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Conserved domains on  [gi|30689405|ref|NP_197820|]
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Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 11455410)

WD40 repeat domain-containing protein similar to proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
PubMed:  10322433|8090199
SCOP:  4002744

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
245-563 1.41e-39

WD40 repeat [General function prediction only];


:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 150.45  E-value: 1.41e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 245 QEIQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVvEDERC----EEHDvpkidpsciyfevsklSELRPVAVEKDG-- 318
Cdd:COG2319 114 RTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDL-ATGKLlrtlTGHS----------------GAVTSVAFSPDGkl 176

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 319 -ITGSLmspRKTTesacviippKIFRVLD-KPLHEFLGHSGDILDISWSKNNRLL-SASVDNSVRLWQIGCEDCLGIFS- 394
Cdd:COG2319 177 lASGSD---DGTV---------RLWDLATgKLLRTLTGHTGAVRSVAFSPDGKLLaSGSADGTVRLWDLATGKLLRTLTg 244

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 395 HNNYVTSVQFNPvDDDHFISGSIDGKVRIWSASQCQVVD-WADARGIVTAVCYQPDGQAVIIGTLTSDCRFYNV-SGHCL 472
Cdd:COG2319 245 HSGSVRSVAFSP-DGRLLASGSADGTVRLWDLATGELLRtLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLaTGKLL 323

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 473 Q-LDGHiclhnkkkssNKRIIGFQFllqfdSTDPSRVMVASADSQVRI--ISGRNVVHKYKGSRNAGNqiSASFTADGKH 549
Cdd:COG2319 324 RtLTGH----------TGAVRSVAF-----SPDGKTLASGSDDGTVRLwdLATGELLRTLTGHTGAVT--SVAFSPDGRT 386

                       330
                ....*....|....
gi 30689405 550 IVSACDDSSVYVWN 563
Cdd:COG2319 387 LASGSADGTVRLWD 400
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
245-563 1.41e-39

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 150.45  E-value: 1.41e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 245 QEIQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVvEDERC----EEHDvpkidpsciyfevsklSELRPVAVEKDG-- 318
Cdd:COG2319 114 RTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDL-ATGKLlrtlTGHS----------------GAVTSVAFSPDGkl 176

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 319 -ITGSLmspRKTTesacviippKIFRVLD-KPLHEFLGHSGDILDISWSKNNRLL-SASVDNSVRLWQIGCEDCLGIFS- 394
Cdd:COG2319 177 lASGSD---DGTV---------RLWDLATgKLLRTLTGHTGAVRSVAFSPDGKLLaSGSADGTVRLWDLATGKLLRTLTg 244

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 395 HNNYVTSVQFNPvDDDHFISGSIDGKVRIWSASQCQVVD-WADARGIVTAVCYQPDGQAVIIGTLTSDCRFYNV-SGHCL 472
Cdd:COG2319 245 HSGSVRSVAFSP-DGRLLASGSADGTVRLWDLATGELLRtLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLaTGKLL 323

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 473 Q-LDGHiclhnkkkssNKRIIGFQFllqfdSTDPSRVMVASADSQVRI--ISGRNVVHKYKGSRNAGNqiSASFTADGKH 549
Cdd:COG2319 324 RtLTGH----------TGAVRSVAF-----SPDGKTLASGSDDGTVRLwdLATGELLRTLTGHTGAVT--SVAFSPDGRT 386

                       330
                ....*....|....
gi 30689405 550 IVSACDDSSVYVWN 563
Cdd:COG2319 387 LASGSADGTVRLWD 400
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 245-563 2.72e-34

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 132.46  E-value: 2.72e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 245 QEIQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDErceehdvpkidpsCIYFEVSKLSELRPVAVEKDG---ITG 321
Cdd:cd00200   3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------------LLRTLKGHTGPVRDVAASADGtylASG 69

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 322 SLmsprkttESACviippKIFRV-LDKPLHEFLGHSGDILDISWSKNNRLL-SASVDNSVRLWQIGCEDCLGIF-SHNNY 398
Cdd:cd00200  70 SS-------DKTI-----RLWDLeTGECVRTLTGHTSYVSSVAFSPDGRILsSSSRDKTIKVWDVETGKCLTTLrGHTDW 137

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 399 VTSVQFNPvdDDHFI-SGSIDGKVRIWSASQCQVVDWADA-RGIVTAVCYQPDGQAVIIGTLTSDCRFYNVS-GHCLQ-L 474
Cdd:cd00200 138 VNSVAFSP--DGTFVaSSSQDGTIKLWDLRTGKCVATLTGhTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLStGKCLGtL 215

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 475 DGHiclhnkkkssNKRIIGFQFllqfdstDPSRVMVASA--DSQVRIISGRN--VVHKYKGSRNAGNqiSASFTADGKHI 550
Cdd:cd00200 216 RGH----------ENGVNSVAF-------SPDGYLLASGseDGTIRVWDLRTgeCVQTLSGHTNSVT--SLAWSPDGKRL 276

                       330
                ....*....|...
gi 30689405 551 VSACDDSSVYVWN 563
Cdd:cd00200 277 ASGSADGTIRIWD 289
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 245-279 7.43e-08

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 48.85  E-value: 7.43e-08
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 30689405    245 QEIQAHEGAILAMKFSPDGRYLASAGEDGVLRVWS 279
Cdd:smart00320   6 KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
245-279 1.56e-06

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 45.03  E-value: 1.56e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 30689405   245 QEIQAHEGAILAMKFSPDGRYLASAGEDGVLRVWS 279
Cdd:pfam00400   5 KTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
245-563 1.41e-39

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 150.45  E-value: 1.41e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 245 QEIQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVvEDERC----EEHDvpkidpsciyfevsklSELRPVAVEKDG-- 318
Cdd:COG2319 114 RTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDL-ATGKLlrtlTGHS----------------GAVTSVAFSPDGkl 176

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 319 -ITGSLmspRKTTesacviippKIFRVLD-KPLHEFLGHSGDILDISWSKNNRLL-SASVDNSVRLWQIGCEDCLGIFS- 394
Cdd:COG2319 177 lASGSD---DGTV---------RLWDLATgKLLRTLTGHTGAVRSVAFSPDGKLLaSGSADGTVRLWDLATGKLLRTLTg 244

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 395 HNNYVTSVQFNPvDDDHFISGSIDGKVRIWSASQCQVVD-WADARGIVTAVCYQPDGQAVIIGTLTSDCRFYNV-SGHCL 472
Cdd:COG2319 245 HSGSVRSVAFSP-DGRLLASGSADGTVRLWDLATGELLRtLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLaTGKLL 323

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 473 Q-LDGHiclhnkkkssNKRIIGFQFllqfdSTDPSRVMVASADSQVRI--ISGRNVVHKYKGSRNAGNqiSASFTADGKH 549
Cdd:COG2319 324 RtLTGH----------TGAVRSVAF-----SPDGKTLASGSDDGTVRLwdLATGELLRTLTGHTGAVT--SVAFSPDGRT 386

                       330
                ....*....|....
gi 30689405 550 IVSACDDSSVYVWN 563
Cdd:COG2319 387 LASGSADGTVRLWD 400
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 245-563 2.72e-34

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 132.46  E-value: 2.72e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 245 QEIQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDErceehdvpkidpsCIYFEVSKLSELRPVAVEKDG---ITG 321
Cdd:cd00200   3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------------LLRTLKGHTGPVRDVAASADGtylASG 69

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 322 SLmsprkttESACviippKIFRV-LDKPLHEFLGHSGDILDISWSKNNRLL-SASVDNSVRLWQIGCEDCLGIF-SHNNY 398
Cdd:cd00200  70 SS-------DKTI-----RLWDLeTGECVRTLTGHTSYVSSVAFSPDGRILsSSSRDKTIKVWDVETGKCLTTLrGHTDW 137

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 399 VTSVQFNPvdDDHFI-SGSIDGKVRIWSASQCQVVDWADA-RGIVTAVCYQPDGQAVIIGTLTSDCRFYNVS-GHCLQ-L 474
Cdd:cd00200 138 VNSVAFSP--DGTFVaSSSQDGTIKLWDLRTGKCVATLTGhTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLStGKCLGtL 215

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 475 DGHiclhnkkkssNKRIIGFQFllqfdstDPSRVMVASA--DSQVRIISGRN--VVHKYKGSRNAGNqiSASFTADGKHI 550
Cdd:cd00200 216 RGH----------ENGVNSVAF-------SPDGYLLASGseDGTIRVWDLRTgeCVQTLSGHTNSVT--SLAWSPDGKRL 276

                       330
                ....*....|...
gi 30689405 551 VSACDDSSVYVWN 563
Cdd:cd00200 277 ASGSADGTIRIWD 289
WD40 COG2319
WD40 repeat [General function prediction only];
245-427 3.45e-24

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 105.38  E-value: 3.45e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 245 QEIQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDErceehdvpkidpsCIYFEVSKLSELRPVAVEKDG---ITG 321
Cdd:COG2319 240 RTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGE-------------LLRTLTGHSGGVNSVAFSPDGkllASG 306

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 322 SLmsprkttesacviipPKIFRVLD----KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCEDCLGIFS-H 395
Cdd:COG2319 307 SD---------------DGTVRLWDlatgKLLRTLTGHTGAVRSVAFSPDgKTLASGSDDGTVRLWDLATGELLRTLTgH 371

                       170       180       190
                ....*....|....*....|....*....|..
gi 30689405 396 NNYVTSVQFNPvDDDHFISGSIDGKVRIWSAS 427
Cdd:COG2319 372 TGAVTSVAFSP-DGRTLASGSADGTVRLWDLA 402
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 348-568 5.95e-18

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 84.69  E-value: 5.95e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 348 PLHEFLGHSGDILDISWS-KNNRLLSASVDNSVRLWQIGCEDCLGIFS-HNNYVTSVQFNPvDDDHFISGSIDGKVRIWS 425
Cdd:cd00200   1 LRRTLKGHTGGVTCVAFSpDGKLLATGSGDGTIKVWDLETGELLRTLKgHTGPVRDVAASA-DGTYLASGSSDKTIRLWD 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 426 ASQCQVVD-WADARGIVTAVCYQPDGQAVIIGTLTSDCRFYNV-SGHCLQ-LDGHiclhnkkkssNKRIIGFQFllqfdS 502
Cdd:cd00200  80 LETGECVRtLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVeTGKCLTtLRGH----------TDWVNSVAF-----S 144

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 30689405 503 TDPSRVMVASADSQVRIISGRN--VVHKYKGSRNAGNqiSASFTADGKHIVSACDDSSVYVWN---------CVGHD 568
Cdd:cd00200 145 PDGTFVASSSQDGTIKLWDLRTgkCVATLTGHTGEVN--SVAFSPDGEKLLSSSSDGTIKLWDlstgkclgtLRGHE 219
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 245-279 7.43e-08

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 48.85  E-value: 7.43e-08
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 30689405    245 QEIQAHEGAILAMKFSPDGRYLASAGEDGVLRVWS 279
Cdd:smart00320   6 KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 237-383 2.25e-07

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 53.11  E-value: 2.25e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30689405 237 ELSALFKGQEIQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDErceehdvpkidpsciyfevsklselrpvavek 316
Cdd:cd00200 205 DLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE-------------------------------- 252

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30689405 317 dgitgslmsprkttesacviippkifrvldkPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQ 383
Cdd:cd00200 253 -------------------------------CVQTLSGHTNSVTSLAWSPDgKRLASGSADGTIRIWD 289
WD40 pfam00400
WD domain, G-beta repeat;
245-279 1.56e-06

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 45.03  E-value: 1.56e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 30689405   245 QEIQAHEGAILAMKFSPDGRYLASAGEDGVLRVWS 279
Cdd:pfam00400   5 KTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 347-382 1.60e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 42.30  E-value: 1.60e-05
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 30689405    347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLW 382
Cdd:smart00320   3 ELLKTLKGHTGPVTSVAFSPDgKYLASGSDDGTIKLW 39
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 389-425 2.11e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 41.91  E-value: 2.11e-05
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 30689405    389 CLGIFS-HNNYVTSVQFNPvDDDHFISGSIDGKVRIWS 425
Cdd:smart00320   4 LLKTLKgHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
347-382 3.08e-05

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 41.56  E-value: 3.08e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 30689405   347 KPLHEFLGHSGDILDISWSKNNRLL-SASVDNSVRLW 382
Cdd:pfam00400   2 KLLKTLEGHTGSVTSLAFSPDGKLLaSGSDDGTVKVW 38
WD40 pfam00400
WD domain, G-beta repeat;
389-425 1.06e-04

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 40.02  E-value: 1.06e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 30689405   389 CLGIFS-HNNYVTSVQFNPvDDDHFISGSIDGKVRIWS 425
Cdd:pfam00400   3 LLKTLEgHTGSVTSLAFSP-DGKLLASGSDDGTVKVWD 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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