|
Name |
Accession |
Description |
Interval |
E-value |
| SDA1 |
pfam05285 |
SDA1; This family consists of several SDA1 protein homologs. SDA1 is a Saccharomyces ... |
365-696 |
2.48e-60 |
|
SDA1; This family consists of several SDA1 protein homologs. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localized in the nucleus.
Pssm-ID: 461611 [Multi-domain] Cd Length: 257 Bit Score: 203.22 E-value: 2.48e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 365 MTEDLLHDLAQYKTDKkyrthRKAISAASASLIALFREINPLLLVKKDRGRPGGPIAR---PKKYGEVNVFSNVPNVDLL 441
Cdd:pfam05285 1 MNEDLLQDLVEYKKSK-----DKGVMMAARSLISLYREVNPELLKKKDRGKPATMGLRerkPLKFGEEEVGDGIEGLELL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 442 QESDDDevalpgsddieqelitEDEAEEDSNDGDDMNNTEDdtlvsgdeeEEKNDSDEAETDWENEEDEGEASVEGSgnr 521
Cdd:pfam05285 76 EKWKEE----------------ERKRKREEEDEDDWEDWEV---------ESDDDSDDSEGGWIDVESDDEIEISDS--- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 522 ekakgkkrklvdfdaslLAADTslralkrcaeaereqtsfaerdgILSNEDFRKIKEVKGKKDAKlalarkglKVPDSDK 601
Cdd:pfam05285 128 -----------------LATTR-----------------------ILTPADFAKLQELRAEAAVK--------KALGSAK 159
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 602 LSKK--LVNPAKLEAHI-RQKLIKEERLELVKAGREDRGKYKSKTAIKQKKTGGSSNRQKEHKKNMPLAAVRSKAGKAKR 678
Cdd:pfam05285 160 RRKKdeLVTASDIEGPAkKRKQTKEERIASVKEGREDREKFGSKKAKKEAPGKSTTNKEKARKKNFMMTLHKAKGKKKRS 239
|
330
....*....|....*...
gi 15235972 679 VKKMKNSHSGSQFRGRKA 696
Cdd:pfam05285 240 LRDKQKVLRAHIERQKKG 257
|
|
| NUC130_3NT |
pfam08158 |
NUC130/3NT domain; This N terminal domain is found in a novel nucleolar protein family. |
2-51 |
6.04e-16 |
|
NUC130/3NT domain; This N terminal domain is found in a novel nucleolar protein family.
Pssm-ID: 462384 Cd Length: 50 Bit Score: 72.10 E-value: 6.04e-16
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15235972 2 FLAHVTPFYPNQLAAFPAQLTDLLRTSCLAMPSGLRYQVAQSLILLMNRK 51
Cdd:pfam08158 1 FLAQVAHCYPKETAEFPQELIDLLLNHHAVLDPDLREKLVQALILLRNKD 50
|
|
| CobT2 |
COG4547 |
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ... |
442-522 |
1.96e-04 |
|
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 443611 [Multi-domain] Cd Length: 608 Bit Score: 44.78 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 442 QESDDDEvalpgSDDIEQELITEDEAEEDSNDGDDMNNTEDDTLVSGDEEEEKNDSDEAETDWENEEDEGEASVEGSGNR 521
Cdd:COG4547 216 DEEDEDD-----EDDSGEQEEDEEDGEDEDEESDEGAEAEDAEASGDDAEEGESEAAEAESDEMAEEAEGEDSEEPGEPW 290
|
.
gi 15235972 522 E 522
Cdd:COG4547 291 R 291
|
|
| PRK07735 |
PRK07735 |
NADH-quinone oxidoreductase subunit C; |
467-680 |
2.09e-03 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 41.12 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 467 AEEDSNDGDDMNNTEDDTLvsgdEEEEKNDSDEAETDWENEEDEGEASVEGSGNREKAKGKKRKLvdfdASLLAADTSLR 546
Cdd:PRK07735 38 EEENREKEKALPKNDDMTI----EEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAA----AAAKAKAAALA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 547 ALKRCAEAEREQTSFAERDGILSNEDFRKIKEVKGKKDAKLALARKGLKVPDSDKLSKKLVNPAKLEAHIRQK------- 619
Cdd:PRK07735 110 KQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKqkaaeag 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15235972 620 ----LIKEERLELVKAGREDRGKYKSKTAIKQKKTGGSSNRQKEHKKNMPLAAVRSKAGKAKRVK 680
Cdd:PRK07735 190 egteEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAARAK 254
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
418-523 |
2.69e-03 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 41.13 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 418 GPIARPKKYGEVNVFSNVPNVDLLQESDDDEVALPGSDdiEQELITEDEAE----------EDSNDGDDMNNTEDDtlvs 487
Cdd:TIGR00927 796 GAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETG--EQELNAENQGEakqdekgvdgGGGSDGGDSEEEEEE---- 869
|
90 100 110
....*....|....*....|....*....|....*.
gi 15235972 488 gDEEEEKNDSDEAETDWENEEDEGEASVEGSGNREK 523
Cdd:TIGR00927 870 -EEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQK 904
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| SDA1 |
pfam05285 |
SDA1; This family consists of several SDA1 protein homologs. SDA1 is a Saccharomyces ... |
365-696 |
2.48e-60 |
|
SDA1; This family consists of several SDA1 protein homologs. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localized in the nucleus.
Pssm-ID: 461611 [Multi-domain] Cd Length: 257 Bit Score: 203.22 E-value: 2.48e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 365 MTEDLLHDLAQYKTDKkyrthRKAISAASASLIALFREINPLLLVKKDRGRPGGPIAR---PKKYGEVNVFSNVPNVDLL 441
Cdd:pfam05285 1 MNEDLLQDLVEYKKSK-----DKGVMMAARSLISLYREVNPELLKKKDRGKPATMGLRerkPLKFGEEEVGDGIEGLELL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 442 QESDDDevalpgsddieqelitEDEAEEDSNDGDDMNNTEDdtlvsgdeeEEKNDSDEAETDWENEEDEGEASVEGSgnr 521
Cdd:pfam05285 76 EKWKEE----------------ERKRKREEEDEDDWEDWEV---------ESDDDSDDSEGGWIDVESDDEIEISDS--- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 522 ekakgkkrklvdfdaslLAADTslralkrcaeaereqtsfaerdgILSNEDFRKIKEVKGKKDAKlalarkglKVPDSDK 601
Cdd:pfam05285 128 -----------------LATTR-----------------------ILTPADFAKLQELRAEAAVK--------KALGSAK 159
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 602 LSKK--LVNPAKLEAHI-RQKLIKEERLELVKAGREDRGKYKSKTAIKQKKTGGSSNRQKEHKKNMPLAAVRSKAGKAKR 678
Cdd:pfam05285 160 RRKKdeLVTASDIEGPAkKRKQTKEERIASVKEGREDREKFGSKKAKKEAPGKSTTNKEKARKKNFMMTLHKAKGKKKRS 239
|
330
....*....|....*...
gi 15235972 679 VKKMKNSHSGSQFRGRKA 696
Cdd:pfam05285 240 LRDKQKVLRAHIERQKKG 257
|
|
| NUC130_3NT |
pfam08158 |
NUC130/3NT domain; This N terminal domain is found in a novel nucleolar protein family. |
2-51 |
6.04e-16 |
|
NUC130/3NT domain; This N terminal domain is found in a novel nucleolar protein family.
Pssm-ID: 462384 Cd Length: 50 Bit Score: 72.10 E-value: 6.04e-16
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15235972 2 FLAHVTPFYPNQLAAFPAQLTDLLRTSCLAMPSGLRYQVAQSLILLMNRK 51
Cdd:pfam08158 1 FLAQVAHCYPKETAEFPQELIDLLLNHHAVLDPDLREKLVQALILLRNKD 50
|
|
| CobT2 |
COG4547 |
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ... |
442-522 |
1.96e-04 |
|
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 443611 [Multi-domain] Cd Length: 608 Bit Score: 44.78 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 442 QESDDDEvalpgSDDIEQELITEDEAEEDSNDGDDMNNTEDDTLVSGDEEEEKNDSDEAETDWENEEDEGEASVEGSGNR 521
Cdd:COG4547 216 DEEDEDD-----EDDSGEQEEDEEDGEDEDEESDEGAEAEDAEASGDDAEEGESEAAEAESDEMAEEAEGEDSEEPGEPW 290
|
.
gi 15235972 522 E 522
Cdd:COG4547 291 R 291
|
|
| COG5137 |
COG5137 |
Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics] ... |
436-525 |
2.94e-04 |
|
Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics];
Pssm-ID: 227466 [Multi-domain] Cd Length: 279 Bit Score: 43.45 E-value: 2.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 436 PNVDLLQESDDDEVALP-GSDDIEQELITEDEAEEDSNDGDDMNNTEDDT--LVSGDEEEEKNDSDEAETDWENEEDEGE 512
Cdd:COG5137 118 PGITKLEKSDVEEPSEKvDEEDVEREILAEKPRVTRFNIVWDNDEDNDEAppAQPDVDNEEEERLEESDGREEEEDEEVG 197
|
90
....*....|...
gi 15235972 513 ASVEGSGNREKAK 525
Cdd:COG5137 198 SDSYGEGNRELNE 210
|
|
| CobT2 |
COG4547 |
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ... |
456-518 |
3.06e-04 |
|
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 443611 [Multi-domain] Cd Length: 608 Bit Score: 44.01 E-value: 3.06e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15235972 456 DIEQELiTEDEAEEDSNDGDDMNNTEDDTLVSGDEEEEKNDSDEAETDWENEEDEGEASVEGS 518
Cdd:COG4547 206 DLAEEL-GEDEDEEDEDDEDDSGEQEEDEEDGEDEDEESDEGAEAEDAEASGDDAEEGESEAA 267
|
|
| BMS1 |
COG5192 |
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and ... |
428-683 |
3.52e-04 |
|
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227519 [Multi-domain] Cd Length: 1077 Bit Score: 43.96 E-value: 3.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 428 EVNVFSNVPNVDLL--QESDDDEVAL-----PGSDDIEQELITEDEAEEDSND--GDDMNNTEDDTLVSGD---EEEEKN 495
Cdd:COG5192 382 GLQLFSNSDAIDTVdrESSEIDNVGRktrrqPTGKAIAEETSREDELSFDDSDvsTSDENEDVDFTGKKGAinnEDESDN 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 496 DSDEAETDWENEEDEGEASVEgSGNREKAKGKKRKLVDFDASLLAADTSLRALKRCAEAEREQTSFAERDGILSNEDFRK 575
Cdd:COG5192 462 EEVAFDSDSQFDESEGNLRWK-EGLASKLAYSQSGKRGRNIQKIFYDESLSPEECIEEYKGESAKSSESDLVVQDEPEDF 540
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 576 IKeVKGKKDAKLALARKGLKVPDSDKLSKKLVNPAKLE-----AHIRQKLIKEERL--ELVKAGREDRGKYKSKTAIKQK 648
Cdd:COG5192 541 FD-VSKVANESISSNHEKLMESEFEELKKKWSSLAQLKsrfqkDATLDSIEGEEELiqDDEKGNFEDLEDEENSSDNEME 619
|
250 260 270
....*....|....*....|....*....|....*..
gi 15235972 649 KTGGSS--NRQKEHKKNMPLAAVRSKAGKAKRVKKMK 683
Cdd:COG5192 620 ESRGSSvtAENEESADEVDYETEREENARKKEELRGN 656
|
|
| COG5593 |
COG5593 |
Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal ... |
443-534 |
7.53e-04 |
|
Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227880 [Multi-domain] Cd Length: 821 Bit Score: 42.72 E-value: 7.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 443 ESDDDEVALPGSDDIEQELITEDEAEEDSNDGDDMNNTE----------DDTLVSGDEEEEKNDS--DEAETDWENE-ED 509
Cdd:COG5593 702 EDDSDDSELDFAEDDFSDSTSDDEPKLDAIDDEDAKSEGsqesdqeeglDEIFYSFDGEQDNSDSfaESSEEDESSEeEK 781
|
90 100
....*....|....*....|....*
gi 15235972 510 EGEASVEGSGNREKAKGKKRKLVDF 534
Cdd:COG5593 782 EEEENKEVSAKRAKKKQRKNMLKSL 806
|
|
| Nop14 |
pfam04147 |
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the ... |
439-530 |
1.18e-03 |
|
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production.
Pssm-ID: 461196 Cd Length: 835 Bit Score: 42.22 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 439 DLLQESDDDEVALPGSDDIEQELITE--DEAEEDSNDGDDMNNTEDDTLVS--GDEEEEKNDSDEAETDWENEEDEGE-A 513
Cdd:pfam04147 305 FVVDDDDDDEEFGLGKGIKERPTATElgDEDEDDFIIDDDLVESESDLELDeeEEDEEEEDDEDEDEEEEEDDDDLSDlE 384
|
90
....*....|....*..
gi 15235972 514 SVEGSGNREKAKGKKRK 530
Cdd:pfam04147 385 SEEDEEDDEFEEEKKKK 401
|
|
| DNA_pol_phi |
pfam04931 |
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ... |
456-537 |
1.36e-03 |
|
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.
Pssm-ID: 461488 Cd Length: 765 Bit Score: 41.84 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 456 DIEQELITEDEAEEDSNDGDDMNNTEDDTLVSGDEEEEKNDSDEAEtDWENEEDEGEASVEGSGNREK---AKGKKRKLV 532
Cdd:pfam04931 624 DARENPEGQQELFEDEDEDEEDDDEEEDDDDEDDEDSEEDDDEDDD-DEDEEDDDDEDVDEIDELRAKlaeALGEHGDDA 702
|
....*
gi 15235972 533 DFDAS 537
Cdd:pfam04931 703 DDDDS 707
|
|
| COG5137 |
COG5137 |
Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics] ... |
439-530 |
1.56e-03 |
|
Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics];
Pssm-ID: 227466 [Multi-domain] Cd Length: 279 Bit Score: 41.13 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 439 DLLQESDDDEVALPGSDDIEQELITEDEAEEDSNDGDDMNNTEDDTLVSGDEEEEKNDSDEAETDWENEEDEGEASVEGS 518
Cdd:COG5137 186 DGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVP 265
|
90
....*....|..
gi 15235972 519 GNREKAKGKKRK 530
Cdd:COG5137 266 RNNEESPAKKQK 277
|
|
| PRK07735 |
PRK07735 |
NADH-quinone oxidoreductase subunit C; |
467-680 |
2.09e-03 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 41.12 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 467 AEEDSNDGDDMNNTEDDTLvsgdEEEEKNDSDEAETDWENEEDEGEASVEGSGNREKAKGKKRKLvdfdASLLAADTSLR 546
Cdd:PRK07735 38 EEENREKEKALPKNDDMTI----EEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAA----AAAKAKAAALA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 547 ALKRCAEAEREQTSFAERDGILSNEDFRKIKEVKGKKDAKLALARKGLKVPDSDKLSKKLVNPAKLEAHIRQK------- 619
Cdd:PRK07735 110 KQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKqkaaeag 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15235972 620 ----LIKEERLELVKAGREDRGKYKSKTAIKQKKTGGSSNRQKEHKKNMPLAAVRSKAGKAKRVK 680
Cdd:PRK07735 190 egteEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAARAK 254
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
418-523 |
2.69e-03 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 41.13 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 418 GPIARPKKYGEVNVFSNVPNVDLLQESDDDEVALPGSDdiEQELITEDEAE----------EDSNDGDDMNNTEDDtlvs 487
Cdd:TIGR00927 796 GAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETG--EQELNAENQGEakqdekgvdgGGGSDGGDSEEEEEE---- 869
|
90 100 110
....*....|....*....|....*....|....*.
gi 15235972 488 gDEEEEKNDSDEAETDWENEEDEGEASVEGSGNREK 523
Cdd:TIGR00927 870 -EEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQK 904
|
|
| COG5406 |
COG5406 |
Nucleosome binding factor SPN, SPT16 subunit [Transcription, Replication, recombination and ... |
441-522 |
3.87e-03 |
|
Nucleosome binding factor SPN, SPT16 subunit [Transcription, Replication, recombination and repair, Chromatin structure and dynamics];
Pssm-ID: 227693 [Multi-domain] Cd Length: 1001 Bit Score: 40.77 E-value: 3.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 441 LQESDDDEvalpgSDDIEQElITEDEAEED----SNDGDDMNNTEDDTLvSGDEEEEKNDSDEAETDWENEEDEGEASVE 516
Cdd:COG5406 923 LMVGSDDE-----SDESEEE-VSEYEASSDdesdETDEDEESDESSEDL-SEDESENDSSDEEDGEDWDELESKAAYDSR 995
|
....*.
gi 15235972 517 GSGNRE 522
Cdd:COG5406 996 PGKRRK 1001
|
|
| TFIIF_alpha |
pfam05793 |
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation ... |
445-537 |
4.70e-03 |
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II.
Pssm-ID: 310411 [Multi-domain] Cd Length: 528 Bit Score: 39.93 E-value: 4.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 445 DDDEVALPGSDDIEQElitedEAEED--SNDGDDMNNTEDDTLVSGDEEEEKNDSDEAETDWENEEDEGEASVEGSGNRE 522
Cdd:pfam05793 264 GDDDAFEYDSDDGDDE-----GREEDyiSDSSASGNDPEEREDKLSPEEPAKGEIEQSDDSEESEEEKNEEEGKLSKKGK 338
|
90
....*....|....*
gi 15235972 523 KAKGKKRKLVDFDAS 537
Cdd:pfam05793 339 KAKKLKGKKNGKDKS 353
|
|
| COG5137 |
COG5137 |
Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics] ... |
442-526 |
4.86e-03 |
|
Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics];
Pssm-ID: 227466 [Multi-domain] Cd Length: 279 Bit Score: 39.59 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 442 QESDDDEVALPGSDDIEQELITEDEAEEDSNDGDDmnntEDDTLVSGDEEEEKNDSDEAETDweneeDEGEASVEGSGNR 521
Cdd:COG5137 162 EDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEV----GSDSYGEGNRELNEEEEEEAEGS-----DDGEDVVDYEGER 232
|
....*.
gi 15235972 522 -EKAKG 526
Cdd:COG5137 233 iDKKQG 238
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
492-681 |
6.81e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 6.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 492 EEKNDSDEAETDWENEEDEGEASVEGSGNREKAKGKKRKLVDFDASLLAADTSLRALKRCAEAEREQTSFAErdgilsne 571
Cdd:PTZ00121 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE-------- 1370
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90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235972 572 dfRKIKEVKGKKDaklALARKGLKVPDSDKLSKKLVNPAKLEAHIRQKLIKEERLELVKAGREDRGKYKS--KTAIKQKK 649
Cdd:PTZ00121 1371 --KKKEEAKKKAD---AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEakKKAEEAKK 1445
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170 180 190
....*....|....*....|....*....|..
gi 15235972 650 TGGSSNRQKEHKKNMPLAAVRSKAGKAKRVKK 681
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKK 1477
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