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Conserved domains on  [gi|240255727|ref|NP_192218|]
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sequence-specific DNA binding transcription factor ATNDX [Arabidopsis thaliana]

Protein Classification

homeobox domain-containing protein( domain architecture ID 10647766)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

CATH:  1.10.10.60
Gene Ontology:  GO:0003677
PubMed:  21557080|26464018|27768937|1357790
SCOP:  4000291

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 698-760 1.55e-03

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


:

Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 37.61  E-value: 1.55e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 240255727   698 KKRKRSIMNADQMGMIEKALAEEPDLqrNSASRQLWADKISqkgsevITSSQLKNWLNNRKAK 760
Cdd:smart00389   1 KRRKRTSFTPEQLEELEKEFQKNPYP--SREEREELAKKLG------LSERQVKVWFQNRRAK 55
 
Name Accession Description Interval E-value
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 698-760 1.55e-03

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 37.61  E-value: 1.55e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 240255727   698 KKRKRSIMNADQMGMIEKALAEEPDLqrNSASRQLWADKISqkgsevITSSQLKNWLNNRKAK 760
Cdd:smart00389   1 KRRKRTSFTPEQLEELEKEFQKNPYP--SREEREELAKKLG------LSERQVKVWFQNRRAK 55
 
Name Accession Description Interval E-value
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 698-760 1.55e-03

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 37.61  E-value: 1.55e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 240255727   698 KKRKRSIMNADQMGMIEKALAEEPDLqrNSASRQLWADKISqkgsevITSSQLKNWLNNRKAK 760
Cdd:smart00389   1 KRRKRTSFTPEQLEELEKEFQKNPYP--SREEREELAKKLG------LSERQVKVWFQNRRAK 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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