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Conserved domains on  [gi|186511742|ref|NP_193111|]
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Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Arabidopsis thaliana]

Protein Classification

DUF3883 domain-containing protein( domain architecture ID 10586550)

DUF3883 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NOV_C pfam13020
Protein NO VEIN, C-terminal; This domain of unknown function is found at the C-terminal of ...
 2608-2698 2.91e-23

Protein NO VEIN, C-terminal; This domain of unknown function is found at the C-terminal of Protein NO VEIN from Arabidopsis, a protein essential for cell fate determination during embryogenesis. It mediates this process through an auxin-dependent pathway. This domain is also found in some restriction endonucleases.


:

Pssm-ID: 463774  Cd Length: 91  Bit Score: 96.17  E-value: 2.91e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511742  2608 GEEIAYRYFVAKYGNEAlVKWVNDQSETGLPYDLMIENRGGKKEYVEVKATVStRKDYFNLTVREWQFANEKGESYIIAH 2687
Cdd:pfam13020    1 GERLAIEYVMAREKELG-VGWVNEDVEDGLGYDILSFDPDGEERFIEVKGTAK-GKTTFFLTRNEWEFALEYGDKYWLYR 78

                           90
                   ....*....|.
gi 186511742  2688 VLLGNSNAILT 2698
Cdd:pfam13020   79 VYNAGDAPKVF 89
 
Name Accession Description Interval E-value
NOV_C pfam13020
Protein NO VEIN, C-terminal; This domain of unknown function is found at the C-terminal of ...
 2608-2698 2.91e-23

Protein NO VEIN, C-terminal; This domain of unknown function is found at the C-terminal of Protein NO VEIN from Arabidopsis, a protein essential for cell fate determination during embryogenesis. It mediates this process through an auxin-dependent pathway. This domain is also found in some restriction endonucleases.


Pssm-ID: 463774  Cd Length: 91  Bit Score: 96.17  E-value: 2.91e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511742  2608 GEEIAYRYFVAKYGNEAlVKWVNDQSETGLPYDLMIENRGGKKEYVEVKATVStRKDYFNLTVREWQFANEKGESYIIAH 2687
Cdd:pfam13020    1 GERLAIEYVMAREKELG-VGWVNEDVEDGLGYDILSFDPDGEERFIEVKGTAK-GKTTFFLTRNEWEFALEYGDKYWLYR 78

                           90
                   ....*....|.
gi 186511742  2688 VLLGNSNAILT 2698
Cdd:pfam13020   79 VYNAGDAPKVF 89
 
Name Accession Description Interval E-value
NOV_C pfam13020
Protein NO VEIN, C-terminal; This domain of unknown function is found at the C-terminal of ...
 2608-2698 2.91e-23

Protein NO VEIN, C-terminal; This domain of unknown function is found at the C-terminal of Protein NO VEIN from Arabidopsis, a protein essential for cell fate determination during embryogenesis. It mediates this process through an auxin-dependent pathway. This domain is also found in some restriction endonucleases.


Pssm-ID: 463774  Cd Length: 91  Bit Score: 96.17  E-value: 2.91e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511742  2608 GEEIAYRYFVAKYGNEAlVKWVNDQSETGLPYDLMIENRGGKKEYVEVKATVStRKDYFNLTVREWQFANEKGESYIIAH 2687
Cdd:pfam13020    1 GERLAIEYVMAREKELG-VGWVNEDVEDGLGYDILSFDPDGEERFIEVKGTAK-GKTTFFLTRNEWEFALEYGDKYWLYR 78

                           90
                   ....*....|.
gi 186511742  2688 VLLGNSNAILT 2698
Cdd:pfam13020   79 VYNAGDAPKVF 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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