 | PLN02153 | epithiospecifier protein |
124-214 | 5.33e-05 | ||||
epithiospecifier protein Pssm-ID: 177814 [Multi-domain] Cd Length: 341 Bit Score: 44.59 E-value: 5.33e-05
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PLN02193 | PLN02193 | nitrile-specifier protein |
106-220 | 5.62e-05 | ||||
nitrile-specifier protein Pssm-ID: 177844 [Multi-domain] Cd Length: 470 Bit Score: 44.95 E-value: 5.62e-05
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Kelch_1 | pfam01344 | Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
146-191 | 1.70e-04 | ||||
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 38.75 E-value: 1.70e-04
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NanM | COG3055 | N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
98-251 | 7.20e-04 | ||||
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 40.91 E-value: 7.20e-04
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Kelch | smart00612 | Kelch domain; |
154-195 | 1.70e-03 | ||||
Kelch domain; Pssm-ID: 128874 [Multi-domain] Cd Length: 47 Bit Score: 36.00 E-value: 1.70e-03
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Kelch_6 | pfam13964 | Kelch motif; |
150-190 | 2.06e-03 | ||||
Kelch motif; Pssm-ID: 404790 [Multi-domain] Cd Length: 50 Bit Score: 35.77 E-value: 2.06e-03
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Kelch_4 | pfam13418 | Galactose oxidase, central domain; |
146-190 | 6.96e-03 | ||||
Galactose oxidase, central domain; Pssm-ID: 433191 [Multi-domain] Cd Length: 49 Bit Score: 34.12 E-value: 6.96e-03
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Blast search parameters | ||||
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