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Conserved domains on  [gi|15233571|ref|NP_194672|]
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ribosomal protein S15A E [Arabidopsis thaliana]

Protein Classification

uS8 family ribosomal protein; 30S ribosomal protein S8( domain architecture ID 10010655)

uS8 family ribosomal protein such as yeast 40S ribosomal protein S22, plant 40S ribosomal protein S15a, archaea 30S ribosomal protein S8P, and yeast mitochondrial 37S ribosomal protein S8| mitochondrial 37S ribosomal protein S8, related to 30S ribosomal protein S8 which binds directly to the 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00146 PLN00146
40S ribosomal protein S15a; Provisional
 1-129 6.33e-84

40S ribosomal protein S15a; Provisional


:

Pssm-ID: 215075  Cd Length: 130  Bit Score: 241.05  E-value: 6.33e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233571    1 MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTYRQDV 80
Cdd:PLN00146   2 VRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKIVVELNGRLNKCGVISPRFDV 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 15233571   81 RAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129
Cdd:PLN00146  82 KVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
 
Name Accession Description Interval E-value
PLN00146 PLN00146
40S ribosomal protein S15a; Provisional
 1-129 6.33e-84

40S ribosomal protein S15a; Provisional


Pssm-ID: 215075  Cd Length: 130  Bit Score: 241.05  E-value: 6.33e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233571    1 MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTYRQDV 80
Cdd:PLN00146   2 VRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKIVVELNGRLNKCGVISPRFDV 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 15233571   81 RAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129
Cdd:PLN00146  82 KVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Ribosomal_S8 pfam00410
Ribosomal protein S8;
6-129 5.12e-20

Ribosomal protein S8;


Pssm-ID: 425667  Cd Length: 127  Bit Score: 78.99  E-value: 5.12e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233571     6 LNDALRTIVNAERRGKASVELkPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVdlqgrvndckALTYRQDVRA--- 82
Cdd:pfam00410   3 IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRI----------TLKYNKGEPVikg 71

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15233571    83 -KEIEK-----YTERT-LPTRQWGY--VVITTPDGILDHEEAIKRNVGGQVLGFFY 129
Cdd:pfam00410  72 lKRISKpglrvYVGKDeLPRVLNGLgiAILSTSKGVMTDKEARKKGVGGEVLCYVW 127
 
Name Accession Description Interval E-value
PLN00146 PLN00146
40S ribosomal protein S15a; Provisional
 1-129 6.33e-84

40S ribosomal protein S15a; Provisional


Pssm-ID: 215075  Cd Length: 130  Bit Score: 241.05  E-value: 6.33e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233571    1 MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTYRQDV 80
Cdd:PLN00146   2 VRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKIVVELNGRLNKCGVISPRFDV 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 15233571   81 RAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129
Cdd:PLN00146  82 KVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 5-129 1.17e-52

40S ribosomal protein S15A; Provisional


Pssm-ID: 185487  Cd Length: 130  Bit Score: 162.20  E-value: 1.17e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233571    5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTYRQDVRAKE 84
Cdd:PTZ00158   6 VLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFDVTLGE 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 15233571   85 IEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129
Cdd:PTZ00158  86 FEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
rps8p PRK04034
30S ribosomal protein S8P; Reviewed
 1-129 6.48e-42

30S ribosomal protein S8P; Reviewed


Pssm-ID: 179721  Cd Length: 130  Bit Score: 134.97  E-value: 6.48e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233571    1 MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTYRQDV 80
Cdd:PRK04034   2 VLLDPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQDEGYIGEFEYIDDGRAGKFKVELLGRINKCGAIKPRYPV 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 15233571   81 RAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129
Cdd:PRK04034  82 KYDEFEKWEKRYLPARDFGILIVSTSKGVMSHKEAREKGIGGVLLAYVY 130
Ribosomal_S8 pfam00410
Ribosomal protein S8;
6-129 5.12e-20

Ribosomal protein S8;


Pssm-ID: 425667  Cd Length: 127  Bit Score: 78.99  E-value: 5.12e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233571     6 LNDALRTIVNAERRGKASVELkPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVdlqgrvndckALTYRQDVRA--- 82
Cdd:pfam00410   3 IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRI----------TLKYNKGEPVikg 71

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15233571    83 -KEIEK-----YTERT-LPTRQWGY--VVITTPDGILDHEEAIKRNVGGQVLGFFY 129
Cdd:pfam00410  72 lKRISKpglrvYVGKDeLPRVLNGLgiAILSTSKGVMTDKEARKKGVGGEVLCYVW 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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