|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
432-586 |
5.05e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 80.82 E-value: 5.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 432 AQVHMASGRFVEAVEAIQRAGKLDGNNREvsmvlrraqavtAARSRGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNR 511
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAE------------ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15238058 512 AACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLGNWESAVGDYEILRKETPEDEEVIKGLSEAQKQL 586
Cdd:COG0457 83 GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
381-586 |
2.38e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 75.81 E-value: 2.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 381 PQVYALQAEAFLKTYRHQEA----DDALSRCPvfdgemstkyygsiGYAGFLVVWAQVHMASGRFVEAVEAIQRAGKLDG 456
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAiedyEKALELDP--------------DDAEALYNLGLAYLRLGRYEEALADYEQALELDP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 457 NNrevsmvlrraqaVTAARSRGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNRAACLSKMGQFDRAVEDTSAALAVRP 536
Cdd:COG0457 74 DD------------AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 15238058 537 GYTKARLRRADCNAKLGNWESAVGDYEILRKETPEDEEVIKGLSEAQKQL 586
Cdd:COG0457 142 DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALA 191
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
289-588 |
2.65e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 76.31 E-value: 2.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 289 EAVFECREAIRIDPHYHRAHHRLANLYLRLGEVEnsiyhfkhagpeadqediskakmvqthlnkctEAKRLrdWNTLIKE 368
Cdd:COG2956 26 KAIDLLEEALELDPETVEAHLALGNLYRRRGEYD--------------------------------RAIRI--HQKLLER 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 369 TENtittgadaAPQVYALQAEAFLKTYRHQEADDALSRCpvfdgeMSTKYYgsigYAGFLVVWAQVHMASGRFVEAVEAI 448
Cdd:COG2956 72 DPD--------RAEALLELAQDYLKAGLLDRAEELLEKL------LELDPD----DAEALRLLAEIYEQEGDWEKAIEVL 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 449 QRAGKLDGNNREVSMVLrraqavtaarsrGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNRAACLSKMGQFDRAVEDT 528
Cdd:COG2956 134 ERLLKLGPENAHAYCEL------------AELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAAL 201
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15238058 529 SAALAVRPGYTKARLRRADCNAKLGNWESAVGDYEILRKETPEDEEVI---------KGLSEAQKQLVK 588
Cdd:COG2956 202 ERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLaladllerkEGLEAALALLER 270
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
432-572 |
3.10e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 72.92 E-value: 3.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 432 AQVHMASGRFVEAVEAIQRAGKLDGNNREvsmvlrraqavtAARSRGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNR 511
Cdd:COG4783 11 AQALLLAGDYDEAEALLEKALELDPDNPE------------AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15238058 512 AACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLGNWESAVGDYEILRKETPED 572
Cdd:COG4783 79 GLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
264-590 |
5.68e-14 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 71.96 E-value: 5.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 264 ISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVENSIYHFKHAgpeadqediska 343
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQA------------ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 344 kmvqthlnkcteakrlrdwntliketentittgadaapqvyalqaeaflktyrhqeaddaLSRCPvfdgemstkyygsiG 423
Cdd:COG0457 69 ------------------------------------------------------------LELDP--------------D 74
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 424 YAGFLVVWAQVHMASGRFVEAVEAIQRAGKLDGNNREvsmvlrraqavtAARSRGNDFFKAGRFQEACTAYGEGLDHDSR 503
Cdd:COG0457 75 DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE------------ALYNLGLALLELGRYDEAIEAYERALELDPD 142
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 504 NSVLLCNRAACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLGNWESAVGDYEILRKETPEDEEVIKGLSEAQ 583
Cdd:COG0457 143 DADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAEL 222
|
....*..
gi 15238058 584 KQLVKRR 590
Cdd:COG0457 223 LLLALAL 229
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
426-574 |
5.38e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 68.40 E-value: 5.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 426 GFLVVWAQVHMASGRFVEAVEAIQRAGKLDGNNREvsmvLRRAQAVTAARSRGNDFFKAGRFQEACTAYGEGLDHDSRNS 505
Cdd:COG4785 32 AAVLALAIALADLALALAAAALAAAALAAERIDRA----LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLA 107
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15238058 506 VLLCNRAACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLGNWESAVGDYEILRKETPEDEE 574
Cdd:COG4785 108 EAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPE 176
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
377-575 |
7.75e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 71.18 E-value: 7.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 377 ADAAPQVYALQAEAFLKTYRHQEADDALSRCPVFDGEMSTKYYGSIGYAGFLVVWAQVHMASGRFVEAVEAIQRAGKLDG 456
Cdd:COG3914 30 AELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNP 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 457 NNREVSMVLrraqavtaarsrGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNRAACLSKMGQFDRAVEDTSAALAVRP 536
Cdd:COG3914 110 DNAEALFNL------------GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP 177
|
170 180 190
....*....|....*....|....*....|....*....
gi 15238058 537 GYTKARLRRADCNAKLGNWESAVGDYEILRKETPEDEEV 575
Cdd:COG3914 178 DNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
468-586 |
1.09e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.60 E-value: 1.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 468 AQAVTAARSRGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNRAACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRAD 547
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 15238058 548 CNAKLGNWESAVGDYEILRKETPEDEEVIKGLSEAQKQL 586
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
280-568 |
1.46e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.22 E-value: 1.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 280 ALTALGRILEAVFECREAIRI-------DPHYHRAHHRLANLYLRLGEVENSIYHFKHAGPEADQEDISKAKMVQTHLnk 352
Cdd:COG2956 44 AHLALGNLYRRRGEYDRAIRIhqkllerDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYE-- 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 353 cteakRLRDWNtliketentittgadaapqvyalQAEAFLKTYRHQEADDALSRCpvfdgEMstkyygsigyagflvvwA 432
Cdd:COG2956 122 -----QEGDWE-----------------------KAIEVLERLLKLGPENAHAYC-----EL-----------------A 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 433 QVHMASGRFVEAVEAIQRAGKLDGNNREVSMVLrraqavtaarsrGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNRA 512
Cdd:COG2956 152 ELYLEQGDYDEAIEALEKALKLDPDCARALLLL------------AELYLEQGDYEEAIAALERALEQDPDYLPALPRLA 219
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 15238058 513 ACLSKMGQFDRAVEDTSAALAVRPGYTkARLRRADCNAKLGNWESAVGDY-EILRKE 568
Cdd:COG2956 220 ELYEKLGDPEEALELLRKALELDPSDD-LLLALADLLERKEGLEAALALLeRQLRRH 275
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
444-565 |
4.11e-12 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 68.86 E-value: 4.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 444 AVEAIQRAGKLDGNNREVSMVLRRAQAVTAARSRGNDFFKAGRFQEACTAYGEGLDHDSrNSVLLCNRAACLSKMGQFDR 523
Cdd:TIGR00990 100 PVEPADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEK 178
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 15238058 524 AVEDTSAALAVRPGYTKARLRRADCNAKLGNWESAVGDYEIL 565
Cdd:TIGR00990 179 VVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTAS 220
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
305-558 |
7.79e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.10 E-value: 7.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 305 HRAHHRLANLYLRLGEVENSIYHFKHAGPEADQEDISKAKMVQTHLNKCTEAKRLRDWNTLIKETENTITTGADAAPQ-V 383
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAaL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 384 YALQAEAFLKTYRHQEA----DDALSRCPvfdgemstkyygsiGYAGFLVVWAQVHMASGRFVEAVEAIQRAGKLDGNNR 459
Cdd:COG3914 81 LELAALLLQALGRYEEAlalyRRALALNP--------------DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 460 EvsmvlrraqavtAARSRGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNRAACLSKMGQFDRAVEDTSAALAVRPGYT 539
Cdd:COG3914 147 E------------AYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNA 214
|
250
....*....|....*....
gi 15238058 540 KARLRRADCNAKLGNWESA 558
Cdd:COG3914 215 DAHSNLLFALRQACDWEVY 233
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
432-586 |
3.57e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.98 E-value: 3.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 432 AQVHMASGRFVEAVEAIQRAGKLDGNNREVSMVLrraqavtaarsrGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNR 511
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLAL------------GNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15238058 512 AACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLGNWESAVGDYEILRKETPEDEEVIKGLSEAQKQL 586
Cdd:COG2956 83 AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQ 157
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
443-574 |
5.04e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.40 E-value: 5.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 443 EAVEAIQRAGKLDGNNREVSMVLrraqavtaarsrGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNRAACLSKMGQFD 522
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLL------------GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 15238058 523 RAVEDTSAALAVRPGYTKARLRRADCNAKLGNWESAVGDYEILRKETPEDEE 574
Cdd:COG4235 69 EAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
431-586 |
1.86e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.86 E-value: 1.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 431 WAQVHMASGRFVEAVEAIQRAGKLDGNNREVSMVLRRAQAVTAARSRGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCN 510
Cdd:COG3914 38 AAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFN 117
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15238058 511 RAACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLGNWESAVGDYEILRKETPEDEEVIKGLSEAQKQL 586
Cdd:COG3914 118 LGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDL 193
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
465-570 |
5.21e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.43 E-value: 5.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 465 LRRAQAVTAARSRGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNRAACLSKMGQFDRAVEDTSAALAVRPGYTKARLR 544
Cdd:COG5010 48 DKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSN 127
|
90 100
....*....|....*....|....*.
gi 15238058 545 RADCNAKLGNWESAVGDYEILRKETP 570
Cdd:COG5010 128 LAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
432-546 |
8.66e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 56.94 E-value: 8.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 432 AQVHMASGRFVEAVEAIQRAGKLDGNNREVsmVLRRAQAvtaarsrgndFFKAGRFQEACTAYGEGLDHDSRNSVLLCNR 511
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADA--LLDLAEA----------LLAAGDTEEAEELLERALALDPDNPEALYLL 91
|
90 100 110
....*....|....*....|....*....|....*
gi 15238058 512 AACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRA 546
Cdd:COG4235 92 GLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEA 126
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
236-331 |
8.75e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 59.64 E-value: 8.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 236 DPETLKIMGNEDYKNGNFAEALALYEAAISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLY 315
Cdd:COG0457 41 DAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLAL 120
|
90
....*....|....*.
gi 15238058 316 LRLGEVENSIYHFKHA 331
Cdd:COG0457 121 LELGRYDEAIEAYERA 136
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
279-544 |
1.24e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 61.16 E-value: 1.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 279 AALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVENSIYHFKHAgpeadqediskakmvqthlnkcteakr 358
Cdd:COG3914 86 LLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRA--------------------------- 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 359 lrdwntliketentITTGADAApQVYALQAEAFLKTYRHQEADDALSRCPVFDGEmstkyygsigYAGFLVVWAQVHMAS 438
Cdd:COG3914 139 --------------LALNPDFA-EAYLNLGEALRRLGRLEEAIAALRRALELDPD----------NAEALNNLGNALQDL 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 439 GRFVEAVEAIQRAGKLDGNNREV-SMVLRraqavtaARSRGNDFFKAGRFQEACTAYGEG--------LDHDSRNSVLLC 509
Cdd:COG3914 194 GRLEEAIAAYRRALELDPDNADAhSNLLF-------ALRQACDWEVYDRFEELLAALARGpselspfaLLYLPDDDPAEL 266
|
250 260 270
....*....|....*....|....*....|....*
gi 15238058 510 NRAAClsKMGQFDRAVEDTSAALAVRPGYTKARLR 544
Cdd:COG3914 267 LALAR--AWAQLVAAAAAPELPPPPNPRDPDRKLR 299
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
481-571 |
2.23e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.79 E-value: 2.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 481 FFKAGRFQEACTAYGEGLDHDSRNSVLLCNRAACLSKMGQFDRAvEDTSAALAVRPGYTKARLRRADCNAKLGNWESAVG 560
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 15238058 561 DYEILRKETPE 571
Cdd:COG3063 81 YLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
377-536 |
2.29e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.51 E-value: 2.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 377 ADAAPQVYALQAEAFLKTYRHQEADDALSRCPVFDGEMSTKYYGSIGYAGFLVVWAQVHMASGRFVEAVEAIQRAGKLDG 456
Cdd:COG5010 6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 457 NNREvsmvlrraqavtAARSRGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNRAACLSKMGQFDRAVEDTSAALAVRP 536
Cdd:COG5010 86 NNPE------------LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
273-592 |
3.03e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 60.10 E-value: 3.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 273 YRSNKSAAltALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVENSIYHFKHA---GPEADQ--EDISKAKMVQ 347
Cdd:TIGR02917 26 IEAAKSYL--QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKAlslGYPKNQvlPLLARAYLLQ 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 348 thlnkcteakrlRDWNTLIKETENTITTGADAAPQVYALQAEAFLKTYRHQEADDALSRCPVFDgemstkyyGSIGYAGF 427
Cdd:TIGR02917 104 ------------GKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID--------PRSLYAKL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 428 LVvwAQVHMASGRFVEAVEAIQRAGKLDGNNREVSMVLRRAQavtaaRSRGNdffkagrFQEACTAYGEGLDHDSRNSVL 507
Cdd:TIGR02917 164 GL--AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL-----LSLGN-------IELALAAYRKAIALRPNNIAV 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 508 LCNRAACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLGNWESAVGDYEILRKETPEDEE--VIKGLSE-AQK 584
Cdd:TIGR02917 230 LLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPalLLAGASEyQLG 309
|
....*...
gi 15238058 585 QLVKRRGH 592
Cdd:TIGR02917 310 NLEQAYQY 317
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
240-563 |
2.81e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 56.53 E-value: 2.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 240 LKIMGNEDYKNGNFAEALALYEAAISIDPKKASYrSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLG 319
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYY-SNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 320 EVENSIYHFKHAGPEADQEDISKAKMVQTHLNKCTEAKrlrdwntlIKEtenTITTGADAAPQVYALQaeAFLKTYRHQE 399
Cdd:TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESK--------AKE---ILETKPENLPSVTFVG--NYLQSFRPKP 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 400 ADDALSRCPVFDGEMSTkyygsigyaGFLVVWAQvHMASG---RFVEAVEAIQRAgkLDGNNrevsmvLRRAQAVtAARS 476
Cdd:TIGR00990 276 RPAGLEDSNELDEETGN---------GQLQLGLK-SPESKadeSYEEAARAFEKA--LDLGK------LGEKEAI-ALNL 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 477 RGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNRAACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLGNWE 556
Cdd:TIGR00990 337 RGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA 416
|
....*..
gi 15238058 557 SAVGDYE 563
Cdd:TIGR00990 417 QAGKDYQ 423
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
236-331 |
5.10e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 55.77 E-value: 5.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 236 DPETLKIMGNEDYKNGNFAEALALYEAAISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLY 315
Cdd:COG3914 111 NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNAL 190
|
90
....*....|....*.
gi 15238058 316 LRLGEVENSIYHFKHA 331
Cdd:COG3914 191 QDLGRLEEAIAAYRRA 206
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
236-404 |
1.57e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 52.70 E-value: 1.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 236 DPETLKIMGNEDYKNGNFAEALALYEAAISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLY 315
Cdd:COG0457 75 DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 316 LRLGEVENSIYHFKHAGPEADQEDISKAKMVQTHLNkcteAKRLRDWNTLIKETENTITTGADAAPQVYALQAEAFLKTY 395
Cdd:COG0457 155 EKLGRYEEALELLEKLEAAALAALLAAALGEAALAL----AAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
|
....*....
gi 15238058 396 RHQEADDAL 404
Cdd:COG0457 231 LALRLAALA 239
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
248-331 |
2.89e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 53.46 E-value: 2.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 248 YKNGNFAEALALYEAAISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVENSIYH 327
Cdd:COG3914 89 QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAA 168
|
....
gi 15238058 328 FKHA 331
Cdd:COG3914 169 LRRA 172
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
248-331 |
7.57e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.19 E-value: 7.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 248 YKNGNFAEALALYEAAISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVENSIYH 327
Cdd:COG5010 65 NKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAA 144
|
....
gi 15238058 328 FKHA 331
Cdd:COG5010 145 LQRA 148
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
264-331 |
1.08e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.09 E-value: 1.08e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15238058 264 ISIDPKKASYRSNKSAALTALGRILEAVfECREAIRIDPHYHRAHHRLANLYLRLGEVENSIYHFKHA 331
Cdd:COG3063 19 LELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
477-586 |
1.59e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 50.11 E-value: 1.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 477 RGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNRAACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLGNWE 556
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110
....*....|....*....|....*....|
gi 15238058 557 SAVGDYEILRKETPEDEEVIKGLSEAQKQL 586
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQE 123
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
264-339 |
1.82e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 49.14 E-value: 1.82e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15238058 264 ISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVENSIYHFKHAgPEADQED 339
Cdd:COG4785 100 LELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKA-LELDPND 174
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
264-332 |
2.48e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.11 E-value: 2.48e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15238058 264 ISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVENSIYHFKHAG 332
Cdd:COG4783 65 LELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
264-406 |
4.35e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.57 E-value: 4.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 264 ISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVENSIYHFKHAgPEADQEDISka 343
Cdd:COG2956 137 LKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERA-LEQDPDYLP-- 213
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15238058 344 kmVQTHLNKCteAKRLRDWNTLIKETENTITTGADAApqVYALQAEAFLKTYRHQEADDALSR 406
Cdd:COG2956 214 --ALPRLAEL--YEKLGDPEEALELLRKALELDPSDD--LLLALADLLERKEGLEAALALLER 270
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
236-331 |
5.20e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.15 E-value: 5.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 236 DPETLKIMGNEDYKNGNFAEALALYEAAISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLY 315
Cdd:COG4235 16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAA 95
|
90
....*....|....*.
gi 15238058 316 LRLGEVENSIYHFKHA 331
Cdd:COG4235 96 FQQGDYAEAIAAWQKL 111
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
434-536 |
1.09e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.39 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 434 VHMASGRFVEAVEAIQRAGKLDGNNrevsmvlrraqaVTAARSRGNDFFKAGRFQEAcTAYGEGLDHDSRNSVLLCNRAA 513
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDN------------ADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAE 67
|
90 100
....*....|....*....|...
gi 15238058 514 CLSKMGQFDRAVEDTSAALAVRP 536
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
511-586 |
1.26e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 1.26e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15238058 511 RAACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLGNWESAVGDYEILRKETPEDEEVIKGLSEAQKQL 586
Cdd:COG5010 60 SDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
243-331 |
1.48e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.18 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 243 MGNEDYKNGNFAEALALYEAAISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVE 322
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89
|
....*....
gi 15238058 323 NSIYHFKHA 331
Cdd:COG4783 90 EALALLEKA 98
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
264-594 |
1.54e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.16 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 264 ISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVEnsiyhfkhagpEADQEDISKA 343
Cdd:TIGR02917 186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFE-----------EAEKHADALL 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 344 KMVQTHLnKCTEAKRLRDWNTliKETENTITTGADA---APQVYALQAEAFLKTYR---HQEA----DDALSRCPVFDG- 412
Cdd:TIGR02917 255 KKAPNSP-LAHYLKALVDFQK--KNYEDARETLQDAlksAPEYLPALLLAGASEYQlgnLEQAyqylNQILKYAPNSHQa 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 413 -------EMSTKYYGSIGY------------AGFLVVWAQVHMASGRFVEAVEAIQRAGKLDGNNREVSMVL-------- 465
Cdd:TIGR02917 332 rrllasiQLRLGRVDEAIAtlspalgldpddPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLgisklsqg 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 466 RRAQAV----TAARSRGN----------DFFKAGRFQEACTAYGEGLDHDSRNSVLLCNRAACLSKMGQFDRAVEDTSAA 531
Cdd:TIGR02917 412 DPSEAIadleTAAQLDPElgradlllilSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKA 491
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15238058 532 LAVRPGYTKARLRRADCNAKLGNWESAVGDYEILRKETPEDEEVIKGLSEaqkqLVKRRGHDS 594
Cdd:TIGR02917 492 LSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG----LYLRTGNEE 550
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
279-331 |
1.95e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.95 E-value: 1.95e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 15238058 279 AALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVENSIYHFKHA 331
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKA 114
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
487-572 |
6.12e-05 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 45.55 E-value: 6.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 487 FQEACTAYGEGLDHDSRNSVLLCNRAACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLGNWESAVGDYEILR 566
Cdd:PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97
|
....*.
gi 15238058 567 KETPED 572
Cdd:PLN03088 98 SLAPGD 103
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
381-505 |
1.17e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.30 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 381 PQVYALQAEAFLKTYRHQEADDALSRCPVFDGEmstkyygsigYAGFLVVWAQVHMASGRFVEAVEAIQRAGKLDGNNre 460
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD----------NADALLDLAEALLAAGDTEEAEELLERALALDPDN-- 84
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 15238058 461 vsmvlrraqaVTAARSRGNDFFKAGRFQEACTAYGEGLDHDSRNS 505
Cdd:COG4235 85 ----------PEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
243-331 |
2.24e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.18 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 243 MGNEDYKNGNFAEALALYEAAISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVE 322
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE 229
|
....*....
gi 15238058 323 NSIYHFKHA 331
Cdd:COG2956 230 EALELLRKA 238
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
270-406 |
2.62e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.33 E-value: 2.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 270 KASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVENSIYHFKHAGPEADQEDISKAKMVQTH 349
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 15238058 350 LNKCTEAKRLRDWNTLIKETENTittgadaaPQVYALQAEAFLKTYRHQEADDALSR 406
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEH--------PEAYLRLARAYRALGRPDEAIAALEK 131
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
480-586 |
4.04e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 4.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 480 DFFKAGRFQEACTAYGEGL----DHDSRNSVLLcNRAACLSKMGQFDRAVEDTSAALAVRPGYTK---ARLRRADCNAKL 552
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLkrypNSPLAPDALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLEL 80
|
90 100 110
....*....|....*....|....*....|....
gi 15238058 553 GNWESAVGDYEILRKETPEDEEVIKglseAQKQL 586
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSEAAKE----ARARL 110
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
280-319 |
1.04e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 37.07 E-value: 1.04e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 15238058 280 ALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLG 319
Cdd:pfam13414 3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
280-325 |
1.14e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 1.14e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 15238058 280 ALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVENSI 325
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI 46
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
508-538 |
1.38e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 1.38e-03
10 20 30
....*....|....*....|....*....|.
gi 15238058 508 LCNRAACLSKMGQFDRAVEDTSAALAVRPGY 538
Cdd:pfam00515 4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
248-323 |
1.56e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 41.52 E-value: 1.56e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15238058 248 YKNGNFAEALALYEAAISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVEN 323
Cdd:COG3914 157 RRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEV 232
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
432-553 |
1.63e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 40.28 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 432 AQVHMASGRFVEAVEAIQRAGKLDGNNREvsmvlrraqavtAARSRGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNR 511
Cdd:COG4785 80 GVAYDSLGDYDLAIADFDQALELDPDLAE------------AYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 15238058 512 AACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLG 553
Cdd:COG4785 148 GIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD 189
|
|
| BTAD |
smart01043 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
279-319 |
2.34e-03 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 38.82 E-value: 2.34e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 15238058 279 AALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLG 319
Cdd:smart01043 69 EALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAG 109
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
514-586 |
2.63e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.46 E-value: 2.63e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15238058 514 CLSKMGQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLGNWESAVgDYEILRKETPEDEEVIKGLSEAQKQL 586
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLEL 72
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
482-558 |
4.14e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 39.09 E-value: 4.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 482 FKAGRFQEACTAYGEGLDHDSRNSVLLCNRAA-CLSKMGQFDRAVEDTSAALAVRPGYTKAR--LRRADCNAKLGNWESA 558
Cdd:COG4700 100 LELGRYDEAIELYEEALTGIFADDPHILLGLAqALFELGRYAEALETLEKLIAKNPDFKSSDahLLYARALEALGDLEAA 179
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
432-594 |
4.58e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 39.51 E-value: 4.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 432 AQVHMASGRFVEAVEAIQRAGKLDGNNrevsmVLRRAQAVTAARSRGnDFFKAGRF-QEActaygEGLDHDSRNSVLLCn 510
Cdd:COG3071 23 GLLALAEGRYARAEKLLSKAAEHSEAP-----LLAYLLAARAAQALG-DYERRDEYlAQA-----LELAPEAELAVLLT- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238058 511 RAACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLGNWESAVGDYEILRK-ETPEDEEVIKGLSEAQKQLVKR 589
Cdd:COG3071 91 RAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKhKALSAEEAQALERRAYLGLLRQ 170
|
....*
gi 15238058 590 RGHDS 594
Cdd:COG3071 171 AARDA 175
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
508-538 |
4.89e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.73 E-value: 4.89e-03
10 20 30
....*....|....*....|....*....|.
gi 15238058 508 LCNRAACLSKMGQFDRAVEDTSAALAVRPGY 538
Cdd:smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
519-575 |
5.37e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 35.64 E-value: 5.37e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 15238058 519 GQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLGNWESAVGDYEILRKETPEDEEV 575
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
|
|
| |
