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Conserved domains on  [gi|145355100|ref|NP_195492|]
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myb domain protein 87 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 1000535)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein may be involved in the regulation of gene expression

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03212 super family cl31985
Transcription repressor MYB5; Provisional
 5-122 2.05e-51

Transcription repressor MYB5; Provisional


The actual alignment was detected with superfamily member PLN03212:

Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 169.87  E-value: 2.05e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145355100   5 PCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNnWISLPQRIGIKRCGKSCRLRWLNYLRPNLKHGGFTDEEDYIICSLYI 84
Cdd:PLN03212  16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGR-WRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHR 94

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 145355100  85 TIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKLLsKQG 122
Cdd:PLN03212  95 LLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLL-RQG 131
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 5-122 2.05e-51

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 169.87  E-value: 2.05e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145355100   5 PCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNnWISLPQRIGIKRCGKSCRLRWLNYLRPNLKHGGFTDEEDYIICSLYI 84
Cdd:PLN03212  16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGR-WRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHR 94

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 145355100  85 TIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKLLsKQG 122
Cdd:PLN03212  95 LLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLL-RQG 131
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 12-110 4.74e-16

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 78.29  E-value: 4.74e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145355100  12 VKKGPWSTEEDAVLKSYIEKHGTgNNWISLPQRIgIKRCGKSCRLRWLNYLRPNLKHGGFTDEEDYIICSLYITIGSRWS 91
Cdd:COG5147   18 RKGGSWKRTEDEDLKALVKKLGP-NNWSKVASLL-ISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWS 95

                         90
                 ....*....|....*....
gi 145355100  92 IIASQLPGRTDNDIKNYWN 110
Cdd:COG5147   96 TIADYKDRRTAQQCVERYV 114
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-62 6.54e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 59.44  E-value: 6.54e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 145355100   14 KGPWSTEEDAVLKSYIEKHgtGNNWISLPQRIGiKRCGKSCRLRWLNYL 62
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKL--GNRWKKIAKLLP-GRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-64 6.17e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 51.07  E-value: 6.17e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 145355100    14 KGPWSTEEDAVLKSYIEKHGTgNNWISLPQRIGiKRCGKSCRLRWLNYLRP 64
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGK-NNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 16-62 2.54e-08

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 49.11  E-value: 2.54e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 145355100  16 PWSTEEDAVLKSYIEKHGTgNNWISLPQRIGiKRCGKSCRLRWLNYL 62
Cdd:cd00167    1 PWTEEEDELLLEAVKKYGK-NNWEKIAKELP-GRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 5-122 2.05e-51

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 169.87  E-value: 2.05e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145355100   5 PCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNnWISLPQRIGIKRCGKSCRLRWLNYLRPNLKHGGFTDEEDYIICSLYI 84
Cdd:PLN03212  16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGR-WRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHR 94

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 145355100  85 TIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKLLsKQG 122
Cdd:PLN03212  95 LLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLL-RQG 131
PLN03091 PLN03091
hypothetical protein; Provisional
 1-117 1.06e-48

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 168.62  E-value: 1.06e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145355100   1 MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNnWISLPQRIGIKRCGKSCRLRWLNYLRPNLKHGGFTDEEDYIIC 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGC-WSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 145355100  81 SLYITIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKL 117
Cdd:PLN03091  80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 12-110 4.74e-16

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 78.29  E-value: 4.74e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145355100  12 VKKGPWSTEEDAVLKSYIEKHGTgNNWISLPQRIgIKRCGKSCRLRWLNYLRPNLKHGGFTDEEDYIICSLYITIGSRWS 91
Cdd:COG5147   18 RKGGSWKRTEDEDLKALVKKLGP-NNWSKVASLL-ISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWS 95

                         90
                 ....*....|....*....
gi 145355100  92 IIASQLPGRTDNDIKNYWN 110
Cdd:COG5147   96 TIADYKDRRTAQQCVERYV 114
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-62 6.54e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 59.44  E-value: 6.54e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 145355100   14 KGPWSTEEDAVLKSYIEKHgtGNNWISLPQRIGiKRCGKSCRLRWLNYL 62
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKL--GNRWKKIAKLLP-GRTDNQCKNRWQNYL 46
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 68-113 2.38e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 57.90  E-value: 2.38e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 145355100   68 HGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNTRL 113
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 17-76 1.54e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 53.08  E-value: 1.54e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 145355100   17 WSTEEDAVLKSYIEKHGtgNNWISLPQRIGiKRCGKSCRLRWLNYLRPNLKHGGFTDEED 76
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG--NDWKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEED 57
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-64 6.17e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 51.07  E-value: 6.17e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 145355100    14 KGPWSTEEDAVLKSYIEKHGTgNNWISLPQRIGiKRCGKSCRLRWLNYLRP 64
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGK-NNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 16-62 2.54e-08

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 49.11  E-value: 2.54e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 145355100  16 PWSTEEDAVLKSYIEKHGTgNNWISLPQRIGiKRCGKSCRLRWLNYL 62
Cdd:cd00167    1 PWTEEEDELLLEAVKKYGK-NNWEKIAKELP-GRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
71-115 4.87e-07

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 45.68  E-value: 4.87e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 145355100    71 FTDEEDYIICSLYITIGS-RWSIIASQLPGRTDNDIKNYWNTRLKK 115
Cdd:smart00717   4 WTEEEDELLIELVKKYGKnNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-113 7.11e-07

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 45.26  E-value: 7.11e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 145355100  71 FTDEEDYIICSLYITIGS-RWSIIASQLPGRTDNDIKNYWNTRL 113
Cdd:cd00167    2 WTEEEDELLLEAVKKYGKnNWEKIAKELPGRTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 71-117 6.81e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 42.68  E-value: 6.81e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 145355100   71 FTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKL 117
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKI 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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