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Conserved domains on  [gi|15239502|ref|NP_197954|]
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Exostosin family protein [Arabidopsis thaliana]

Protein Classification

glycosyltransferase family 47 protein( domain architecture ID 10503356)

glycosyltransferase family 47 protein, also called exostosin (EXT) family protein

CAZY:  GT47
Gene Ontology:  GO:0006486|GO:0016757
PubMed:  36960794

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Exostosin pfam03016
Exostosin family; The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on ...
 320-606 3.10e-72

Exostosin family; The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear.


:

Pssm-ID: 397245  Cd Length: 290  Bit Score: 235.01  E-value: 3.10e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   320 MEKILKVYAY----KEGNKPIMHSPILRGIYASEGWFMNIIESNNNKFVTKDPAKAHLFYLPFSSrmlevTLYVQDSHSH 395
Cdd:pfam03016   1 SCKGLKVYVYdlppRFNEDLLQPCRSLTGWYSAEQFLLESILHSRIECRTSDPDEADCFFVPFYA-----SLDASRHLLN 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   396 RNLIKYLKDYIDFISAKYPFWNRTSGADHFLAACHD-WAP-SETRKHMAKSI--RALCNSDVKEGFVFGKDTSLPETFVR 471
Cdd:pfam03016  76 SALTDLFRELLDWLKSQYPYWNRSGGRDHFIVSGHPaWSFrRTAPDVDWGRAmlLNLTVLFSEDQFRPGKDVALPYPTPF 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   472 DPKkPLSNMGGKSANQRPILAFFAGKP---DHGYLRPILLSYWGNNKDPDLKIFgkLPRTKGNKNYLQFMKTSKYCICAK 548
Cdd:pfam03016 156 HPD-IGQWQDISPSNRRKTLLFFAGNRrrgYSGKIRPLLLEECKGNPDADICGG--LQCTPGRDKYMELLRSSRFCLQPP 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15239502   549 GFEVNSPRVVEAIFYDCVPVIISDNFVPPFFEVLNWESFAIFIPEKDIPNLKKILMSI 606
Cdd:pfam03016 233 GDTPTSPRLFDALLAGCIPVIISDGWELPFADVIDWRKFSVFVPENDIPELKSILRSL 290
2A1904 super family cl36772
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 3-230 3.39e-08

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


The actual alignment was detected with superfamily member TIGR00927:

Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 56.93  E-value: 3.39e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502      3 RESPWLWKVESRRLLWLLGLtfaLIV--TFQYIELPYAISSIFS--STKIPISRNSTSLIGNSTSAIAPSPAGDEEEVEV 78
Cdd:TIGR00927   12 RRLLRPKRLHWSRLLFLLGM---LIIgsTYQHLRRPQGLPSLWAavSSQQPIKLASRDLSNDEMMMVSSDPPKSSSEMEG 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502     79 DQI--YDSSG-NATAPAISPTTATLPP-----LLPILKENATAPTANAKAPglnpslVKDHaTAPSPSANPPAALPGLNP 150
Cdd:TIGR00927   89 EMLapQATVGrDEATPSIAMENTPSPPrrtakITPTTPKNNYSPTAAGTER------VKED-TPATPSRALNHYISTSGR 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502    151 SLVKENATAPAPSVKS--------PVALPILNPSTVKENATAPVASAKAPVAlPSINPSPVMKNETLPTTSKVPERNPTK 222
Cdd:TIGR00927  162 QRVKSYTPKPRGEVKSssptqtreKVRKYTPSPLGRMVNSYAPSTFMTMPRS-HGITPRTTVKDSEITATYKMLETNPSK 240


                   ....*...
gi 15239502    223 KNVGDASP 230
Cdd:TIGR00927  241 RTAGKTTP 248
 
Name Accession Description Interval E-value
Exostosin pfam03016
Exostosin family; The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on ...
 320-606 3.10e-72

Exostosin family; The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear.


Pssm-ID: 397245  Cd Length: 290  Bit Score: 235.01  E-value: 3.10e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   320 MEKILKVYAY----KEGNKPIMHSPILRGIYASEGWFMNIIESNNNKFVTKDPAKAHLFYLPFSSrmlevTLYVQDSHSH 395
Cdd:pfam03016   1 SCKGLKVYVYdlppRFNEDLLQPCRSLTGWYSAEQFLLESILHSRIECRTSDPDEADCFFVPFYA-----SLDASRHLLN 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   396 RNLIKYLKDYIDFISAKYPFWNRTSGADHFLAACHD-WAP-SETRKHMAKSI--RALCNSDVKEGFVFGKDTSLPETFVR 471
Cdd:pfam03016  76 SALTDLFRELLDWLKSQYPYWNRSGGRDHFIVSGHPaWSFrRTAPDVDWGRAmlLNLTVLFSEDQFRPGKDVALPYPTPF 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   472 DPKkPLSNMGGKSANQRPILAFFAGKP---DHGYLRPILLSYWGNNKDPDLKIFgkLPRTKGNKNYLQFMKTSKYCICAK 548
Cdd:pfam03016 156 HPD-IGQWQDISPSNRRKTLLFFAGNRrrgYSGKIRPLLLEECKGNPDADICGG--LQCTPGRDKYMELLRSSRFCLQPP 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15239502   549 GFEVNSPRVVEAIFYDCVPVIISDNFVPPFFEVLNWESFAIFIPEKDIPNLKKILMSI 606
Cdd:pfam03016 233 GDTPTSPRLFDALLAGCIPVIISDGWELPFADVIDWRKFSVFVPENDIPELKSILRSL 290
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 3-230 3.39e-08

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 56.93  E-value: 3.39e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502      3 RESPWLWKVESRRLLWLLGLtfaLIV--TFQYIELPYAISSIFS--STKIPISRNSTSLIGNSTSAIAPSPAGDEEEVEV 78
Cdd:TIGR00927   12 RRLLRPKRLHWSRLLFLLGM---LIIgsTYQHLRRPQGLPSLWAavSSQQPIKLASRDLSNDEMMMVSSDPPKSSSEMEG 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502     79 DQI--YDSSG-NATAPAISPTTATLPP-----LLPILKENATAPTANAKAPglnpslVKDHaTAPSPSANPPAALPGLNP 150
Cdd:TIGR00927   89 EMLapQATVGrDEATPSIAMENTPSPPrrtakITPTTPKNNYSPTAAGTER------VKED-TPATPSRALNHYISTSGR 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502    151 SLVKENATAPAPSVKS--------PVALPILNPSTVKENATAPVASAKAPVAlPSINPSPVMKNETLPTTSKVPERNPTK 222
Cdd:TIGR00927  162 QRVKSYTPKPRGEVKSssptqtreKVRKYTPSPLGRMVNSYAPSTFMTMPRS-HGITPRTTVKDSEITATYKMLETNPSK 240


                   ....*...
gi 15239502    223 KNVGDASP 230
Cdd:TIGR00927  241 RTAGKTTP 248
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 49-228 4.66e-07

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 53.38  E-value: 4.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502    49 PISRNSTSliGNSTSAIAPSPAGDEEEVEVDQIYDSSGNATAP---AISPTTATLPPllpilKENATAPTANAKAPGLNP 125
Cdd:pfam05109 476 PTPAGTTS--GASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPtpnATSPTPAVTTP-----TPNATSPTLGKTSPTSAV 548

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   126 SLVKDHATAPSPSANPPAAlpglNPSLVKENATAPAPSVKSPVAlpilnpstvkeNATAPVASAKAPVALPSinpspvmk 205
Cdd:pfam05109 549 TTPTPNATSPTPAVTTPTP----NATIPTLGKTSPTSAVTTPTP-----------NATSPTVGETSPQANTT-------- 605

                         170       180
                  ....*....|....*....|...
gi 15239502   206 NETLPTTSKVPERNPTKKNVGDA 228
Cdd:pfam05109 606 NHTLGGTSSTPVVTSPPKNATSA 628
PHA03247 PHA03247
large tegument protein UL36; Provisional
 44-236 6.91e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.02  E-value: 6.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502    44 SSTKIPISRNSTSLIGNSTSAIAPSPAGDEEEVEVDQIYDSSGNATAPAISPTTATLPPLLPILKENATAPTANA--KAP 121
Cdd:PHA03247 2678 SPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGgpARP 2757

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   122 GLNPSLVKDHATAP--SPSANPPAALP-GLNPSLVKENATAPAPSVKSPVALPILNPSTVKENATAPVA-----SAKAPV 193
Cdd:PHA03247 2758 ARPPTTAGPPAPAPpaAPAAGPPRRLTrPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGplpppTSAQPT 2837

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15239502   194 AlPSINPSPVMKNETL--------PTTSKVPERNPTKKNVGDASPIVRFVP 236
Cdd:PHA03247 2838 A-PPPPPGPPPPSLPLggsvapggDVRRRPPSRSPAAKPAAPARPPVRRLA 2887
 
Name Accession Description Interval E-value
Exostosin pfam03016
Exostosin family; The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on ...
 320-606 3.10e-72

Exostosin family; The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear.


Pssm-ID: 397245  Cd Length: 290  Bit Score: 235.01  E-value: 3.10e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   320 MEKILKVYAY----KEGNKPIMHSPILRGIYASEGWFMNIIESNNNKFVTKDPAKAHLFYLPFSSrmlevTLYVQDSHSH 395
Cdd:pfam03016   1 SCKGLKVYVYdlppRFNEDLLQPCRSLTGWYSAEQFLLESILHSRIECRTSDPDEADCFFVPFYA-----SLDASRHLLN 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   396 RNLIKYLKDYIDFISAKYPFWNRTSGADHFLAACHD-WAP-SETRKHMAKSI--RALCNSDVKEGFVFGKDTSLPETFVR 471
Cdd:pfam03016  76 SALTDLFRELLDWLKSQYPYWNRSGGRDHFIVSGHPaWSFrRTAPDVDWGRAmlLNLTVLFSEDQFRPGKDVALPYPTPF 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   472 DPKkPLSNMGGKSANQRPILAFFAGKP---DHGYLRPILLSYWGNNKDPDLKIFgkLPRTKGNKNYLQFMKTSKYCICAK 548
Cdd:pfam03016 156 HPD-IGQWQDISPSNRRKTLLFFAGNRrrgYSGKIRPLLLEECKGNPDADICGG--LQCTPGRDKYMELLRSSRFCLQPP 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15239502   549 GFEVNSPRVVEAIFYDCVPVIISDNFVPPFFEVLNWESFAIFIPEKDIPNLKKILMSI 606
Cdd:pfam03016 233 GDTPTSPRLFDALLAGCIPVIISDGWELPFADVIDWRKFSVFVPENDIPELKSILRSL 290
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 3-230 3.39e-08

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 56.93  E-value: 3.39e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502      3 RESPWLWKVESRRLLWLLGLtfaLIV--TFQYIELPYAISSIFS--STKIPISRNSTSLIGNSTSAIAPSPAGDEEEVEV 78
Cdd:TIGR00927   12 RRLLRPKRLHWSRLLFLLGM---LIIgsTYQHLRRPQGLPSLWAavSSQQPIKLASRDLSNDEMMMVSSDPPKSSSEMEG 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502     79 DQI--YDSSG-NATAPAISPTTATLPP-----LLPILKENATAPTANAKAPglnpslVKDHaTAPSPSANPPAALPGLNP 150
Cdd:TIGR00927   89 EMLapQATVGrDEATPSIAMENTPSPPrrtakITPTTPKNNYSPTAAGTER------VKED-TPATPSRALNHYISTSGR 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502    151 SLVKENATAPAPSVKS--------PVALPILNPSTVKENATAPVASAKAPVAlPSINPSPVMKNETLPTTSKVPERNPTK 222
Cdd:TIGR00927  162 QRVKSYTPKPRGEVKSssptqtreKVRKYTPSPLGRMVNSYAPSTFMTMPRS-HGITPRTTVKDSEITATYKMLETNPSK 240


                   ....*...
gi 15239502    223 KNVGDASP 230
Cdd:TIGR00927  241 RTAGKTTP 248
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 49-228 4.66e-07

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 53.38  E-value: 4.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502    49 PISRNSTSliGNSTSAIAPSPAGDEEEVEVDQIYDSSGNATAP---AISPTTATLPPllpilKENATAPTANAKAPGLNP 125
Cdd:pfam05109 476 PTPAGTTS--GASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPtpnATSPTPAVTTP-----TPNATSPTLGKTSPTSAV 548

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   126 SLVKDHATAPSPSANPPAAlpglNPSLVKENATAPAPSVKSPVAlpilnpstvkeNATAPVASAKAPVALPSinpspvmk 205
Cdd:pfam05109 549 TTPTPNATSPTPAVTTPTP----NATIPTLGKTSPTSAVTTPTP-----------NATSPTVGETSPQANTT-------- 605

                         170       180
                  ....*....|....*....|...
gi 15239502   206 NETLPTTSKVPERNPTKKNVGDA 228
Cdd:pfam05109 606 NHTLGGTSSTPVVTSPPKNATSA 628
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 23-231 6.43e-07

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 52.27  E-value: 6.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502    23 TFALIVTFQYIELPYAISSIFSSTKIPISRNSTSLIGNSTSAIAPSPAgdeeevEVDQIYDSSGNATAPAISPTTATLPP 102
Cdd:pfam17823 182 TTAASSTTAASSAPTTAASSAPATLTPARGISTAATATGHPAAGTALA------AVGNSSPAAGTVTAAVGTVTPAALAT 255

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   103 LlpilkeNATAPTANAKAPGLNPSlvKDHATAPSPSANPPAALPGLNPsLVKENATAPAPSVKSPVALPILNpstvkeNA 182
Cdd:pfam17823 256 L------AAAAGTVASAAGTINMG--DPHARRLSPAKHMPSDTMARNP-AAPMGAQAQGPIIQVSTDQPVHN------TA 320

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 15239502   183 TAPVASAKAPVALPSINPSPVMKNETLPTTSKVPERNPTkknvgdASPI 231
Cdd:pfam17823 321 GEPTPSPSNTTLEPNTPKSVASTNLAVVTTTKAQAKEPS------ASPV 363
PHA03247 PHA03247
large tegument protein UL36; Provisional
 44-236 6.91e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.02  E-value: 6.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502    44 SSTKIPISRNSTSLIGNSTSAIAPSPAGDEEEVEVDQIYDSSGNATAPAISPTTATLPPLLPILKENATAPTANA--KAP 121
Cdd:PHA03247 2678 SPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGgpARP 2757

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   122 GLNPSLVKDHATAP--SPSANPPAALP-GLNPSLVKENATAPAPSVKSPVALPILNPSTVKENATAPVA-----SAKAPV 193
Cdd:PHA03247 2758 ARPPTTAGPPAPAPpaAPAAGPPRRLTrPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGplpppTSAQPT 2837

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15239502   194 AlPSINPSPVMKNETL--------PTTSKVPERNPTKKNVGDASPIVRFVP 236
Cdd:PHA03247 2838 A-PPPPPGPPPPSLPLggsvapggDVRRRPPSRSPAAKPAAPARPPVRRLA 2887
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 89-230 1.54e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 51.46  E-value: 1.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502    89 TAPAISPTTATLPPLLPILKENATAPTaNAKAPG-LNPSLVKDHATAPSPSANPPAALPGLNPSLVKENAT-APAPSVKS 166
Cdd:pfam05109 430 TSPTLNTTGFAAPNTTTGLPSSTHVPT-NLTAPAsTGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTeSKAPDMTS 508

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   167 P---VALPILNPSTVKENATAPVASAKAP----------VALPSIN---PSPVMK----NETLPTTSK--------VPER 218
Cdd:pfam05109 509 PtsaVTTPTPNATSPTPAVTTPTPNATSPtlgktsptsaVTTPTPNatsPTPAVTtptpNATIPTLGKtsptsavtTPTP 588

                         170
                  ....*....|..
gi 15239502   219 NPTKKNVGDASP 230
Cdd:pfam05109 589 NATSPTVGETSP 600
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 33-237 1.04e-05

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 47.55  E-value: 1.04e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   33 IELPYAISSIFSSTKIPISRNSTSLIGNSTSAIAPSPAGD---EEEV---------EVDQIYDSSGNATAPAISPTTATL 100
Cdd:PHA02682   1 MDLRRRFAEDLAKTKLVLADTSSSLFTKCPQATIPAPAAPcppDADVdpldkysvkEAGRYYQSRLKANSACMQRPSGQS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502  101 PpllpilkenaTAPTANAKAPglnpslvkdhATApSPSANPPAALPGLnpslvkenaTAPAPSVKSPVAL------PILN 174
Cdd:PHA02682  81 P----------LAPSPACAAP----------APA-CPACAPAAPAPAV---------TCPAPAPACPPATaptcppPAVC 130

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502  175 PSTVKENATAPVASAKAPVA--LPSINPSPVMK----NETLPTTSKVPERNPTKKNVGDASPIVR-FVPD 237
Cdd:PHA02682 131 PAPARPAPACPPSTRQCPPAppLPTPKPAPAAKpiflHNQLPPPDYPAASCPTIETAPAASPVLEpRIPD 200
PHA03379 PHA03379
EBNA-3A; Provisional
 67-305 3.39e-05

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 47.36  E-value: 3.39e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   67 PSPAGDEEEVEVDQIYDssgnaTAPAISPTTATLPPllPIlkeNATAPTANAKAPGLNPSLVKDHATAPSPSANPPAALP 146
Cdd:PHA03379 416 PRPPVEKPRPEVPQSLE-----TATSHGSAQVPEPP--PV---HDLEPGPLHDQHSMAPCPVAQLPPGPLQDLEPGDQLP 485

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502  147 GlnPSLVKENATAPAPSVKSPVALPI-LNPSTVKENATAPVASAKAPVAlPSINPSPVMKNETLPTTSKVPERNPtkknv 225
Cdd:PHA03379 486 G--VVQDGRPACAPVPAPAGPIVRPWeASLSQVPGVAFAPVMPQPMPVE-PVPVPTVALERPVCPAPPLIAMQGP----- 557

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502  226 GDASPIVRfvpdVKENAKMPGFG---VMSISEMSKQLRQNRISHNRLAKK-PKWVTKPDLELLQAKYDIENAPIDDKDPF 301
Cdd:PHA03379 558 GETSGIVR----VRERWRPAPWTpnpPRSPSQMSVRDRLARLRAEAQPYQaSVEVQPPQLTQVSPQQPMEYPLEPEQQMF 633


                 ....
gi 15239502  302 LYAP 305
Cdd:PHA03379 634 PGSP 637
PHA03378 PHA03378
EBNA-3B; Provisional
 67-233 5.70e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 46.60  E-value: 5.70e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   67 PSPAGDEEEVevdQIYDSSGNATAPAISPTTATLPPLLPILKENATAPTANAKAPGLNPSLVKDHATAPSPsANPPAALP 146
Cdd:PHA03378 676 PSPTGANTML---PIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGR-ARPPAAAP 751

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502  147 GLNPSLVKENATAPAPSVKSPVALPILNPStvkenatAPVASAKAPVALPSINPSPvmknETLPTTSKVPERNPTKKNvG 226
Cdd:PHA03378 752 GRARPPAAAPGRARPPAAAPGAPTPQPPPQ-------APPAPQQRPRGAPTPQPPP----QAGPTSMQLMPRAAPGQQ-G 819


                 ....*..
gi 15239502  227 DASPIVR 233
Cdd:PHA03378 820 PTKQILR 826
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
85-203 9.51e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 45.64  E-value: 9.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   85 SGNATAPAISPTTATLPPLlpilkenATAPTANAKAPGLNPSLVKDHATAPSPSANPP-AALPGLNPSL-VKENATAPAP 162
Cdd:PRK12323 448 PAPAPAPAAAPAAAARPAA-------AGPRPVAAAAAAAPARAAPAAAPAPADDDPPPwEELPPEFASPaPAQPDAAPAG 520

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 15239502  163 SVKSPVALPILNPSTvKENATAPVASAKAPVALPSINPSPV 203
Cdd:PRK12323 521 WVAESIPDPATADPD-DAFETLAPAPAAAPAPRAAAATEPV 560
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 85-196 1.58e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.71  E-value: 1.58e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   85 SGNATAPAISPTTATLPPllpilkenatAPTANAKAPGLNPSLVKDHATAPSPSANPPAALPGLNPSlvkenATAPAPSV 164
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARP----------EAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPP-----APVAAPAA 431

                         90       100       110
                 ....*....|....*....|....*....|..
gi 15239502  165 KSPVALPILNPSTVKENATAPVASAKAPVALP 196
Cdd:PRK14951 432 AAPAAAPAAAPAAVALAPAPPAQAAPETVAIP 463
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 88-196 2.19e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.32  E-value: 2.19e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   88 ATAPAISPTTATLPPLLPILKENATAPTANAKAPGLNPslvkdhATAPSPSANPPAALPGLNPSLVKENATAPAPSVKSP 167
Cdd:PRK14951 386 AAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPP------APVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPET 459

                         90       100       110
                 ....*....|....*....|....*....|
gi 15239502  168 VALPI-LNPSTVKENATAPVASAKAPVALP 196
Cdd:PRK14951 460 VAIPVrVAPEPAVASAAPAPAAAPAAARLT 489
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
66-230 2.42e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.48  E-value: 2.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   66 APSPAGDEEEVEVDQIYDSSGNATAPAISPTTATLP-----PLLPILKENATAPTANAKAPGLNPSLVKDHATAPSPSAN 140
Cdd:PRK12323 384 QPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVaaapaRRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAAR 463

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502  141 PPAALPGLNPslvkeNATAPAPSVKSPVALPILNPSTVKENATAPVASAKAPVALPSINPSPVMKNETL-PTTSKVPERN 219
Cdd:PRK12323 464 PAAAGPRPVA-----AAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPdPATADPDDAF 538

                        170
                 ....*....|.
gi 15239502  220 PTKKNVGDASP 230
Cdd:PRK12323 539 ETLAPAPAAAP 549
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 55-234 9.42e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 42.22  E-value: 9.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   55 TSLIGNSTSAIAPSPAgdeeevEVDqiydssgnATAPAISPTTATLPPLLPILKENATAPTANAKAPGLNPSLVKDH--- 131
Cdd:PLN03209 384 TSPIPTPPSSSPASSK------SVD--------AVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDlkp 449

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502  132 ATAPSPSANPPAALPGLNPSLV-KENATAPAPSVKSPVALPILNPSTVKENA--------TAPVASAKAPVALPSINPSP 202
Cdd:PLN03209 450 PTSPSPTAPTGVSPSVSSTSSVpAVPDTAPATAATDAAAPPPANMRPLSPYAvyddlkppTSPSPAAPVGKVAPSSTNEV 529

                        170       180       190
                 ....*....|....*....|....*....|..
gi 15239502  203 VMKNETLPTTSKVPERNPTKKNVGDASPIVRF 234
Cdd:PLN03209 530 VKVGNSAPPTALADEQHHAQPKPRPLSPYTMY 561
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
85-245 1.26e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.79  E-value: 1.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   85 SGNATAPAiSPTTATLPPLLPILKENATAPTANAKAPGLNPSLVKDHATAPSPSANPPAALPGLNPSLVKENATAPAP-S 163
Cdd:PRK12323 368 SGGGAGPA-TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPgG 446

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502  164 VKSPVALPilnpstvkenATAPVASAKAPVALPSINPSPVMKNETLPTTSKVPERNPTKKNVGDASPIVRFVPDVKENAK 243
Cdd:PRK12323 447 APAPAPAP----------AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDA 516


                 ..
gi 15239502  244 MP 245
Cdd:PRK12323 517 AP 518
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
60-194 1.36e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.76  E-value: 1.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   60 NSTSAIAPSPAGDEEEVevdqiyDSSGNATAPAISPTTATLPPllpilkenATAPTANAKAPGLNPSLvkdhATAPSPSA 139
Cdd:PRK07003 423 AEAPPAAPAPPATADRG------DDAADGDAPVPAKANARASA--------DSRCDERDAQPPADSGS----ASAPASDA 484

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 15239502  140 NPPAALPGLNPSLVKENATAPAPSVKSPVALPILNPSTVKENATAPVASAKAPVA 194
Cdd:PRK07003 485 PPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAA 539
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 66-226 1.49e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 41.47  E-value: 1.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   66 APSPAGDEEEVEVDQIYDSSGNATAPAISPTTATLPPllpilkENATAPTANAKAPGLNPSLVKDHATAPSPSANPPAAL 145
Cdd:PTZ00436 193 AAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAP------AKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAK 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502  146 PGLNPSlvkENATAPAPSVKSP---VALPILNPSTVKENATAPVASAKAP---VALPSINPSPVMKNETLPTTSKVPERN 219
Cdd:PTZ00436 267 AAAPPA---KAAAPPAKAAAPPakaAAPPAKAAAAPAKAAAAPAKAAAAPakaAAPPAKAAAPPAKAATPPAKAAAPPAK 343


                 ....*..
gi 15239502  220 PTKKNVG 226
Cdd:PTZ00436 344 AAAAPVG 350
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
94-223 1.56e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 41.68  E-value: 1.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   94 SPTTATLPPLLPILKENATAPTANAKApglNPSLVKDHA-TAPSPSANPPAALPGLNPSLVKENATAPAPSVKSPVALPI 172
Cdd:PRK14971 370 SGGRGPKQHIKPVFTQPAAAPQPSAAA---AASPSPSQSsAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQA 446

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15239502  173 LNPSTVKENATAPVaSAKAPVALPSINPspvMKNETLPTTSKVPE-RNPTKK 223
Cdd:PRK14971 447 VRPAQFKEEKKIPV-SKVSSLGPSTLRP---IQEKAEQATGNIKEaPTGTQK 494
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 103-210 1.94e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 41.24  E-value: 1.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502  103 LLPILkenATAPTANAKAPGLNPSlvkdhATAPSPSANPPAALPGLNPSLVKENATAPAPSVKSPVALPilnpsTVKENA 182
Cdd:PRK14951 358 LLRLL---AFKPAAAAEAAAPAEK-----KTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPP-----AAAPPA 424

                         90       100
                 ....*....|....*....|....*...
gi 15239502  183 TAPVASAKAPVALPSINPSPVMKNETLP 210
Cdd:PRK14951 425 PVAAPAAAAPAAAPAAAPAAVALAPAPP 452
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
84-230 2.17e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.37  E-value: 2.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   84 SSGNATAPAISPTTATLPPLLPILKENATAPTANAKAPGLNPSLVKDHATAPSPSANPPAALPGLNPSLVKENATAPAP- 162
Cdd:PRK07003 366 GAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADg 445

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502  163 --SVKSPVALPILNPSTVKENATAPvASAKAPVALPSINPSPVMKNEtlPTTSKVPERNPTKKNVGDASP 230
Cdd:PRK07003 446 daPVPAKANARASADSRCDERDAQP-PADSGSASAPASDAPPDAAFE--PAPRAAAPSAATPAAVPDARA 512
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
113-236 2.93e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.99  E-value: 2.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502  113 APTANAKAPGLNPSLVKDHATAPSPSANPPAALPGLNPS--LVKENATAPAPSVKSPVALPILNPSTVKE----NATAPV 186
Cdd:PRK07003 361 AVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVtaVTGAAGAALAPKAAAAAAATRAEAPPAAPappaTADRGD 440

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15239502  187 ASAKAPVALPSINPSPVMKNETLPTTSKVPERNPTKKNV--GDASPIVRFVP 236
Cdd:PRK07003 441 DAADGDAPVPAKANARASADSRCDERDAQPPADSGSASApaSDAPPDAAFEP 492
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
59-202 3.00e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.63  E-value: 3.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   59 GNSTSAIAPSPAGDEEEVEVDQIYDSSGNATAPAISPTTATLPPLLPILKENATAPTANAKAPGLNPSLVKDHATAPSPS 138
Cdd:PRK12323 368 SGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGA 447

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15239502  139 ANPPAAlpglnPSLVKENATAPAPSVKSPVALPILNPSTVKENATAPVASAKA-------PVALPSINPSP 202
Cdd:PRK12323 448 PAPAPA-----PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDpppweelPPEFASPAPAQ 513
PRK10672 PRK10672
endolytic peptidoglycan transglycosylase RlpA;
83-194 3.21e-03

endolytic peptidoglycan transglycosylase RlpA;


Pssm-ID: 236733 [Multi-domain]  Cd Length: 361  Bit Score: 40.43  E-value: 3.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   83 DSSGNATAPAISPTTATLPPLLPIlkENATAPTANAKAPGLNPSlvkDHATAPSPsanppaalpgLNPSLVKENATAPAP 162
Cdd:PRK10672 199 DLSGGMGTPSVQPAPAPQGDVLPV--SNSTLKSEDPTGAPVTSS---GFLGAPTT----------LAPGVLEGSEPTPTA 263

                         90       100       110
                 ....*....|....*....|....*....|..
gi 15239502  163 SVKSPVALPIlnpstvkenATAPVASAKAPVA 194
Cdd:PRK10672 264 PSSAPATAPA---------AAAPQAAATSSSA 286
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 66-242 3.92e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 40.29  E-value: 3.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   66 APSPAGDEEEVEVDQIydssgnATAPaISPTTATL---PPLLPIlkenATAPTANAKAPGLNPSLVKDHATAPSPSANPP 142
Cdd:PLN03209 351 APSPPIEEEPPQPKAV------VPRP-LSPYTAYEdlkPPTSPI----PTPPSSSPASSKSVDAVAKPAEPDVVPSPGSA 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502  143 AALPGLNPSLVKENA----------------TAPAPSVKSPVALPILNPSTV-KENATAPVASAKAPVALPSINPSPVMK 205
Cdd:PLN03209 420 SNVPEVEPAQVEAKKtrplspyaryedlkppTSPSPTAPTGVSPSVSSTSSVpAVPDTAPATAATDAAAPPPANMRPLSP 499

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 15239502  206 NETLPTTSKVPERNPTKKNVGDASPIVRFVPDVKENA 242
Cdd:PLN03209 500 YAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSA 536
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 90-194 5.90e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 5.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239502   90 APAISPTTATLPPLLPILkENATAPTANAKAPGLNPSLVKDHATAPSPSANPPAALPGLNPSLVKENATAPAPSVKSPVA 169
Cdd:PRK07764 364 LPSASDDERGLLARLERL-ERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPP 442

                         90       100
                 ....*....|....*....|....*
gi 15239502  170 LPILNPSTVKENATAPVASAKAPVA 194
Cdd:PRK07764 443 SPAGNAPAGGAPSPPPAAAPSAQPA 467
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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