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Conserved domains on  [gi|15237781|ref|NP_197743|]
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smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1771 pfam08590
Domain of unknown function (DUF1771); This domain is highly charged and may represent a small ...
 245-301 6.42e-13

Domain of unknown function (DUF1771); This domain is highly charged and may represent a small helical extension of the Smr domain (pfam01713), known as N-ext, whose function is not yet clear.


:

Pssm-ID: 462528  Cd Length: 62  Bit Score: 63.31  E-value: 6.42e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15237781   245 SHRKDALKVMRSASNHSRAAQNAFQRYDHASAKQHSDKAREDWLAAEKLNAEAAKKI 301
Cdd:pfam08590   1 RLRAEARKHARKRNELFQKAAEAYRRGDGAAAKELSEQGKEHGEKMEEANRQAAEAI 57
SMR super family cl46904
Small MutS-related domain;
312-428 1.56e-08

Small MutS-related domain;


The actual alignment was detected with superfamily member smart00463:

Pssm-ID: 481244 [Multi-domain]  Cd Length: 80  Bit Score: 51.53  E-value: 1.56e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237781    312 WKLDLHGLHATEAVQALQERLQmieghftvnrsvspnrgrsknaalrsasqepfgrldeegmhcqRTSSRELRNSLQVIT 391
Cdd:smart00463   2 WSLDLHGLTVEEALTALDKFLN-------------------------------------------NARLKGLEQKLVIIT 38

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 15237781    392 GIGKHSR-GQASLPLAVKTFFEDNRYRFDETR-PGVITV 428
Cdd:smart00463  39 GKGKHSLgGKSGVKPALKEHLRVESFRFAEEGnSGVLVV 77
 
Name Accession Description Interval E-value
DUF1771 pfam08590
Domain of unknown function (DUF1771); This domain is highly charged and may represent a small ...
 245-301 6.42e-13

Domain of unknown function (DUF1771); This domain is highly charged and may represent a small helical extension of the Smr domain (pfam01713), known as N-ext, whose function is not yet clear.


Pssm-ID: 462528  Cd Length: 62  Bit Score: 63.31  E-value: 6.42e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15237781   245 SHRKDALKVMRSASNHSRAAQNAFQRYDHASAKQHSDKAREDWLAAEKLNAEAAKKI 301
Cdd:pfam08590   1 RLRAEARKHARKRNELFQKAAEAYRRGDGAAAKELSEQGKEHGEKMEEANRQAAEAI 57
SMR smart00463
Small MutS-related domain;
312-428 1.56e-08

Small MutS-related domain;


Pssm-ID: 214676 [Multi-domain]  Cd Length: 80  Bit Score: 51.53  E-value: 1.56e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237781    312 WKLDLHGLHATEAVQALQERLQmieghftvnrsvspnrgrsknaalrsasqepfgrldeegmhcqRTSSRELRNSLQVIT 391
Cdd:smart00463   2 WSLDLHGLTVEEALTALDKFLN-------------------------------------------NARLKGLEQKLVIIT 38

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 15237781    392 GIGKHSR-GQASLPLAVKTFFEDNRYRFDETR-PGVITV 428
Cdd:smart00463  39 GKGKHSLgGKSGVKPALKEHLRVESFRFAEEGnSGVLVV 77
 
Name Accession Description Interval E-value
DUF1771 pfam08590
Domain of unknown function (DUF1771); This domain is highly charged and may represent a small ...
 245-301 6.42e-13

Domain of unknown function (DUF1771); This domain is highly charged and may represent a small helical extension of the Smr domain (pfam01713), known as N-ext, whose function is not yet clear.


Pssm-ID: 462528  Cd Length: 62  Bit Score: 63.31  E-value: 6.42e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15237781   245 SHRKDALKVMRSASNHSRAAQNAFQRYDHASAKQHSDKAREDWLAAEKLNAEAAKKI 301
Cdd:pfam08590   1 RLRAEARKHARKRNELFQKAAEAYRRGDGAAAKELSEQGKEHGEKMEEANRQAAEAI 57
SMR smart00463
Small MutS-related domain;
312-428 1.56e-08

Small MutS-related domain;


Pssm-ID: 214676 [Multi-domain]  Cd Length: 80  Bit Score: 51.53  E-value: 1.56e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237781    312 WKLDLHGLHATEAVQALQERLQmieghftvnrsvspnrgrsknaalrsasqepfgrldeegmhcqRTSSRELRNSLQVIT 391
Cdd:smart00463   2 WSLDLHGLTVEEALTALDKFLN-------------------------------------------NARLKGLEQKLVIIT 38

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 15237781    392 GIGKHSR-GQASLPLAVKTFFEDNRYRFDETR-PGVITV 428
Cdd:smart00463  39 GKGKHSLgGKSGVKPALKEHLRVESFRFAEEGnSGVLVV 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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