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Conserved domains on  [gi|30679860|ref|NP_195921|]
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Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NanM super family cl34543
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
24-74 1.57e-08

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG3055:

Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 53.62  E-value: 1.57e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 30679860  24 SQQWRSLPKMRQPRASPAAYVKDGLIIVIGGCRSKNIETWGEIYDLKTNTW 74
Cdd:COG3055  99 TNTWTKLAPMPTPRGGATALLLDGKIYVVGGWDDGGNVAWVEVYDPATGTW 149
 
Name Accession Description Interval E-value
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
24-74 1.57e-08

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 53.62  E-value: 1.57e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 30679860  24 SQQWRSLPKMRQPRASPAAYVKDGLIIVIGGCRSKNIETWGEIYDLKTNTW 74
Cdd:COG3055  99 TNTWTKLAPMPTPRGGATALLLDGKIYVVGGWDDGGNVAWVEVYDPATGTW 149
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 36-74 1.13e-06

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 44.14  E-value: 1.13e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 30679860    36 PRASPAAYVKDGLIIVIGGCRSKNIETWGEIYDLKTNTW 74
Cdd:pfam01344   1 RRSGAGVVVVGGKIYVIGGFDGNQSLNSVEVYDPETNTW 39
PHA03098 PHA03098
kelch-like protein; Provisional
 24-74 1.30e-05

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 45.53  E-value: 1.30e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 30679860   24 SQQWRSLPKMRQPRASPAAYVKDGLIIVIGGCrSKNIETWG--EIYDLKTNTW 74
Cdd:PHA03098 367 ESKWREEPPLIFPRYNPCVVNVNNLIYVIGGI-SKNDELLKtvECFSLNTNKW 418
Kelch smart00612
Kelch domain;
48-74 3.45e-03

Kelch domain;


Pssm-ID: 128874 [Multi-domain]  Cd Length: 47  Bit Score: 34.46  E-value: 3.45e-03
                           10        20
                   ....*....|....*....|....*..
gi 30679860     48 LIIVIGGCRSKNIETWGEIYDLKTNTW 74
Cdd:smart00612   1 KIYVVGGFDGGQRLKSVEVYDPETNKW 27
 
Name Accession Description Interval E-value
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
24-74 1.57e-08

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 53.62  E-value: 1.57e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 30679860  24 SQQWRSLPKMRQPRASPAAYVKDGLIIVIGGCRSKNIETWGEIYDLKTNTW 74
Cdd:COG3055  99 TNTWTKLAPMPTPRGGATALLLDGKIYVVGGWDDGGNVAWVEVYDPATGTW 149
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 36-74 1.13e-06

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 44.14  E-value: 1.13e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 30679860    36 PRASPAAYVKDGLIIVIGGCRSKNIETWGEIYDLKTNTW 74
Cdd:pfam01344   1 RRSGAGVVVVGGKIYVIGGFDGNQSLNSVEVYDPETNTW 39
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
26-74 4.90e-06

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 46.30  E-value: 4.90e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 30679860  26 QWRSLPKMRQPRASPAAYVKDGLIIVIGGCRSKNIETWGEIYDLKTNTW 74
Cdd:COG3055   2 TWSSLPDLPTPRSEAAAALLDGKVYVAGGLSGGSASNSFEVYDPATNTW 50
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
24-74 1.10e-05

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 45.15  E-value: 1.10e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 30679860  24 SQQWRSLPKMRQPRASPAAYVKDGLIIVIGGCRSKNIETWgeIYDLKTNTW 74
Cdd:COG3055 184 SNTWTTLAPLPTARAGHAAAVLGGKILVFGGESGFSDEVE--AYDPATNTW 232
PHA03098 PHA03098
kelch-like protein; Provisional
 24-74 1.30e-05

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 45.53  E-value: 1.30e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 30679860   24 SQQWRSLPKMRQPRASPAAYVKDGLIIVIGGCrSKNIETWG--EIYDLKTNTW 74
Cdd:PHA03098 367 ESKWREEPPLIFPRYNPCVVNVNNLIYVIGGI-SKNDELLKtvECFSLNTNKW 418
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
21-74 5.23e-04

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 40.14  E-value: 5.23e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 30679860  21 DCRSQQWRSLPKM-RQPRASPAAYVKDGLIIVIGGCRSKNIETW----GEIYDLKTNTW 74
Cdd:COG3055  44 DPATNTWSELAPLpGPPRHHAAAVAQDGKLYVFGGFTGANPSSTplndVYVYDPATNTW 102
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
21-76 1.94e-03

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 38.60  E-value: 1.94e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 30679860  21 DCRSQQWRSLPKMRQPRASP-AAYVKDGLIIVIGGCRSK-NIETWGEIYDLKTNTWGR 76
Cdd:COG3055 143 DPATGTWTQLAPLPTPRDHLaAAVLPDGKILVIGGRNGSgFSNTWTTLAPLPTARAGH 200
Kelch_4 pfam13418
Galactose oxidase, central domain;
36-77 3.28e-03

Galactose oxidase, central domain;


Pssm-ID: 433191 [Multi-domain]  Cd Length: 49  Bit Score: 34.51  E-value: 3.28e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 30679860    36 PRASPAA-YVKDGLIIVIGGCRSKNI---ETWgeIYDLKTNTWGRI 77
Cdd:pfam13418   1 PRAYHTStSIPDDTIYLFGGEGEDGTllsDLW--VFDLSTNEWTRL 44
Kelch smart00612
Kelch domain;
48-74 3.45e-03

Kelch domain;


Pssm-ID: 128874 [Multi-domain]  Cd Length: 47  Bit Score: 34.46  E-value: 3.45e-03
                           10        20
                   ....*....|....*....|....*..
gi 30679860     48 LIIVIGGCRSKNIETWGEIYDLKTNTW 74
Cdd:smart00612   1 KIYVVGGFDGGQRLKSVEVYDPETNKW 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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