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Conserved domains on  [gi|15235972|ref|NP_194880|]
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SDA1 family protein [Arabidopsis thaliana]

Protein Classification

SDA1 family protein( domain architecture ID 11173741)

SDA1 family protein similar to Saccharomyces cerevisiae SDA1 (severe depolymerization of actin protein 1) that is required for 60S pre-ribosomal subunits export to the cytoplasm

Gene Ontology:  GO:0042273|GO:0015031|GO:0000055
PubMed:  11160833|10704371

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SDA1 pfam05285
SDA1; This family consists of several SDA1 protein homologs. SDA1 is a Saccharomyces ...
365-696 2.48e-60

SDA1; This family consists of several SDA1 protein homologs. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localized in the nucleus.


:

Pssm-ID: 461611 [Multi-domain]  Cd Length: 257  Bit Score: 203.22  E-value: 2.48e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   365 MTEDLLHDLAQYKTDKkyrthRKAISAASASLIALFREINPLLLVKKDRGRPGGPIAR---PKKYGEVNVFSNVPNVDLL 441
Cdd:pfam05285   1 MNEDLLQDLVEYKKSK-----DKGVMMAARSLISLYREVNPELLKKKDRGKPATMGLRerkPLKFGEEEVGDGIEGLELL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   442 QESDDDevalpgsddieqelitEDEAEEDSNDGDDMNNTEDdtlvsgdeeEEKNDSDEAETDWENEEDEGEASVEGSgnr 521
Cdd:pfam05285  76 EKWKEE----------------ERKRKREEEDEDDWEDWEV---------ESDDDSDDSEGGWIDVESDDEIEISDS--- 127
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   522 ekakgkkrklvdfdaslLAADTslralkrcaeaereqtsfaerdgILSNEDFRKIKEVKGKKDAKlalarkglKVPDSDK 601
Cdd:pfam05285 128 -----------------LATTR-----------------------ILTPADFAKLQELRAEAAVK--------KALGSAK 159
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   602 LSKK--LVNPAKLEAHI-RQKLIKEERLELVKAGREDRGKYKSKTAIKQKKTGGSSNRQKEHKKNMPLAAVRSKAGKAKR 678
Cdd:pfam05285 160 RRKKdeLVTASDIEGPAkKRKQTKEERIASVKEGREDREKFGSKKAKKEAPGKSTTNKEKARKKNFMMTLHKAKGKKKRS 239
                         330
                  ....*....|....*...
gi 15235972   679 VKKMKNSHSGSQFRGRKA 696
Cdd:pfam05285 240 LRDKQKVLRAHIERQKKG 257
NUC130_3NT pfam08158
NUC130/3NT domain; This N terminal domain is found in a novel nucleolar protein family.
2-51 6.04e-16

NUC130/3NT domain; This N terminal domain is found in a novel nucleolar protein family.


:

Pssm-ID: 462384  Cd Length: 50  Bit Score: 72.10  E-value: 6.04e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15235972     2 FLAHVTPFYPNQLAAFPAQLTDLLRTSCLAMPSGLRYQVAQSLILLMNRK 51
Cdd:pfam08158   1 FLAQVAHCYPKETAEFPQELIDLLLNHHAVLDPDLREKLVQALILLRNKD 50
 
Name Accession Description Interval E-value
SDA1 pfam05285
SDA1; This family consists of several SDA1 protein homologs. SDA1 is a Saccharomyces ...
365-696 2.48e-60

SDA1; This family consists of several SDA1 protein homologs. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localized in the nucleus.


Pssm-ID: 461611 [Multi-domain]  Cd Length: 257  Bit Score: 203.22  E-value: 2.48e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   365 MTEDLLHDLAQYKTDKkyrthRKAISAASASLIALFREINPLLLVKKDRGRPGGPIAR---PKKYGEVNVFSNVPNVDLL 441
Cdd:pfam05285   1 MNEDLLQDLVEYKKSK-----DKGVMMAARSLISLYREVNPELLKKKDRGKPATMGLRerkPLKFGEEEVGDGIEGLELL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   442 QESDDDevalpgsddieqelitEDEAEEDSNDGDDMNNTEDdtlvsgdeeEEKNDSDEAETDWENEEDEGEASVEGSgnr 521
Cdd:pfam05285  76 EKWKEE----------------ERKRKREEEDEDDWEDWEV---------ESDDDSDDSEGGWIDVESDDEIEISDS--- 127
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   522 ekakgkkrklvdfdaslLAADTslralkrcaeaereqtsfaerdgILSNEDFRKIKEVKGKKDAKlalarkglKVPDSDK 601
Cdd:pfam05285 128 -----------------LATTR-----------------------ILTPADFAKLQELRAEAAVK--------KALGSAK 159
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   602 LSKK--LVNPAKLEAHI-RQKLIKEERLELVKAGREDRGKYKSKTAIKQKKTGGSSNRQKEHKKNMPLAAVRSKAGKAKR 678
Cdd:pfam05285 160 RRKKdeLVTASDIEGPAkKRKQTKEERIASVKEGREDREKFGSKKAKKEAPGKSTTNKEKARKKNFMMTLHKAKGKKKRS 239
                         330
                  ....*....|....*...
gi 15235972   679 VKKMKNSHSGSQFRGRKA 696
Cdd:pfam05285 240 LRDKQKVLRAHIERQKKG 257
NUC130_3NT pfam08158
NUC130/3NT domain; This N terminal domain is found in a novel nucleolar protein family.
2-51 6.04e-16

NUC130/3NT domain; This N terminal domain is found in a novel nucleolar protein family.


Pssm-ID: 462384  Cd Length: 50  Bit Score: 72.10  E-value: 6.04e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15235972     2 FLAHVTPFYPNQLAAFPAQLTDLLRTSCLAMPSGLRYQVAQSLILLMNRK 51
Cdd:pfam08158   1 FLAQVAHCYPKETAEFPQELIDLLLNHHAVLDPDLREKLVQALILLRNKD 50
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
442-522 1.96e-04

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 44.78  E-value: 1.96e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 442 QESDDDEvalpgSDDIEQELITEDEAEEDSNDGDDMNNTEDDTLVSGDEEEEKNDSDEAETDWENEEDEGEASVEGSGNR 521
Cdd:COG4547 216 DEEDEDD-----EDDSGEQEEDEEDGEDEDEESDEGAEAEDAEASGDDAEEGESEAAEAESDEMAEEAEGEDSEEPGEPW 290

                .
gi 15235972 522 E 522
Cdd:COG4547 291 R 291
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
467-680 2.09e-03

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 41.12  E-value: 2.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972  467 AEEDSNDGDDMNNTEDDTLvsgdEEEEKNDSDEAETDWENEEDEGEASVEGSGNREKAKGKKRKLvdfdASLLAADTSLR 546
Cdd:PRK07735  38 EEENREKEKALPKNDDMTI----EEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAA----AAAKAKAAALA 109
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972  547 ALKRCAEAEREQTSFAERDGILSNEDFRKIKEVKGKKDAKLALARKGLKVPDSDKLSKKLVNPAKLEAHIRQK------- 619
Cdd:PRK07735 110 KQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKqkaaeag 189
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15235972  620 ----LIKEERLELVKAGREDRGKYKSKTAIKQKKTGGSSNRQKEHKKNMPLAAVRSKAGKAKRVK 680
Cdd:PRK07735 190 egteEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAARAK 254
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
418-523 2.69e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 41.13  E-value: 2.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972    418 GPIARPKKYGEVNVFSNVPNVDLLQESDDDEVALPGSDdiEQELITEDEAE----------EDSNDGDDMNNTEDDtlvs 487
Cdd:TIGR00927  796 GAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETG--EQELNAENQGEakqdekgvdgGGGSDGGDSEEEEEE---- 869
                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 15235972    488 gDEEEEKNDSDEAETDWENEEDEGEASVEGSGNREK 523
Cdd:TIGR00927  870 -EEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQK 904
 
Name Accession Description Interval E-value
SDA1 pfam05285
SDA1; This family consists of several SDA1 protein homologs. SDA1 is a Saccharomyces ...
365-696 2.48e-60

SDA1; This family consists of several SDA1 protein homologs. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localized in the nucleus.


Pssm-ID: 461611 [Multi-domain]  Cd Length: 257  Bit Score: 203.22  E-value: 2.48e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   365 MTEDLLHDLAQYKTDKkyrthRKAISAASASLIALFREINPLLLVKKDRGRPGGPIAR---PKKYGEVNVFSNVPNVDLL 441
Cdd:pfam05285   1 MNEDLLQDLVEYKKSK-----DKGVMMAARSLISLYREVNPELLKKKDRGKPATMGLRerkPLKFGEEEVGDGIEGLELL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   442 QESDDDevalpgsddieqelitEDEAEEDSNDGDDMNNTEDdtlvsgdeeEEKNDSDEAETDWENEEDEGEASVEGSgnr 521
Cdd:pfam05285  76 EKWKEE----------------ERKRKREEEDEDDWEDWEV---------ESDDDSDDSEGGWIDVESDDEIEISDS--- 127
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   522 ekakgkkrklvdfdaslLAADTslralkrcaeaereqtsfaerdgILSNEDFRKIKEVKGKKDAKlalarkglKVPDSDK 601
Cdd:pfam05285 128 -----------------LATTR-----------------------ILTPADFAKLQELRAEAAVK--------KALGSAK 159
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   602 LSKK--LVNPAKLEAHI-RQKLIKEERLELVKAGREDRGKYKSKTAIKQKKTGGSSNRQKEHKKNMPLAAVRSKAGKAKR 678
Cdd:pfam05285 160 RRKKdeLVTASDIEGPAkKRKQTKEERIASVKEGREDREKFGSKKAKKEAPGKSTTNKEKARKKNFMMTLHKAKGKKKRS 239
                         330
                  ....*....|....*...
gi 15235972   679 VKKMKNSHSGSQFRGRKA 696
Cdd:pfam05285 240 LRDKQKVLRAHIERQKKG 257
NUC130_3NT pfam08158
NUC130/3NT domain; This N terminal domain is found in a novel nucleolar protein family.
2-51 6.04e-16

NUC130/3NT domain; This N terminal domain is found in a novel nucleolar protein family.


Pssm-ID: 462384  Cd Length: 50  Bit Score: 72.10  E-value: 6.04e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15235972     2 FLAHVTPFYPNQLAAFPAQLTDLLRTSCLAMPSGLRYQVAQSLILLMNRK 51
Cdd:pfam08158   1 FLAQVAHCYPKETAEFPQELIDLLLNHHAVLDPDLREKLVQALILLRNKD 50
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
442-522 1.96e-04

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 44.78  E-value: 1.96e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 442 QESDDDEvalpgSDDIEQELITEDEAEEDSNDGDDMNNTEDDTLVSGDEEEEKNDSDEAETDWENEEDEGEASVEGSGNR 521
Cdd:COG4547 216 DEEDEDD-----EDDSGEQEEDEEDGEDEDEESDEGAEAEDAEASGDDAEEGESEAAEAESDEMAEEAEGEDSEEPGEPW 290

                .
gi 15235972 522 E 522
Cdd:COG4547 291 R 291
COG5137 COG5137
Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics] ...
436-525 2.94e-04

Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics];


Pssm-ID: 227466 [Multi-domain]  Cd Length: 279  Bit Score: 43.45  E-value: 2.94e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 436 PNVDLLQESDDDEVALP-GSDDIEQELITEDEAEEDSNDGDDMNNTEDDT--LVSGDEEEEKNDSDEAETDWENEEDEGE 512
Cdd:COG5137 118 PGITKLEKSDVEEPSEKvDEEDVEREILAEKPRVTRFNIVWDNDEDNDEAppAQPDVDNEEEERLEESDGREEEEDEEVG 197
                        90
                ....*....|...
gi 15235972 513 ASVEGSGNREKAK 525
Cdd:COG5137 198 SDSYGEGNRELNE 210
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
456-518 3.06e-04

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 44.01  E-value: 3.06e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15235972 456 DIEQELiTEDEAEEDSNDGDDMNNTEDDTLVSGDEEEEKNDSDEAETDWENEEDEGEASVEGS 518
Cdd:COG4547 206 DLAEEL-GEDEDEEDEDDEDDSGEQEEDEEDGEDEDEESDEGAEAEDAEASGDDAEEGESEAA 267
BMS1 COG5192
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and ...
428-683 3.52e-04

GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis];


Pssm-ID: 227519 [Multi-domain]  Cd Length: 1077  Bit Score: 43.96  E-value: 3.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972  428 EVNVFSNVPNVDLL--QESDDDEVAL-----PGSDDIEQELITEDEAEEDSND--GDDMNNTEDDTLVSGD---EEEEKN 495
Cdd:COG5192  382 GLQLFSNSDAIDTVdrESSEIDNVGRktrrqPTGKAIAEETSREDELSFDDSDvsTSDENEDVDFTGKKGAinnEDESDN 461
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972  496 DSDEAETDWENEEDEGEASVEgSGNREKAKGKKRKLVDFDASLLAADTSLRALKRCAEAEREQTSFAERDGILSNEDFRK 575
Cdd:COG5192  462 EEVAFDSDSQFDESEGNLRWK-EGLASKLAYSQSGKRGRNIQKIFYDESLSPEECIEEYKGESAKSSESDLVVQDEPEDF 540
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972  576 IKeVKGKKDAKLALARKGLKVPDSDKLSKKLVNPAKLE-----AHIRQKLIKEERL--ELVKAGREDRGKYKSKTAIKQK 648
Cdd:COG5192  541 FD-VSKVANESISSNHEKLMESEFEELKKKWSSLAQLKsrfqkDATLDSIEGEEELiqDDEKGNFEDLEDEENSSDNEME 619
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 15235972  649 KTGGSS--NRQKEHKKNMPLAAVRSKAGKAKRVKKMK 683
Cdd:COG5192  620 ESRGSSvtAENEESADEVDYETEREENARKKEELRGN 656
COG5593 COG5593
Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal ...
443-534 7.53e-04

Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis];


Pssm-ID: 227880 [Multi-domain]  Cd Length: 821  Bit Score: 42.72  E-value: 7.53e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 443 ESDDDEVALPGSDDIEQELITEDEAEEDSNDGDDMNNTE----------DDTLVSGDEEEEKNDS--DEAETDWENE-ED 509
Cdd:COG5593 702 EDDSDDSELDFAEDDFSDSTSDDEPKLDAIDDEDAKSEGsqesdqeeglDEIFYSFDGEQDNSDSfaESSEEDESSEeEK 781
                        90       100
                ....*....|....*....|....*
gi 15235972 510 EGEASVEGSGNREKAKGKKRKLVDF 534
Cdd:COG5593 782 EEEENKEVSAKRAKKKQRKNMLKSL 806
Nop14 pfam04147
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the ...
439-530 1.18e-03

Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production.


Pssm-ID: 461196  Cd Length: 835  Bit Score: 42.22  E-value: 1.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   439 DLLQESDDDEVALPGSDDIEQELITE--DEAEEDSNDGDDMNNTEDDTLVS--GDEEEEKNDSDEAETDWENEEDEGE-A 513
Cdd:pfam04147 305 FVVDDDDDDEEFGLGKGIKERPTATElgDEDEDDFIIDDDLVESESDLELDeeEEDEEEEDDEDEDEEEEEDDDDLSDlE 384
                          90
                  ....*....|....*..
gi 15235972   514 SVEGSGNREKAKGKKRK 530
Cdd:pfam04147 385 SEEDEEDDEFEEEKKKK 401
DNA_pol_phi pfam04931
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ...
456-537 1.36e-03

DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.


Pssm-ID: 461488  Cd Length: 765  Bit Score: 41.84  E-value: 1.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   456 DIEQELITEDEAEEDSNDGDDMNNTEDDTLVSGDEEEEKNDSDEAEtDWENEEDEGEASVEGSGNREK---AKGKKRKLV 532
Cdd:pfam04931 624 DARENPEGQQELFEDEDEDEEDDDEEEDDDDEDDEDSEEDDDEDDD-DEDEEDDDDEDVDEIDELRAKlaeALGEHGDDA 702

                  ....*
gi 15235972   533 DFDAS 537
Cdd:pfam04931 703 DDDDS 707
COG5137 COG5137
Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics] ...
439-530 1.56e-03

Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics];


Pssm-ID: 227466 [Multi-domain]  Cd Length: 279  Bit Score: 41.13  E-value: 1.56e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 439 DLLQESDDDEVALPGSDDIEQELITEDEAEEDSNDGDDMNNTEDDTLVSGDEEEEKNDSDEAETDWENEEDEGEASVEGS 518
Cdd:COG5137 186 DGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVP 265
                        90
                ....*....|..
gi 15235972 519 GNREKAKGKKRK 530
Cdd:COG5137 266 RNNEESPAKKQK 277
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
467-680 2.09e-03

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 41.12  E-value: 2.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972  467 AEEDSNDGDDMNNTEDDTLvsgdEEEEKNDSDEAETDWENEEDEGEASVEGSGNREKAKGKKRKLvdfdASLLAADTSLR 546
Cdd:PRK07735  38 EEENREKEKALPKNDDMTI----EEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAA----AAAKAKAAALA 109
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972  547 ALKRCAEAEREQTSFAERDGILSNEDFRKIKEVKGKKDAKLALARKGLKVPDSDKLSKKLVNPAKLEAHIRQK------- 619
Cdd:PRK07735 110 KQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKqkaaeag 189
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15235972  620 ----LIKEERLELVKAGREDRGKYKSKTAIKQKKTGGSSNRQKEHKKNMPLAAVRSKAGKAKRVK 680
Cdd:PRK07735 190 egteEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAARAK 254
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
418-523 2.69e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 41.13  E-value: 2.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972    418 GPIARPKKYGEVNVFSNVPNVDLLQESDDDEVALPGSDdiEQELITEDEAE----------EDSNDGDDMNNTEDDtlvs 487
Cdd:TIGR00927  796 GAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETG--EQELNAENQGEakqdekgvdgGGGSDGGDSEEEEEE---- 869
                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 15235972    488 gDEEEEKNDSDEAETDWENEEDEGEASVEGSGNREK 523
Cdd:TIGR00927  870 -EEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQK 904
COG5406 COG5406
Nucleosome binding factor SPN, SPT16 subunit [Transcription, Replication, recombination and ...
441-522 3.87e-03

Nucleosome binding factor SPN, SPT16 subunit [Transcription, Replication, recombination and repair, Chromatin structure and dynamics];


Pssm-ID: 227693 [Multi-domain]  Cd Length: 1001  Bit Score: 40.77  E-value: 3.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972  441 LQESDDDEvalpgSDDIEQElITEDEAEED----SNDGDDMNNTEDDTLvSGDEEEEKNDSDEAETDWENEEDEGEASVE 516
Cdd:COG5406  923 LMVGSDDE-----SDESEEE-VSEYEASSDdesdETDEDEESDESSEDL-SEDESENDSSDEEDGEDWDELESKAAYDSR 995

                 ....*.
gi 15235972  517 GSGNRE 522
Cdd:COG5406  996 PGKRRK 1001
TFIIF_alpha pfam05793
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation ...
445-537 4.70e-03

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II.


Pssm-ID: 310411 [Multi-domain]  Cd Length: 528  Bit Score: 39.93  E-value: 4.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   445 DDDEVALPGSDDIEQElitedEAEED--SNDGDDMNNTEDDTLVSGDEEEEKNDSDEAETDWENEEDEGEASVEGSGNRE 522
Cdd:pfam05793 264 GDDDAFEYDSDDGDDE-----GREEDyiSDSSASGNDPEEREDKLSPEEPAKGEIEQSDDSEESEEEKNEEEGKLSKKGK 338
                          90
                  ....*....|....*
gi 15235972   523 KAKGKKRKLVDFDAS 537
Cdd:pfam05793 339 KAKKLKGKKNGKDKS 353
COG5137 COG5137
Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics] ...
442-526 4.86e-03

Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics];


Pssm-ID: 227466 [Multi-domain]  Cd Length: 279  Bit Score: 39.59  E-value: 4.86e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 442 QESDDDEVALPGSDDIEQELITEDEAEEDSNDGDDmnntEDDTLVSGDEEEEKNDSDEAETDweneeDEGEASVEGSGNR 521
Cdd:COG5137 162 EDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEV----GSDSYGEGNRELNEEEEEEAEGS-----DDGEDVVDYEGER 232

                ....*.
gi 15235972 522 -EKAKG 526
Cdd:COG5137 233 iDKKQG 238
PTZ00121 PTZ00121
MAEBL; Provisional
492-681 6.81e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.12  E-value: 6.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   492 EEKNDSDEAETDWENEEDEGEASVEGSGNREKAKGKKRKLVDFDASLLAADTSLRALKRCAEAEREQTSFAErdgilsne 571
Cdd:PTZ00121 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE-------- 1370
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972   572 dfRKIKEVKGKKDaklALARKGLKVPDSDKLSKKLVNPAKLEAHIRQKLIKEERLELVKAGREDRGKYKS--KTAIKQKK 649
Cdd:PTZ00121 1371 --KKKEEAKKKAD---AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEakKKAEEAKK 1445
                         170       180       190
                  ....*....|....*....|....*....|..
gi 15235972   650 TGGSSNRQKEHKKNMPLAAVRSKAGKAKRVKK 681
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKK 1477
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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