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Conserved domains on  [gi|22326653|ref|NP_196408|]
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Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11469232)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
28-220 1.10e-28

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 112.72  E-value: 1.10e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653  28 LRDSKLKTFPDEVIEMERaVRTLDLTHNKIADVPGEISKLINMQRLLIADNLVERLPGNLGKLQSLKVLMLDGNRISCLP 107
Cdd:COG4886 120 LSGNQLTDLPEELANLTN-LKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITDLP 198

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653 108 DELGQLVRLEQLSISRNMLiylpdtigslrnllllnvsnnrlKSLPESVGSCASLEEVQANDNVVEELPaSLCNLIQLKS 187
Cdd:COG4886 199 EPLGNLTNLEELDLSGNQL-----------------------TDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLTNLEE 254

                       170       180       190
                ....*....|....*....|....*....|...
gi 22326653 188 LSLDNNQVNQIPDglLIHCKSLQNLSLHNNPIS 220
Cdd:COG4886 255 LDLSNNQLTDLPP--LANLTNLKTLDLSNNQLT 285
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
28-220 1.10e-28

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 112.72  E-value: 1.10e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653  28 LRDSKLKTFPDEVIEMERaVRTLDLTHNKIADVPGEISKLINMQRLLIADNLVERLPGNLGKLQSLKVLMLDGNRISCLP 107
Cdd:COG4886 120 LSGNQLTDLPEELANLTN-LKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITDLP 198

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653 108 DELGQLVRLEQLSISRNMLiylpdtigslrnllllnvsnnrlKSLPESVGSCASLEEVQANDNVVEELPaSLCNLIQLKS 187
Cdd:COG4886 199 EPLGNLTNLEELDLSGNQL-----------------------TDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLTNLEE 254

                       170       180       190
                ....*....|....*....|....*....|...
gi 22326653 188 LSLDNNQVNQIPDglLIHCKSLQNLSLHNNPIS 220
Cdd:COG4886 255 LDLSNNQLTDLPP--LANLTNLKTLDLSNNQLT 285
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
28-217 3.92e-12

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 65.87  E-value: 3.92e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653   28 LRDSKLKTFPDEvieMERAVRTLDLTHNKIADVPGEISKLINMQRLLIAD--NLVERLPgnlgklQSLKVLMLDGNRISC 105
Cdd:PRK15370 206 LDNNELKSLPEN---LQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRitELPERLP------SALQSLDLFHNKISC 276

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653  106 LPDELGQlvRLEQLSISRNMLIYLPDTIgsLRNLLLLNVSNNRLKSLPESVGscASLEEVQANDNVVEELPASLCNliQL 185
Cdd:PRK15370 277 LPENLPE--ELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASLPP--EL 348

                        170       180       190
                 ....*....|....*....|....*....|..
gi 22326653  186 KSLSLDNNQVNQIPDGLlihCKSLQNLSLHNN 217
Cdd:PRK15370 349 QVLDVSKNQITVLPETL---PPTITTLDVSRN 377
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 39-220 6.13e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 54.79  E-value: 6.13e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653  39 EVIEMERAVRTLDLTHNKIADVPGeISKLINMQRLLIADNLVERLPgNLGKLQSLKVLMLDGNRISCLpDELGQLVRLEQ 118
Cdd:cd21340  18 DNLSLCKNLKVLYLYDNKITKIEN-LEFLTNLTHLYLQNNQIEKIE-NLENLVNLKKLYLGGNRISVV-EGLENLTNLEE 94

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653 119 LSISR------NMLIYLPDTIgslrnllllnvsnnrlKSLpesvgsCASLEEVQANDNVVEELpASLCNLIQLKSLSLDN 192
Cdd:cd21340  95 LHIENqrlppgEKLTFDPRSL----------------AAL------SNSLRVLNISGNNIDSL-EPLAPLRNLEQLDASN 151

                       170       180       190
                ....*....|....*....|....*....|
gi 22326653 193 NQVNQIPD--GLLIHCKSLQNLSLHNNPIS 220
Cdd:cd21340 152 NQISDLEEllDLLSSWPSLRELDLTGNPVC 181
LRR_8 pfam13855
Leucine rich repeat;
69-126 1.51e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.04  E-value: 1.51e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653    69 NMQRLLIADNLVERL-PGNLGKLQSLKVLMLDGNRISCL-PDELGQLVRLEQLSISRNML 126
Cdd:pfam13855   2 NLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
28-220 1.10e-28

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 112.72  E-value: 1.10e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653  28 LRDSKLKTFPDEVIEMERaVRTLDLTHNKIADVPGEISKLINMQRLLIADNLVERLPGNLGKLQSLKVLMLDGNRISCLP 107
Cdd:COG4886 120 LSGNQLTDLPEELANLTN-LKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITDLP 198

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653 108 DELGQLVRLEQLSISRNMLiylpdtigslrnllllnvsnnrlKSLPESVGSCASLEEVQANDNVVEELPaSLCNLIQLKS 187
Cdd:COG4886 199 EPLGNLTNLEELDLSGNQL-----------------------TDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLTNLEE 254

                       170       180       190
                ....*....|....*....|....*....|...
gi 22326653 188 LSLDNNQVNQIPDglLIHCKSLQNLSLHNNPIS 220
Cdd:COG4886 255 LDLSNNQLTDLPP--LANLTNLKTLDLSNNQLT 285
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
48-220 2.15e-28

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 111.95  E-value: 2.15e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653  48 RTLDLTHNKIADVPGEISKLINMQRLLIADNLVERLPGNLGKLQSLKVLMLDGNRISCLPDELGQLVRLEQLSISRNMLi 127
Cdd:COG4886 116 ESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQI- 194

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653 128 ylpdtigslrnllllnvsnnrlKSLPESVGSCASLEEVQANDNVVEELPASLCNLIQLKSLSLDNNQVNQIPDglLIHCK 207
Cdd:COG4886 195 ----------------------TDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLPE--LGNLT 250

                       170
                ....*....|...
gi 22326653 208 SLQNLSLHNNPIS 220
Cdd:COG4886 251 NLEELDLSNNQLT 263
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
28-220 2.33e-25

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 103.47  E-value: 2.33e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653  28 LRDSKLKTFPDEVIEMERAVRTLDLTHNKiadvpgEISKLINMQRLLIADNLVERLPGNLGKLQSLKVLMLDGNRISCLP 107
Cdd:COG4886  79 LLLLSLLLLGLTDLGDLTNLTELDLSGNE------ELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLP 152

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653 108 DELGQLVRLEQLSISRNMLiylpdtigslrnllllnvsnnrlKSLPESVGSCASLEEVQANDNVVEELPASLCNLIQLKS 187
Cdd:COG4886 153 EPLGNLTNLKSLDLSNNQL-----------------------TDLPEELGNLTNLKELDLSNNQITDLPEPLGNLTNLEE 209

                       170       180       190
                ....*....|....*....|....*....|...
gi 22326653 188 LSLDNNQVNQIPDGlLIHCKSLQNLSLHNNPIS 220
Cdd:COG4886 210 LDLSGNQLTDLPEP-LANLTNLETLDLSNNQLT 241
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
26-226 1.72e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 75.36  E-value: 1.72e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653  26 VGLRDSKLKTFPDEVIEMERaVRTLDLTHNKIADVPGEISKLINMQRLLIADNLVERLPGNLGKLQSLKVLMLDGNRISC 105
Cdd:COG4886 164 LDLSNNQLTDLPEELGNLTN-LKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTD 242

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653 106 LPdELGQLVRLEQLSISRNMLIYLPDtIGSLRNLLLLNVSNNRLKSLPESVGSCASLEEVQANDNVVEELPASLCNLIQL 185
Cdd:COG4886 243 LP-ELGNLTNLEELDLSNNQLTDLPP-LANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLL 320

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 22326653 186 KSLSLDNNQVNQIPDGLLIHCKSLQNLSLHNNPISMDQFQL 226
Cdd:COG4886 321 TTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSL 361
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
49-220 5.41e-13

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 68.04  E-value: 5.41e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653  49 TLDLTHNKIADVPGEISKLINMQRLLIADNLVERLPGNLGKLQSLKVLMLDGNrisclpDELGQLVRLEQLSISRNMLiy 128
Cdd:COG4886  54 SLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN------EELSNLTNLESLDLSGNQL-- 125

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653 129 lpdtigslrnllllnvsnnrlKSLPESVGSCASLEEVQANDNVVEELPASLCNLIQLKSLSLDNNQVNQIPDGLLiHCKS 208
Cdd:COG4886 126 ---------------------TDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELG-NLTN 183

                       170
                ....*....|..
gi 22326653 209 LQNLSLHNNPIS 220
Cdd:COG4886 184 LKELDLSNNQIT 195
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
28-217 3.92e-12

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 65.87  E-value: 3.92e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653   28 LRDSKLKTFPDEvieMERAVRTLDLTHNKIADVPGEISKLINMQRLLIAD--NLVERLPgnlgklQSLKVLMLDGNRISC 105
Cdd:PRK15370 206 LDNNELKSLPEN---LQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRitELPERLP------SALQSLDLFHNKISC 276

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653  106 LPDELGQlvRLEQLSISRNMLIYLPDTIgsLRNLLLLNVSNNRLKSLPESVGscASLEEVQANDNVVEELPASLCNliQL 185
Cdd:PRK15370 277 LPENLPE--ELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASLPP--EL 348

                        170       180       190
                 ....*....|....*....|....*....|..
gi 22326653  186 KSLSLDNNQVNQIPDGLlihCKSLQNLSLHNN 217
Cdd:PRK15370 349 QVLDVSKNQITVLPETL---PPTITTLDVSRN 377
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 39-220 6.13e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 54.79  E-value: 6.13e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653  39 EVIEMERAVRTLDLTHNKIADVPGeISKLINMQRLLIADNLVERLPgNLGKLQSLKVLMLDGNRISCLpDELGQLVRLEQ 118
Cdd:cd21340  18 DNLSLCKNLKVLYLYDNKITKIEN-LEFLTNLTHLYLQNNQIEKIE-NLENLVNLKKLYLGGNRISVV-EGLENLTNLEE 94

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653 119 LSISR------NMLIYLPDTIgslrnllllnvsnnrlKSLpesvgsCASLEEVQANDNVVEELpASLCNLIQLKSLSLDN 192
Cdd:cd21340  95 LHIENqrlppgEKLTFDPRSL----------------AAL------SNSLRVLNISGNNIDSL-EPLAPLRNLEQLDASN 151

                       170       180       190
                ....*....|....*....|....*....|
gi 22326653 193 NQVNQIPD--GLLIHCKSLQNLSLHNNPIS 220
Cdd:cd21340 152 NQISDLEEllDLLSSWPSLRELDLTGNPVC 181
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 47-217 6.57e-09

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 56.39  E-value: 6.57e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653   47 VRTLDLTHNK-IADVPGEISKLINMQRLLIADN-LVERLPGNLGKLQSLKVLMLDGNRISC-LPDELGQLVRLEQLSISR 123
Cdd:PLN00113 166 LKVLDLGGNVlVGKIPNSLTNLTSLEFLTLASNqLVGQIPRELGQMKSLKWIYLGYNNLSGeIPYEIGGLTSLNHLDLVY 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653  124 NMLIylpdtigslrnllllnvsnnrlKSLPESVGSCASLEEVQANDN-VVEELPASLCNLIQLKSLSL-DNNQVNQIPDg 201
Cdd:PLN00113 246 NNLT----------------------GPIPSSLGNLKNLQYLFLYQNkLSGPIPPSIFSLQKLISLDLsDNSLSGEIPE- 302

                        170
                 ....*....|....*.
gi 22326653  202 LLIHCKSLQNLSLHNN 217
Cdd:PLN00113 303 LVIQLQNLEILHLFSN 318
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 49-217 4.68e-08

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 53.70  E-value: 4.68e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653   49 TLDLTHNKIAdvpGEISKL-INMQRL----LIADNLVERLPGNLGKLQSLKVLMLDGNRISC-LPDELGQLVRLEQLSIS 122
Cdd:PLN00113 288 SLDLSDNSLS---GEIPELvIQLQNLeilhLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGeIPKNLGKHNNLTVLDLS 364

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653  123 RNMLI-YLPDTIGSLRNLLLLNVSNNRLKS-LPESVGSCASLEEVQANDNVVE-ELPASLCNLIQLKSLSLDNNQVNQIP 199
Cdd:PLN00113 365 TNNLTgEIPEGLCSSGNLFKLILFSNSLEGeIPKSLGACRSLRRVRLQDNSFSgELPSEFTKLPLVYFLDISNNNLQGRI 444

                        170
                 ....*....|....*...
gi 22326653  200 DGLLIHCKSLQNLSLHNN 217
Cdd:PLN00113 445 NSRKWDMPSLQMLSLARN 462
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
35-179 1.11e-06

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 49.31  E-value: 1.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653   35 TFPDEVIEME--------------RAVRTLDLTHNKIADVPGEISKliNMQRLLIADN----LVERLPGNLGKL------ 90
Cdd:PRK15370 238 TLPDTIQEMElsinritelperlpSALQSLDLFHNKISCLPENLPE--ELRYLSVYDNsirtLPAHLPSGITHLnvqsns 315

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653   91 ---------QSLKVLMLDGNRISCLPDELGQLVR-------------------LEQLSISRNMLIYLPDtigslrnllll 142
Cdd:PRK15370 316 ltalpetlpPGLKTLEAGENALTSLPASLPPELQvldvsknqitvlpetlpptITTLDVSRNALTNLPE----------- 384

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 22326653  143 nvsnnrlkSLPesvgscASLEEVQANDNVVEELPASL 179
Cdd:PRK15370 385 --------NLP------AALQIMQASRNNLVRLPESL 407
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 37-234 8.59e-06

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 46.76  E-value: 8.59e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653   37 PDEVIEMERAVRTLDLTHNKIAdvpGEISK--LINMQRLLIADNLVE-RLPGNLGKLQSLKVLMLDGNRISC-LPDELGQ 112
Cdd:PLN00113 110 PDDIFTTSSSLRYLNLSNNNFT---GSIPRgsIPNLETLDLSNNMLSgEIPNDIGSFSSLKVLDLGGNVLVGkIPNSLTN 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653  113 LVRLEQLSISRNMLI-YLPDTIGSLRNLL-LLNVSNNRLKSLPESVGSCASLEEVQ-ANDNVVEELPASLCNLIQLKSLS 189
Cdd:PLN00113 187 LTSLEFLTLASNQLVgQIPRELGQMKSLKwIYLGYNNLSGEIPYEIGGLTSLNHLDlVYNNLTGPIPSSLGNLKNLQYLF 266

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 22326653  190 LDNNQVN-QIPDGLLiHCKSLQNLSLHNNPISMDQFQLMEGYQDFE 234
Cdd:PLN00113 267 LYQNKLSgPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLE 311
PLN03150 PLN03150
hypothetical protein; Provisional
 60-126 2.21e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 45.19  E-value: 2.21e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22326653   60 VPGEISKLINMQRLLIADNLVE-RLPGNLGKLQSLKVLMLDGNRIS-CLPDELGQLVRLEQLSISRNML 126
Cdd:PLN03150 434 IPNDISKLRHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFNgSIPESLGQLTSLRILNLNGNSL 502
LRR_8 pfam13855
Leucine rich repeat;
69-126 1.51e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.04  E-value: 1.51e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653    69 NMQRLLIADNLVERL-PGNLGKLQSLKVLMLDGNRISCL-PDELGQLVRLEQLSISRNML 126
Cdd:pfam13855   2 NLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
150-231 1.83e-04

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 42.38  E-value: 1.83e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653  150 KSLPESVGscASLEEVQANDNVVEELPASLCNLIQLksLSLDNNQVNQIPDGLlihCKSLQNLSLHNNPISMDQFQLMEG 229
Cdd:PRK15370 212 KSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQE--MELSINRITELPERL---PSALQSLDLFHNKISCLPENLPEE 284


                 ..
gi 22326653  230 YQ 231
Cdd:PRK15370 285 LR 286
PLN03150 PLN03150
hypothetical protein; Provisional
 15-111 4.20e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 41.34  E-value: 4.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653   15 NRISRWRSTGiVGLRDSKLKTFPDEVIEMERAVRTLDLTHNKI-ADVPGEISKLINMQRLLIADN-LVERLPGNLGKLQS 92
Cdd:PLN03150 413 STKGKWFIDG-LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIrGNIPPSLGSITSLEVLDLSYNsFNGSIPESLGQLTS 491

                         90       100
                 ....*....|....*....|
gi 22326653   93 LKVLMLDGNRISC-LPDELG 111
Cdd:PLN03150 492 LRILNLNGNSLSGrVPAALG 511
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
70-227 7.23e-04

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 40.53  E-value: 7.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653   70 MQRLLIADNLVERLPGNLGKLQSLKVLmldGNRISCLPDELGQLvrlEQLSISRNMLIYLPDTIGSLRNLLLLNVSNNRL 149
Cdd:PRK15387 304 LQELSVSDNQLASLPALPSELCKLWAY---NNQLTSLPTLPSGL---QELSVSDNQLASLPTLPSELYKLWAYNNRLTSL 377

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326653  150 KSLPESVGSC--------------ASLEEVQANDNVVEELPASLCNLIqlkSLSLDNNQVNQIPDGlLIHCKSLQNLSLH 215
Cdd:PRK15387 378 PALPSGLKELivsgnrltslpvlpSELKELMVSGNRLTSLPMLPSGLL---SLSVYRNQLTRLPES-LIHLSSETTVNLE 453

                        170
                 ....*....|..
gi 22326653  216 NNPISMDQFQLM 227
Cdd:PRK15387 454 GNPLSERTLQAL 465
LRR_8 pfam13855
Leucine rich repeat;
181-219 9.06e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 34.04  E-value: 9.06e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 22326653   181 NLIQLKSLSLDNNQVNQIPDGLLIHCKSLQNLSLHNNPI 219
Cdd:pfam13855  23 GLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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