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Conserved domains on  [gi|15240081|ref|NP_196270|]
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SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

Protein Classification

SWAP/Surp domain-containing protein( domain architecture ID 10652730)

SWAP (Suppressor-of-White-APricot)/Surp domain-containing protein may bind RNA

CATH:  1.10.10.790
Gene Ontology:  GO:0003723|GO:0006396
SCOP:  4002548

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 489-540 9.90e-18

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


:

Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 77.17  E-value: 9.90e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15240081   489 GIIKLTAQFMARYGMNFVQGLRKRVVGNPQFKFLESTNNSRFSFYNGLVIAY 540
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFDPDDPLHAYYRWKLEEY 52
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 402-454 1.56e-15

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


:

Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 71.08  E-value: 1.56e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 15240081    402 RSCVENTALIVSKNGLEIERKMMELSMNDARHRFVWSTDPYHAFYQLKLAEYR 454
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYR 53
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 219-272 4.67e-15

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


:

Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 69.54  E-value: 4.67e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 15240081    219 LDTIKLTAQFVAVYGTLFRTELMKRVFISPKFDFFKSTDSKCSFYLRLVDGYSR 272
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYRQ 54
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 90-142 8.14e-15

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


:

Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 69.15  E-value: 8.14e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 15240081     90 LELIKLTAQFVAVYGKYFQRELTTRVVESPLFEFLKPTDSRNSFYTRIILGYQ 142
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYR 53
 
Name Accession Description Interval E-value
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 489-540 9.90e-18

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 77.17  E-value: 9.90e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15240081   489 GIIKLTAQFMARYGMNFVQGLRKRVVGNPQFKFLESTNNSRFSFYNGLVIAY 540
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFDPDDPLHAYYRWKLEEY 52
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 402-454 1.56e-15

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 71.08  E-value: 1.56e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 15240081    402 RSCVENTALIVSKNGLEIERKMMELSMNDARHRFVWSTDPYHAFYQLKLAEYR 454
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYR 53
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 219-272 4.67e-15

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 69.54  E-value: 4.67e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 15240081    219 LDTIKLTAQFVAVYGTLFRTELMKRVFISPKFDFFKSTDSKCSFYLRLVDGYSR 272
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYRQ 54
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 90-142 8.14e-15

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 69.15  E-value: 8.14e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 15240081     90 LELIKLTAQFVAVYGKYFQRELTTRVVESPLFEFLKPTDSRNSFYTRIILGYQ 142
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYR 53
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 488-542 4.67e-14

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 66.84  E-value: 4.67e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 15240081    488 LGIIKLTAQFMARYGMNFVQGLRKRVVGNPQFKFLEStNNSRFSFYNGLVIAYSR 542
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKP-NDPYHAYYRKKLAEYRQ 54
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 220-270 2.06e-12

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 62.15  E-value: 2.06e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15240081   220 DTIKLTAQFVAVYGTLFRTELMKRVFISPKFDF-FKSTDSKCSFYLRLVDGY 270
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFlFDPDDPLHAYYRWKLEEY 52
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 91-141 2.41e-12

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 61.77  E-value: 2.41e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15240081    91 ELIKLTAQFVAVYGKYFQRELTTRVVESPLFEFLKPT-DSRNSFYTRIILGY 141
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFDPdDPLHAYYRWKLEEY 52
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 405-453 2.03e-11

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 59.07  E-value: 2.03e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15240081   405 VENTALIVSKNGLEIERKMMELSMNDARHRFVWST-DPYHAFYQLKLAEY 453
Cdd:pfam01805   3 IKKTAQFVARNGPEFEALLMEREERNPQFDFLFDPdDPLHAYYRWKLEEY 52
 
Name Accession Description Interval E-value
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 489-540 9.90e-18

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 77.17  E-value: 9.90e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15240081   489 GIIKLTAQFMARYGMNFVQGLRKRVVGNPQFKFLESTNNSRFSFYNGLVIAY 540
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFDPDDPLHAYYRWKLEEY 52
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 402-454 1.56e-15

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 71.08  E-value: 1.56e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 15240081    402 RSCVENTALIVSKNGLEIERKMMELSMNDARHRFVWSTDPYHAFYQLKLAEYR 454
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYR 53
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 219-272 4.67e-15

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 69.54  E-value: 4.67e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 15240081    219 LDTIKLTAQFVAVYGTLFRTELMKRVFISPKFDFFKSTDSKCSFYLRLVDGYSR 272
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYRQ 54
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 90-142 8.14e-15

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 69.15  E-value: 8.14e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 15240081     90 LELIKLTAQFVAVYGKYFQRELTTRVVESPLFEFLKPTDSRNSFYTRIILGYQ 142
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYR 53
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 488-542 4.67e-14

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 66.84  E-value: 4.67e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 15240081    488 LGIIKLTAQFMARYGMNFVQGLRKRVVGNPQFKFLEStNNSRFSFYNGLVIAYSR 542
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKP-NDPYHAYYRKKLAEYRQ 54
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 220-270 2.06e-12

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 62.15  E-value: 2.06e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15240081   220 DTIKLTAQFVAVYGTLFRTELMKRVFISPKFDF-FKSTDSKCSFYLRLVDGY 270
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFlFDPDDPLHAYYRWKLEEY 52
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 91-141 2.41e-12

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 61.77  E-value: 2.41e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15240081    91 ELIKLTAQFVAVYGKYFQRELTTRVVESPLFEFLKPT-DSRNSFYTRIILGY 141
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFDPdDPLHAYYRWKLEEY 52
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 405-453 2.03e-11

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 59.07  E-value: 2.03e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15240081   405 VENTALIVSKNGLEIERKMMELSMNDARHRFVWST-DPYHAFYQLKLAEY 453
Cdd:pfam01805   3 IKKTAQFVARNGPEFEALLMEREERNPQFDFLFDPdDPLHAYYRWKLEEY 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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