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Conserved domains on  [gi|240256249|ref|NP_195786|]
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influenza virus NS1A-binding protein [Arabidopsis thaliana]

Protein Classification

kelch repeat and DCD domain-containing protein( domain architecture ID 13770111)

kelch repeat and DCD (development and cell death) domain-containing protein similar to Arabidopsis thaliana influenza virus NS1A-binding protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Dev_Cell_Death pfam10539
Development and cell death domain; The DCD domain is found in plant proteins involved in ...
 19-146 1.28e-73

Development and cell death domain; The DCD domain is found in plant proteins involved in development and cell death. The DCD domain is an approximately 130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N-terminus and a PAQV and a PLxE motif towards the C-terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognisable motifs, like the KELCH repeats or the ParB domain.


:

Pssm-ID: 463141  Cd Length: 126  Bit Score: 232.41  E-value: 1.28e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249   19 GGVVFGCTKNTIKECMSKQLFGLPSNHYPYVQKIDIGLPLFLFNYSDRTLHGIFEAAGCGQLNFDPYGWTSDGserTSYP 98
Cdd:pfam10539   1 GGVIFMCNGKTKPECFRYQLFGLPAGHKDFVKKIKPGLPLFLFDYDLRLLYGIFEAASDGGMNIEPYAFTSSG---GPFP 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 240256249   99 AQVPISVRLQCEPLSEEKFKPAIADNYYSSHHFWFELDHFQTRKLTCL 146
Cdd:pfam10539  78 AQVRFKIRKDCLPLPESEFKPAIKDNYYTKNKFRFELSHAQVRKLLSL 125
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
410-648 2.47e-45

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 162.63  E-value: 2.47e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 410 RSNASVAKLDGKIYVFGGDDGGRGwTNSAESFNQTDGQWSLCPPLN-ERKGSLGGATLDGKIFAIGGGNGM----VSFSD 484
Cdd:COG3055   13 RSEAAAALLDGKVYVAGGLSGGSA-SNSFEVYDPATNTWSELAPLPgPPRHHAAAVAQDGKLYVFGGFTGAnpssTPLND 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 485 VEMLDPDIGRWIRTRSMGQERFAVASVEHKSSIYAVGGYDGKEYLNTAERFDPREHSWMNIASMKSRRGCHSLVVLNE-K 563
Cdd:COG3055   92 VYVYDPATNTWTKLAPMPTPRGGATALLLDGKIYVVGGWDDGGNVAWVEVYDPATGTWTQLAPLPTPRDHLAAAVLPDgK 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 564 LYAIGGFDGETmvssveiyepRTGTWMTGEPMKDLRGYSAVAVVKDSIYVIGGYKGeeddILDTVECFKEGEG-WKNVPS 642
Cdd:COG3055  172 ILVIGGRNGSG----------FSNTWTTLAPLPTARAGHAAAVLGGKILVFGGESG----FSDEVEAYDPATNtWTALGE 237


                 ....*.
gi 240256249 643 SSIGRR 648
Cdd:COG3055  238 LPTPRH 243
 
Name Accession Description Interval E-value
Dev_Cell_Death pfam10539
Development and cell death domain; The DCD domain is found in plant proteins involved in ...
 19-146 1.28e-73

Development and cell death domain; The DCD domain is found in plant proteins involved in development and cell death. The DCD domain is an approximately 130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N-terminus and a PAQV and a PLxE motif towards the C-terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognisable motifs, like the KELCH repeats or the ParB domain.


Pssm-ID: 463141  Cd Length: 126  Bit Score: 232.41  E-value: 1.28e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249   19 GGVVFGCTKNTIKECMSKQLFGLPSNHYPYVQKIDIGLPLFLFNYSDRTLHGIFEAAGCGQLNFDPYGWTSDGserTSYP 98
Cdd:pfam10539   1 GGVIFMCNGKTKPECFRYQLFGLPAGHKDFVKKIKPGLPLFLFDYDLRLLYGIFEAASDGGMNIEPYAFTSSG---GPFP 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 240256249   99 AQVPISVRLQCEPLSEEKFKPAIADNYYSSHHFWFELDHFQTRKLTCL 146
Cdd:pfam10539  78 AQVRFKIRKDCLPLPESEFKPAIKDNYYTKNKFRFELSHAQVRKLLSL 125
DCD smart00767
DCD is a plant specific domain in proteins involved in development and programmed cell death; ...
 16-149 6.04e-58

DCD is a plant specific domain in proteins involved in development and programmed cell death; The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.


Pssm-ID: 214811  Cd Length: 132  Bit Score: 191.33  E-value: 6.04e-58
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249    16 SQLGGVVFGCTKNTIKECMSKQLFGLPSNHYPYVQKIDIGLPLFLFNYSDRTLHGIFEAAGCGQLNFDPYGWTSDGseRT 95
Cdd:smart00767   1 ETLGGYIFMCNNDTKEECFRRQLFGLPRGYRDFVRNIKPGLPLFLYNYDTRKLHGIFEATSFGGLNIDPNAFEGKK--ES 78

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 240256249    96 SYPAQVPISVRLQCEPLSEEKFKPAIADNYYSSHHFWFELDHFQTRKLTCLLTS 149
Cdd:smart00767  79 RFPAQVRFRIRKDCKPLPESEFRSAILENYDGPSKFRFELSHAQVLRLLDLFAP 132
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
410-648 2.47e-45

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 162.63  E-value: 2.47e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 410 RSNASVAKLDGKIYVFGGDDGGRGwTNSAESFNQTDGQWSLCPPLN-ERKGSLGGATLDGKIFAIGGGNGM----VSFSD 484
Cdd:COG3055   13 RSEAAAALLDGKVYVAGGLSGGSA-SNSFEVYDPATNTWSELAPLPgPPRHHAAAVAQDGKLYVFGGFTGAnpssTPLND 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 485 VEMLDPDIGRWIRTRSMGQERFAVASVEHKSSIYAVGGYDGKEYLNTAERFDPREHSWMNIASMKSRRGCHSLVVLNE-K 563
Cdd:COG3055   92 VYVYDPATNTWTKLAPMPTPRGGATALLLDGKIYVVGGWDDGGNVAWVEVYDPATGTWTQLAPLPTPRDHLAAAVLPDgK 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 564 LYAIGGFDGETmvssveiyepRTGTWMTGEPMKDLRGYSAVAVVKDSIYVIGGYKGeeddILDTVECFKEGEG-WKNVPS 642
Cdd:COG3055  172 ILVIGGRNGSG----------FSNTWTTLAPLPTARAGHAAAVLGGKILVFGGESG----FSDEVEAYDPATNtWTALGE 237


                 ....*.
gi 240256249 643 SSIGRR 648
Cdd:COG3055  238 LPTPRH 243
PHA03098 PHA03098
kelch-like protein; Provisional
 370-589 1.30e-30

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 126.42  E-value: 1.30e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 370 TEAILLLGGFDKDSETwLSSVQSYFPSRNVVKAHSSMSCIRSNASVAKLDGKIYVFGGDDGGrGWTNSAESFNQTDGQWS 449
Cdd:PHA03098 294 NNVIYFIGGMNKNNLS-VNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWR 371

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 450 LCPPLNERKGSLGGATLDGKIFAIGGGN-GMVSFSDVEMLDPDIGRWIRTRSMGQERFAVASVEHKSSIYAVGGY---DG 525
Cdd:PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISkNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGIsyiDN 451

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 240256249 526 KEYLNTAERFDPREHSWMNIASMKSRRGCHSLVVLNEKLYAIGGFDGETMVSSVEIYEPRTGTW 589
Cdd:PHA03098 452 IKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515
Kelch smart00612
Kelch domain;
517-562 3.27e-12

Kelch domain;


Pssm-ID: 128874 [Multi-domain]  Cd Length: 47  Bit Score: 61.42  E-value: 3.27e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 240256249   517 IYAVGGYDGKEYLNTAERFDPREHSWMNIASMKSRRGCHSLVVLNE 562
Cdd:smart00612   2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 551-596 5.48e-12

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 60.70  E-value: 5.48e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 240256249  551 RRGCHSLVVLNEKLYAIGGFDGETMVSSVEIYEPRTGTWMTGEPMK 596
Cdd:pfam01344   1 RRSGAGVVVVGGKIYVIGGFDGNQSLNSVEVYDPETNTWSKLPSMP 46
 
Name Accession Description Interval E-value
Dev_Cell_Death pfam10539
Development and cell death domain; The DCD domain is found in plant proteins involved in ...
 19-146 1.28e-73

Development and cell death domain; The DCD domain is found in plant proteins involved in development and cell death. The DCD domain is an approximately 130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N-terminus and a PAQV and a PLxE motif towards the C-terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognisable motifs, like the KELCH repeats or the ParB domain.


Pssm-ID: 463141  Cd Length: 126  Bit Score: 232.41  E-value: 1.28e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249   19 GGVVFGCTKNTIKECMSKQLFGLPSNHYPYVQKIDIGLPLFLFNYSDRTLHGIFEAAGCGQLNFDPYGWTSDGserTSYP 98
Cdd:pfam10539   1 GGVIFMCNGKTKPECFRYQLFGLPAGHKDFVKKIKPGLPLFLFDYDLRLLYGIFEAASDGGMNIEPYAFTSSG---GPFP 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 240256249   99 AQVPISVRLQCEPLSEEKFKPAIADNYYSSHHFWFELDHFQTRKLTCL 146
Cdd:pfam10539  78 AQVRFKIRKDCLPLPESEFKPAIKDNYYTKNKFRFELSHAQVRKLLSL 125
DCD smart00767
DCD is a plant specific domain in proteins involved in development and programmed cell death; ...
 16-149 6.04e-58

DCD is a plant specific domain in proteins involved in development and programmed cell death; The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.


Pssm-ID: 214811  Cd Length: 132  Bit Score: 191.33  E-value: 6.04e-58
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249    16 SQLGGVVFGCTKNTIKECMSKQLFGLPSNHYPYVQKIDIGLPLFLFNYSDRTLHGIFEAAGCGQLNFDPYGWTSDGseRT 95
Cdd:smart00767   1 ETLGGYIFMCNNDTKEECFRRQLFGLPRGYRDFVRNIKPGLPLFLYNYDTRKLHGIFEATSFGGLNIDPNAFEGKK--ES 78

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 240256249    96 SYPAQVPISVRLQCEPLSEEKFKPAIADNYYSSHHFWFELDHFQTRKLTCLLTS 149
Cdd:smart00767  79 RFPAQVRFRIRKDCKPLPESEFRSAILENYDGPSKFRFELSHAQVLRLLDLFAP 132
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
410-648 2.47e-45

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 162.63  E-value: 2.47e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 410 RSNASVAKLDGKIYVFGGDDGGRGwTNSAESFNQTDGQWSLCPPLN-ERKGSLGGATLDGKIFAIGGGNGM----VSFSD 484
Cdd:COG3055   13 RSEAAAALLDGKVYVAGGLSGGSA-SNSFEVYDPATNTWSELAPLPgPPRHHAAAVAQDGKLYVFGGFTGAnpssTPLND 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 485 VEMLDPDIGRWIRTRSMGQERFAVASVEHKSSIYAVGGYDGKEYLNTAERFDPREHSWMNIASMKSRRGCHSLVVLNE-K 563
Cdd:COG3055   92 VYVYDPATNTWTKLAPMPTPRGGATALLLDGKIYVVGGWDDGGNVAWVEVYDPATGTWTQLAPLPTPRDHLAAAVLPDgK 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 564 LYAIGGFDGETmvssveiyepRTGTWMTGEPMKDLRGYSAVAVVKDSIYVIGGYKGeeddILDTVECFKEGEG-WKNVPS 642
Cdd:COG3055  172 ILVIGGRNGSG----------FSNTWTTLAPLPTARAGHAAAVLGGKILVFGGESG----FSDEVEAYDPATNtWTALGE 237


                 ....*.
gi 240256249 643 SSIGRR 648
Cdd:COG3055  238 LPTPRH 243
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
373-616 2.72e-38

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 142.99  E-value: 2.72e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 373 ILLLGGFDKDSETwlSSVQSYFPSRNVVKAHSSMS-CIRSNASVAKLDGKIYVFGG---DDGGRGWTNSAESFNQTDGQW 448
Cdd:COG3055   25 VYVAGGLSGGSAS--NSFEVYDPATNTWSELAPLPgPPRHHAAAVAQDGKLYVFGGftgANPSSTPLNDVYVYDPATNTW 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 449 SLCPPLNERKGSLGGATLDGKIFAIGGGNGMVSFSDVEMLDPDIGRWIRTRSMGQERFAVASVEHKSS-IYAVGGYDGKE 527
Cdd:COG3055  103 TKLAPMPTPRGGATALLLDGKIYVVGGWDDGGNVAWVEVYDPATGTWTQLAPLPTPRDHLAAAVLPDGkILVIGGRNGSG 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 528 YLNTaerfdprehsWMNIASMKSRRGCHSLVVLNEKLYAIGGFDGETmvSSVEIYEPRTGTWMTGEPMKDLRGYSAVAVV 607
Cdd:COG3055  183 FSNT----------WTTLAPLPTARAGHAAAVLGGKILVFGGESGFS--DEVEAYDPATNTWTALGELPTPRHGHAAVLT 250


                 ....*....
gi 240256249 608 KDSIYVIGG 616
Cdd:COG3055  251 DGKVYVIGG 259
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
446-620 1.20e-37

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 141.45  E-value: 1.20e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 446 GQWSLCPPLNERKGSLGGATLDGKIFAIGGGNGMVSFSDVEMLDPDIGRWIRTRSM-GQERFAVASVEHKSSIYAVGGYD 524
Cdd:COG3055    1 ATWSSLPDLPTPRSEAAAALLDGKVYVAGGLSGGSASNSFEVYDPATNTWSELAPLpGPPRHHAAAVAQDGKLYVFGGFT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 525 GK----EYLNTAERFDPREHSWMNIASMKSRRGCHSLVVLNEKLYAIGGFDGETMVSSVEIYEPRTGTWMTGEPMKDLR- 599
Cdd:COG3055   81 GAnpssTPLNDVYVYDPATNTWTKLAPMPTPRGGATALLLDGKIYVVGGWDDGGNVAWVEVYDPATGTWTQLAPLPTPRd 160

                        170       180
                 ....*....|....*....|.
gi 240256249 600 GYSAVAVVKDSIYVIGGYKGE 620
Cdd:COG3055  161 HLAAAVLPDGKILVIGGRNGS 181
PHA03098 PHA03098
kelch-like protein; Provisional
 370-589 1.30e-30

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 126.42  E-value: 1.30e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 370 TEAILLLGGFDKDSETwLSSVQSYFPSRNVVKAHSSMSCIRSNASVAKLDGKIYVFGGDDGGrGWTNSAESFNQTDGQWS 449
Cdd:PHA03098 294 NNVIYFIGGMNKNNLS-VNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWR 371

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 450 LCPPLNERKGSLGGATLDGKIFAIGGGN-GMVSFSDVEMLDPDIGRWIRTRSMGQERFAVASVEHKSSIYAVGGY---DG 525
Cdd:PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISkNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGIsyiDN 451

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 240256249 526 KEYLNTAERFDPREHSWMNIASMKSRRGCHSLVVLNEKLYAIGGFDGETMVSSVEIYEPRTGTW 589
Cdd:PHA03098 452 IKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515
PHA03098 PHA03098
kelch-like protein; Provisional
 418-646 1.41e-29

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 123.34  E-value: 1.41e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 418 LDGKIYVFGGDDGGRGWTNSAESFNQTDGQWSLCPPLNERKGSLGGATLDGKIFAIGGGNGMVSFSDVEMLDPDIGRWIR 497
Cdd:PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 498 TRSMGQERFAVASVEHKSSIYAVGG-YDGKEYLNTAERFDPREHSWMNIASMKSRRGCHSLVVLNEKLYAIGGF---DGE 573
Cdd:PHA03098 373 EPPLIFPRYNPCVVNVNNLIYVIGGiSKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGIsyiDNI 452

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 240256249 574 TMVSSVEIYEPRTGTWMTGEPMKDLRGYSAVAVVKDSIYVIGGYKGEED-DILDTVECFKEGEGWKNVPSSSIG 646
Cdd:PHA03098 453 KVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYiNEIEVYDDKTNTWTLFCKFPKVIG 526
PHA03098 PHA03098
kelch-like protein; Provisional
 505-645 1.01e-16

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 83.66  E-value: 1.01e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 505 RFAVASVEHKSSIYAVGGYDGKEY-LNTAERFDPREHSWMNIASMKSRRGCHSLVVLNEKLYAIGGFDGETMVSSVEIYE 583
Cdd:PHA03098 285 VYCFGSVVLNNVIYFIGGMNKNNLsVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWK 364

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 240256249 584 PRTGTWMTGEPMKDLRGYSAVAVVKDSIYVIGGYKgEEDDILDTVECF-KEGEGWKNVPSSSI 645
Cdd:PHA03098 365 PGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGIS-KNDELLKTVECFsLNTNKWSKGSPLPI 426
Kelch smart00612
Kelch domain;
517-562 3.27e-12

Kelch domain;


Pssm-ID: 128874 [Multi-domain]  Cd Length: 47  Bit Score: 61.42  E-value: 3.27e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 240256249   517 IYAVGGYDGKEYLNTAERFDPREHSWMNIASMKSRRGCHSLVVLNE 562
Cdd:smart00612   2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 551-596 5.48e-12

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 60.70  E-value: 5.48e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 240256249  551 RRGCHSLVVLNEKLYAIGGFDGETMVSSVEIYEPRTGTWMTGEPMK 596
Cdd:pfam01344   1 RRSGAGVVVVGGKIYVIGGFDGNQSLNSVEVYDPETNTWSKLPSMP 46
Kelch smart00612
Kelch domain;
563-609 1.86e-11

Kelch domain;


Pssm-ID: 128874 [Multi-domain]  Cd Length: 47  Bit Score: 59.11  E-value: 1.86e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 240256249   563 KLYAIGGFDGETMVSSVEIYEPRTGTWMTGEPMKDLRGYSAVAVVKD 609
Cdd:smart00612   1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 505-549 9.61e-11

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 57.24  E-value: 9.61e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 240256249  505 RFAVASVEHKssIYAVGGYDGKEYLNTAERFDPREHSWMNIASMK 549
Cdd:pfam01344   4 GAGVVVVGGK--IYVIGGFDGNQSLNSVEVYDPETNTWSKLPSMP 46
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
373-489 1.91e-09

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 59.01  E-value: 1.91e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 373 ILLLGGFDkdSETWLSSVQSYFPSRNVVKAHSSMSCIRSNASVAKL-DGKIYVFGGDDGG-------------------- 431
Cdd:COG3055  124 IYVVGGWD--DGGNVAWVEVYDPATGTWTQLAPLPTPRDHLAAAVLpDGKILVIGGRNGSgfsntwttlaplptaragha 201

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240256249 432 --------------RGWTNSAESFNQTDGQWSLCPPLNERKGSLGGATLDGKIFAIGG----GNGMVSFSDVEMLD 489
Cdd:COG3055  202 aavlggkilvfggeSGFSDEVEAYDPATNTWTALGELPTPRHGHAAVLTDGKVYVIGGetkpGVRTPLVTSAEVYD 277
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 410-455 5.91e-09

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 52.23  E-value: 5.91e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 240256249  410 RSNASVAKLDGKIYVFGGDDGGRgWTNSAESFNQTDGQWSLCPPLN 455
Cdd:pfam01344   2 RSGAGVVVVGGKIYVIGGFDGNQ-SLNSVEVYDPETNTWSKLPSMP 46
Kelch smart00612
Kelch domain;
469-513 4.00e-07

Kelch domain;


Pssm-ID: 128874 [Multi-domain]  Cd Length: 47  Bit Score: 46.78  E-value: 4.00e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 240256249   469 KIFAIGGGNGMVSFSDVEMLDPDIGRWIRTRSMGQERFAVASVEH 513
Cdd:smart00612   1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVI 45
Kelch smart00612
Kelch domain;
421-468 5.75e-07

Kelch domain;


Pssm-ID: 128874 [Multi-domain]  Cd Length: 47  Bit Score: 46.40  E-value: 5.75e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 240256249   421 KIYVFGGDDGGRgWTNSAESFNQTDGQWSLCPPLNERKGSLGGATLDG 468
Cdd:smart00612   1 KIYVVGGFDGGQ-RLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 462-502 7.70e-07

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 46.07  E-value: 7.70e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 240256249  462 GGATLDGKIFAIGGGNGMVSFSDVEMLDPDIGRWIRTRSMG 502
Cdd:pfam01344   6 GVVVVGGKIYVIGGFDGNQSLNSVEVYDPETNTWSKLPSMP 46
PHA02790 PHA02790
Kelch-like protein; Provisional
 517-651 1.65e-06

Kelch-like protein; Provisional


Pssm-ID: 165153 [Multi-domain]  Cd Length: 480  Bit Score: 51.20  E-value: 1.65e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 517 IYAVGGYDGKEYLNTAERFDPREHSWMNIASMKSRRGCHSLVVLNEKLYAIGGFDGETmvsSVEIYEPRTGTWMTGEPMK 596
Cdd:PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPT---SVERWFHGDAAWVNMPSLL 350

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 240256249 597 DLRGYSAVAVVKDSIYVIGGYKgEEDDILDTVecFKEGEGWKNVPSS----------SIGRRCFL 651
Cdd:PHA02790 351 KPRCNPAVASINNVIYVIGGHS-ETDTTTEYL--LPNHDQWQFGPSTyyphykscalVFGRRLFL 412
PLN02193 PLN02193
nitrile-specifier protein
 379-616 3.22e-06

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 49.95  E-value: 3.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 379 FDKDSETWlssvqSYFPSRNVVkahSSMSCIrsNASVAKLDGKIYVFGGDDGGRGWtNSAESFNQTDGQWSLCPPLNErk 458
Cdd:PLN02193 198 FDLETRTW-----SISPATGDV---PHLSCL--GVRMVSIGSTLYVFGGRDASRQY-NGFYSFDTTTNEWKLLTPVEE-- 264

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 459 gslggatldgkifaiggGNGMVSFsdvemldpdigrwirtRSMGQErfavasvehKSSIYAVGGYDGKEYLNTAERFDPR 538
Cdd:PLN02193 265 -----------------GPTPRSF----------------HSMAAD---------EENVYVFGGVSATARLKTLDSYNIV 302

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 539 EHSWMNIASMK---SRRGCHSLVVLNEKLYAIGGFDGeTMVSSVEIYEPRTGTWMTGEPM---KDLRGYSAVAVVKDSIY 612
Cdd:PLN02193 303 DKKWFHCSTPGdsfSIRGGAGLEVVQGKVWVVYGFNG-CEVDDVHYYDPVQDKWTQVETFgvrPSERSVFASAAVGKHIV 381


                 ....
gi 240256249 613 VIGG 616
Cdd:PLN02193 382 IFGG 385
PHA02790 PHA02790
Kelch-like protein; Provisional
 365-589 9.82e-06

Kelch-like protein; Provisional


Pssm-ID: 165153 [Multi-domain]  Cd Length: 480  Bit Score: 48.50  E-value: 9.82e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 365 TSLDPTEAILLLGGfdkdsetWLSS-VQSYFPSRNVVKAH----SSMSCIRSNASVAKLDGKIYVFGGDDGgrgwTNSAE 439
Cdd:PHA02790 266 TSTHVGEVVYLIGG-------WMNNeIHNNAIAVNYISNNwipiPPMNSPRLYASGVPANNKLYVVGGLPN----PTSVE 334

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 440 SFNQTDGQWSLCPPLNERKGSLGGATLDGKIFAIGGGNGmvSFSDVEMLDPDIGRWIRTRSMGQERFAVASVEHKSSIYA 519
Cdd:PHA02790 335 RWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSE--TDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFL 412

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 520 VGgydgkeylNTAERFDPREHSWMNIASMKSRRGCHSLVVLNEKLYAIGGFDGETMVSSVEIYEPRTGTW 589
Cdd:PHA02790 413 VG--------RNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474
PLN02153 PLN02153
epithiospecifier protein
 410-523 1.16e-05

epithiospecifier protein


Pssm-ID: 177814 [Multi-domain]  Cd Length: 341  Bit Score: 48.06  E-value: 1.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 410 RSNASVAKLDGKIYVFGG-DDGGRGWT----NSAESFNQTDGQWSLCPPLN---ERKGSLGGATLDGKI-----FA---I 473
Cdd:PLN02153 128 RTFHSMASDENHVYVFGGvSKGGLMKTperfRTIEAYNIADGKWVQLPDPGenfEKRGGAGFAVVQGKIwvvygFAtsiL 207

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 240256249 474 GGGNGMVSFSDVEMLDPDIGRWIRTRSMGQERFAVASVEHKssiyAVGGY 523
Cdd:PLN02153 208 PGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA----VVGKY 253
Kelch_6 pfam13964
Kelch motif;
409-457 2.03e-05

Kelch motif;


Pssm-ID: 404790 [Multi-domain]  Cd Length: 50  Bit Score: 42.32  E-value: 2.03e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 240256249  409 IRSNASVAKLDGKIYVFGGDDGGRGWTNSAESFNQTDGQWSLCPPLNER 457
Cdd:pfam13964   1 PRTFHSVVSVGGYIYVFGGYTNASPALNKLEVYNPLTKSWEELPPLPTP 49
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 599-642 2.49e-05

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 41.83  E-value: 2.49e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 240256249  599 RGYSAVAVVKDSIYVIGGYKGeeDDILDTVECF--KEGEgWKNVPS 642
Cdd:pfam01344   2 RSGAGVVVVGGKIYVIGGFDG--NQSLNSVEVYdpETNT-WSKLPS 44
PLN02193 PLN02193
nitrile-specifier protein
 506-654 3.17e-05

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 46.87  E-value: 3.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 506 FAVASVEHKSSIYAVGGYDGKEYLNTAERFDPREHSWMNIASMK---SRRGCHSLVVLNEKLYAIGGFDGETMVSSVEIY 582
Cdd:PLN02193 220 LGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEegpTPRSFHSMAADEENVYVFGGVSATARLKTLDSY 299

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 240256249 583 EPRTGTWM-TGEPMKDL--RGYSAVAVVKDSIYVIGGYKGEEddiLDTVECFKEGE-GWKNVPSSSI---GRRCFLSAV 654
Cdd:PLN02193 300 NIVDKKWFhCSTPGDSFsiRGGAGLEVVQGKVWVVYGFNGCE---VDDVHYYDPVQdKWTQVETFGVrpsERSVFASAA 375
Kelch_6 pfam13964
Kelch motif;
555-596 1.22e-04

Kelch motif;


Pssm-ID: 404790 [Multi-domain]  Cd Length: 50  Bit Score: 40.01  E-value: 1.22e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 240256249  555 HSLVVLNEKLYAIGGFDGETMVSS-VEIYEPRTGTWMTGEPMK 596
Cdd:pfam13964   5 HSVVSVGGYIYVFGGYTNASPALNkLEVYNPLTKSWEELPPLP 47
PHA03098 PHA03098
kelch-like protein; Provisional
 373-461 1.31e-04

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 45.14  E-value: 1.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 373 ILLLGGFD-KDSETWLSSVQSYFPSRNVVKAHSSMSCIRSNASVAKLDGKIYVFGGDDGgRGWTNSAESFNQTDGQWSLC 451
Cdd:PHA03098 440 IYVIGGISyIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKY-EYYINEIEVYDDKTNTWTLF 518

                         90
                 ....*....|
gi 240256249 452 PPLNERKGSL 461
Cdd:PHA03098 519 CKFPKVIGSL 528
PLN02772 PLN02772
guanylate kinase
 532-624 1.44e-04

guanylate kinase


Pssm-ID: 215414 [Multi-domain]  Cd Length: 398  Bit Score: 44.83  E-value: 1.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 532 AERFDPREHSWMNIASMKSRrGCHSLVVLNEKLYAIGG-FDGETMVSSVEIYEPRTGTWMT----GEPMKDLRGYSAVAV 606
Cdd:PLN02772   6 AFFVDHLENGYTNGFGVKPK-NRETSVTIGDKTYVIGGnHEGNTLSIGVQILDKITNNWVSpivlGTGPKPCKGYSAVVL 84

                         90
                 ....*....|....*...
gi 240256249 607 VKDSIYVIGGYKGEEDDI 624
Cdd:PLN02772  85 NKDRILVIKKGSAPDDSI 102
PHA02713 PHA02713
hypothetical protein; Provisional
 506-616 4.17e-04

hypothetical protein; Provisional


Pssm-ID: 165086 [Multi-domain]  Cd Length: 557  Bit Score: 43.46  E-value: 4.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 506 FAVASVEHKssIYAVGGYD-GKEYLNTAERFDPREHSWMNIASMKSRRGCHSLVVLNEKLYAIGGFDGETMVSSVEIYEP 584
Cdd:PHA02713 297 YASAIVDNE--IIIAGGYNfNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTM 374

                         90       100       110
                 ....*....|....*....|....*....|..
gi 240256249 585 RTGTWMTGEPMKDLRGYSAVAVVKDSIYVIGG 616
Cdd:PHA02713 375 GDDKWKMLPDMPIALSSYGMCVLDQYIYIIGG 406
Kelch smart00612
Kelch domain;
611-656 5.25e-04

Kelch domain;


Pssm-ID: 128874 [Multi-domain]  Cd Length: 47  Bit Score: 37.92  E-value: 5.25e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 240256249   611 IYVIGGYKGEEddILDTVECFKEGEG-WKNVPSSSIgRRCFLSAVAL 656
Cdd:smart00612   2 IYVVGGFDGGQ--RLKSVEVYDPETNkWTPLPSMPT-PRSGHGVAVI 45
PRK14131 PRK14131
N-acetylneuraminate epimerase;
558-617 1.28e-03

N-acetylneuraminate epimerase;


Pssm-ID: 237617 [Multi-domain]  Cd Length: 376  Bit Score: 41.54  E-value: 1.28e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 240256249 558 VVLNEKLYAIGGF-----DGET-MVSSVEIYEPRTGTW---MTGEPMkDLRGYSAVAVVKDSIYVIGGY 617
Cdd:PRK14131  81 AFIDGKLYVFGGIgktnsEGSPqVFDDVYKYDPKTNSWqklDTRSPV-GLAGHVAVSLHNGKAYITGGV 148
Kelch_3 pfam13415
Galactose oxidase, central domain;
517-560 1.58e-03

Galactose oxidase, central domain;


Pssm-ID: 433188 [Multi-domain]  Cd Length: 49  Bit Score: 36.88  E-value: 1.58e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 240256249  517 IYAVGGYD--GKEYLNTAERFDPREHSWMNIASMKSRRGCHSLVVL 560
Cdd:pfam13415   4 LYIFGGLGfdGQTRLNDLYVYDLDTNTWTQIGDLPPPRSGHSATYI 49
Kelch_2 pfam07646
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 551-590 2.96e-03

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 462220 [Multi-domain]  Cd Length: 47  Bit Score: 36.16  E-value: 2.96e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 240256249  551 RRGCHSLVVLNEKLYAIGGFDGETMVSSVEIYEPRTGTWM 590
Cdd:pfam07646   1 PRYPHASSVPGGKLYVVGGSDGLGDLSSSDVLVYDPETNV 40
PHA02713 PHA02713
hypothetical protein; Provisional
 410-489 4.29e-03

hypothetical protein; Provisional


Pssm-ID: 165086 [Multi-domain]  Cd Length: 557  Bit Score: 39.99  E-value: 4.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256249 410 RSNASVAKLDGKIYVFGGDDGgrgwTN---SAESFNQTDGQWSLCPPLNERKGSLGGATLDGKIFAIGGGNGMVSFSDVE 486
Cdd:PHA02713 342 RCRFSLAVIDDTIYAIGGQNG----TNverTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVH 417


                 ...
gi 240256249 487 MLD 489
Cdd:PHA02713 418 HMN 420
Kelch_2 pfam07646
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 599-642 9.03e-03

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 462220 [Multi-domain]  Cd Length: 47  Bit Score: 34.62  E-value: 9.03e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 240256249  599 RGYSAVAVVKDSIYVIGGYKGEEDDILDTVECFKEGEG-WKNVPS 642
Cdd:pfam07646   2 RYPHASSVPGGKLYVVGGSDGLGDLSSSDVLVYDPETNvWTEVPR 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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