|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
709-992 |
3.03e-16 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 84.16 E-value: 3.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 709 SMIDAYVRCGWLEDAYGLFMESAEKGCDPGAVTISILVNALTNRGKHREA-----EHISRTcleKNIELDTVGYNTLIKA 783
Cdd:PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAfdvlaEMKAET---HPIDPDHITVGALMKA 588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 784 MLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQLDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEA 863
Cdd:PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 864 LSLFSEMQKKGIKPGTPSYNMMVKICATSRLHHEVDELLQAMERNGRCTDLSTYLTLIQVYAESSQFAEAEKTITLVKEK 943
Cdd:PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 15240478 944 GIPLSHSHFSSLLSALVKAGMMEEAERTYCKMSEAGISPD--------SACKRTILK 992
Cdd:PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNlvmcrcitGLCLRRFEK 805
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
185-391 |
7.34e-16 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 83.00 E-value: 7.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 185 RPSVVVYTIVLRLYGQVGKIKMAEETFLEMlevGCE-----PDAVACGTMLCTYARWGRHSAMLTFYKAVQERRILLSTS 259
Cdd:PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEM---KAEthpidPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 260 VYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSV 339
Cdd:PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 15240478 340 KAGDWEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMER 391
Cdd:PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
159-578 |
4.10e-12 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 70.28 E-value: 4.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 159 CVVLKEQRGWRQVrdffSWMKLQLSYRPSVVVYTIVLRLYGQVGKIKMAEETFLEMlevgCEPDAVACGTMLCTYARWGR 238
Cdd:PLN03081 133 CIALKSIRCVKAV----YWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGN 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 239 HSAMLTFYKAVQERRILLSTSVYNFML--SSLQKKSFHGKviDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAF 316
Cdd:PLN03081 205 YREAFALFREMWEDGSDAEPRTFVVMLraSAGLGSARAGQ--QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 317 GEMkslgfvPEE--VTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMERNKI 394
Cdd:PLN03081 283 DGM------PEKttVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 395 PADEVIRGLIIRIYGKLGLFHDAQSMFEETERLNLLadekTYLAMSQVHLNSGNVVKALDVIEMMKTRDIPLSRFAYIVM 474
Cdd:PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 475 LQCYAKIQNVDCAEEAFRALSKTG--LPDASSCNDMLNLYTRLNLGEKAKGFIKQ-------------IMVDQVHFDIEL 539
Cdd:PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHriKPRAMHYACMIELLGREGLLDEAYAMIRRapfkptvnmwaalLTACRIHKNLEL 512
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 15240478 540 YK-TAMRVYC----KEGMVAEAQDLIVKMGREARVKdnRFVQTL 578
Cdd:PLN03081 513 GRlAAEKLYGmgpeKLNNYVVLLNLYNSSGRQAEAA--KVVETL 554
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
303-563 |
2.22e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 65.52 E-value: 2.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 303 YAKQGFKEEALKAFGEMksLGFVPEEV-TYSSVISLSVKAGDWEKAIGLYEDMRSQGivPSNYTCATMLS-LYYKTENYP 380
Cdd:COG2956 18 YLLNGQPDKAIDLLEEA--LELDPETVeAHLALGNLYRRRGEYDRAIRIHQKLLERD--PDRAEALLELAqDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 381 KALSLFADMERNKiPADEVIRGLIIRIYGKLGLFHDAQSMFEETERLNlLADEKTYLAMSQVHLNSGNVVKALDVIEMMK 460
Cdd:COG2956 94 RAEELLEKLLELD-PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG-PENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 461 TRDiPLSRFAYIVMLQCYAKIQNVDCAEEAFRALSKTGLPDASSCNDMLNLYTRLNLGEKAKGFIKQIMvdQVHFDIELY 540
Cdd:COG2956 172 KLD-PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL--ELDPSDDLL 248
|
250 260
....*....|....*....|...
gi 15240478 541 KTAMRVYCKEGMVAEAQDLIVKM 563
Cdd:COG2956 249 LALADLLERKEGLEAALALLERQ 271
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
843-890 |
3.75e-09 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 53.14 E-value: 3.75e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 15240478 843 DEKIYTNMIMHYGKGGKMSEALSLFSEMQKKGIKPGTPSYNMMVKICA 890
Cdd:pfam13041 2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
|
|
| PPR_long |
pfam17177 |
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ... |
240-361 |
9.08e-08 |
|
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.
Pssm-ID: 407303 [Multi-domain] Cd Length: 212 Bit Score: 53.94 E-value: 9.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 240 SAMLTFYKAVQERRILLSTSVYNFML---------SSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKE 310
Cdd:pfam17177 28 TGALALYDAAKAEGVRLAQYHYNVLLylcskaadaTDLKPQLAADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGD 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 15240478 311 EALKAFGEMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVP 361
Cdd:pfam17177 108 LAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVEL 158
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
329-362 |
8.04e-06 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 43.60 E-value: 8.04e-06
10 20 30
....*....|....*....|....*....|....
gi 15240478 329 VTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVPS 362
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
846-877 |
5.45e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 41.29 E-value: 5.45e-05
10 20 30
....*....|....*....|....*....|..
gi 15240478 846 IYTNMIMHYGKGGKMSEALSLFSEMQKKGIKP 877
Cdd:TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
|
| PPR_long |
pfam17177 |
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ... |
340-481 |
2.94e-04 |
|
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.
Pssm-ID: 407303 [Multi-domain] Cd Length: 212 Bit Score: 43.15 E-value: 2.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 340 KAGDWEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYP---------KALSLFADMERNKIPADEVIRGLIIRIYGK 410
Cdd:pfam17177 23 KHADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAADATdlkpqlaadRGFEVFEAMKAQGVSPNEATYTAVARLAAA 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15240478 411 LGLFHDAQSMFEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIEMMKTRDIPLSRFAYIVMLQCYAKI 481
Cdd:pfam17177 103 KGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKA 173
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
785-1018 |
5.04e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.18 E-value: 5.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 785 LEAGKLQCASEIYERMHTSgVPCSIQTYNTMISVYGRGLQLDKAIEIFSNARRSGLYlDEKIYTNMIMHYGKGGKMSEAL 864
Cdd:COG2956 19 LLNGQPDKAIDLLEEALEL-DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD-RAEALLELAQDYLKAGLLDRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 865 SLFSEMQKKGIKpGTPSYNMMVKICATSRLHHE-VDELLQAMERNGRCTDLstYLTLIQVYAESSQFAEAEKTItlvkEK 943
Cdd:COG2956 97 ELLEKLLELDPD-DAEALRLLAEIYEQEGDWEKaIEVLERLLKLGPENAHA--YCELAELYLEQGDYDEAIEAL----EK 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15240478 944 GI---PLSHSHFSSLLSALVKAGMMEEAERTYCKMSEAGISPDSACKRtILKGYMTCGDAEKGILFYEKMIRSSVEDD 1018
Cdd:COG2956 170 ALkldPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPR-LAELYEKLGDPEEALELLRKALELDPSDD 246
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
519-769 |
2.35e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.25 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 519 EKAKGFIKQiMVDQVHFDIELYKTAMRVYCKEGMVAEA----QDLIVKMGREARVKdnrfvQTLAESMHIVNKHDK---- 590
Cdd:COG2956 25 DKAIDLLEE-ALELDPETVEAHLALGNLYRRRGEYDRAirihQKLLERDPDRAEAL-----LELAQDYLKAGLLDRaeel 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 591 HEAVLNVSQLDVMALGLMLNLRLKEGNLNETKAILNLMFKTDLGSSAVNRVISS-FVREGDVSKAEMIADIIIRLGLRME 669
Cdd:COG2956 99 LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAElYLEQGDYDEAIEALEKALKLDPDCA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 670 EETIAtLIAVYGRQHKLKEAKRLYLAAGESKTPGKSVIRSMIDAYVRCGWLEDAYGLFMESAEKgcDPGAVTISILVNAL 749
Cdd:COG2956 179 RALLL-LAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALEL--DPSDDLLLALADLL 255
|
250 260
....*....|....*....|
gi 15240478 750 TNRGKHREAEHISRTCLEKN 769
Cdd:COG2956 256 ERKEGLEAALALLERQLRRH 275
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
340-431 |
5.09e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.79 E-value: 5.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 340 KAGDWEKAIGLYEdmRSQGIVPSNYTCATMLS-LYYKTENYPKALSLFADMERNKiPADEVIRGLIIRIYGKLGLFHDAQ 418
Cdd:COG5010 66 KLGDFEESLALLE--QALQLDPNNPELYYNLAlLYSRSGDKDEAKEYYEKALALS-PDNPNAYSNLAALLLSLGQDDEAK 142
|
90
....*....|...
gi 15240478 419 SMFEETERLNLLA 431
Cdd:COG5010 143 AALQRALGTSPLK 155
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
709-992 |
3.03e-16 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 84.16 E-value: 3.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 709 SMIDAYVRCGWLEDAYGLFMESAEKGCDPGAVTISILVNALTNRGKHREA-----EHISRTcleKNIELDTVGYNTLIKA 783
Cdd:PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAfdvlaEMKAET---HPIDPDHITVGALMKA 588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 784 MLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQLDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEA 863
Cdd:PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 864 LSLFSEMQKKGIKPGTPSYNMMVKICATSRLHHEVDELLQAMERNGRCTDLSTYLTLIQVYAESSQFAEAEKTITLVKEK 943
Cdd:PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 15240478 944 GIPLSHSHFSSLLSALVKAGMMEEAERTYCKMSEAGISPD--------SACKRTILK 992
Cdd:PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNlvmcrcitGLCLRRFEK 805
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
185-391 |
7.34e-16 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 83.00 E-value: 7.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 185 RPSVVVYTIVLRLYGQVGKIKMAEETFLEMlevGCE-----PDAVACGTMLCTYARWGRHSAMLTFYKAVQERRILLSTS 259
Cdd:PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEM---KAEthpidPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 260 VYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSV 339
Cdd:PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 15240478 340 KAGDWEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMER 391
Cdd:PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
616-945 |
6.54e-14 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 76.06 E-value: 6.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 616 GNLNETKAILNLMFKTdlGSSAVNRVISSFVRE----GDVSKAEMIADIIIRLGLRMEEETIATLIAVYGRQHKLKEAKR 691
Cdd:PLN03081 203 GNYREAFALFREMWED--GSDAEPRTFVVMLRAsaglGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 692 LYlaageSKTPGKSVI--RSMIDAYVRCGWLEDAYGLFMESAEKGCDPGAVTISILVNALTNRGKHREAEHISRTCLEKN 769
Cdd:PLN03081 281 VF-----DGMPEKTTVawNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 770 IELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSgvpcSIQTYNTMISVYGRGLQLDKAIEIF----------------- 832
Cdd:PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFermiaegvapnhvtfla 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 833 --SNARRSGLyLDE--KIYTNM---------IMHY-------GKGGKMSEALSLFSEmqkkgiKPGTPSYNMMVKICATS 892
Cdd:PLN03081 432 vlSACRYSGL-SEQgwEIFQSMsenhrikprAMHYacmiellGREGLLDEAYAMIRR------APFKPTVNMWAALLTAC 504
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 15240478 893 RLHHE------VDELLQAMERNgrctDLSTYLTLIQVYAESSQFAEAEKTITLVKEKGI 945
Cdd:PLN03081 505 RIHKNlelgrlAAEKLYGMGPE----KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
202-1002 |
1.48e-13 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 75.27 E-value: 1.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 202 GKIKMAEETFLEMLEVGCEPDAvACGTMLCTYARWGR-HSAMLTFYKAVQERRILLSTSVYNFMLSSLQKksfHGKVIDL 280
Cdd:PLN03077 65 GQLEQALKLLESMQELRVPVDE-DAYVALFRLCEWKRaVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR---FGELVHA 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 281 WL---EMVEEGVppneFTYTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSV----------------------- 334
Cdd:PLN03077 141 WYvfgKMPERDL----FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVlrtcggipdlargrevhahvvrf 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 335 ------------ISLSVKAGDWEKAIGLYEDMRSQGIVPSNytcaTMLSLYYKTENYPKALSLFADMERNKIPADEVIRG 402
Cdd:PLN03077 217 gfeldvdvvnalITMYVKCGDVVSARLVFDRMPRRDCISWN----AMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 403 LIIRIYGKLGLFHDAQSMFEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIEMMKTRDIplsrFAYIVMLQCYAKIQ 482
Cdd:PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA----VSWTAMISGYEKNG 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 483 NVDCAEEAFRALSKTGL-PDA-------SSCNDMLNLYTRLNLGEKA--KGFIKQIMVDQVHFDIelyktamrvYCKEGM 552
Cdd:PLN03077 369 LPDKALETYALMEQDNVsPDEitiasvlSACACLGDLDVGVKLHELAerKGLISYVVVANALIEM---------YSKCKC 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 553 VAEAQDLIVKMGREarvkdnrfvqtlaesmhivnkhdkheavlNVSQLDVMALGLMLNLRLKEGNLnetkailnlMFKTD 632
Cdd:PLN03077 440 IDKALEVFHNIPEK-----------------------------DVISWTSIIAGLRLNNRCFEALI---------FFRQM 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 633 LGSSAVNRV-----ISSFVREGDVSKAEMIADIIIRLGLRMEEetiatliavygrqhklkeakrlYLAagesktpgksvi 707
Cdd:PLN03077 482 LLTLKPNSVtliaaLSACARIGALMCGKEIHAHVLRTGIGFDG----------------------FLP------------ 527
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 708 RSMIDAYVRCGWLEDAYGLFmESAEKgcdpgavtisilvnaltnrgkhreaehisrtcleknielDTVGYNTLIKAMLEA 787
Cdd:PLN03077 528 NALLDLYVRCGRMNYAWNQF-NSHEK---------------------------------------DVVSWNILLTGYVAH 567
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 788 GKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQLDKAIEIFSNARRS-GLYLDEKIYTNMIMHYGKGGKMSEALSL 866
Cdd:PLN03077 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAGKLTEAYNF 647
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 867 FSEMQkkgIKPGTPSYNMMVKICatsRLHHEVD--EL----LQAMERNgrctDLSTYLTLIQVYAESSQFAEAEKTITLV 940
Cdd:PLN03077 648 INKMP---ITPDPAVWGALLNAC---RIHRHVElgELaaqhIFELDPN----SVGYYILLCNLYADAGKWDEVARVRKTM 717
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15240478 941 KEKGIPLSHSHFSSLLSALVKAGMMEEA------------ERTYCKMSEAG--ISPDSACKRT-ILKGYMTCGDAEK 1002
Cdd:PLN03077 718 RENGLTVDPGCSWVEVKGKVHAFLTDDEshpqikeintvlEGFYEKMKASGlaGSESSSMDEIeVSKDDIFCGHSER 794
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
159-578 |
4.10e-12 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 70.28 E-value: 4.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 159 CVVLKEQRGWRQVrdffSWMKLQLSYRPSVVVYTIVLRLYGQVGKIKMAEETFLEMlevgCEPDAVACGTMLCTYARWGR 238
Cdd:PLN03081 133 CIALKSIRCVKAV----YWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGN 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 239 HSAMLTFYKAVQERRILLSTSVYNFML--SSLQKKSFHGKviDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAF 316
Cdd:PLN03081 205 YREAFALFREMWEDGSDAEPRTFVVMLraSAGLGSARAGQ--QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 317 GEMkslgfvPEE--VTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMERNKI 394
Cdd:PLN03081 283 DGM------PEKttVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 395 PADEVIRGLIIRIYGKLGLFHDAQSMFEETERLNLLadekTYLAMSQVHLNSGNVVKALDVIEMMKTRDIPLSRFAYIVM 474
Cdd:PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 475 LQCYAKIQNVDCAEEAFRALSKTG--LPDASSCNDMLNLYTRLNLGEKAKGFIKQ-------------IMVDQVHFDIEL 539
Cdd:PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHriKPRAMHYACMIELLGREGLLDEAYAMIRRapfkptvnmwaalLTACRIHKNLEL 512
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 15240478 540 YK-TAMRVYC----KEGMVAEAQDLIVKMGREARVKdnRFVQTL 578
Cdd:PLN03081 513 GRlAAEKLYGmgpeKLNNYVVLLNLYNSSGRQAEAA--KVVETL 554
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
303-563 |
2.22e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 65.52 E-value: 2.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 303 YAKQGFKEEALKAFGEMksLGFVPEEV-TYSSVISLSVKAGDWEKAIGLYEDMRSQGivPSNYTCATMLS-LYYKTENYP 380
Cdd:COG2956 18 YLLNGQPDKAIDLLEEA--LELDPETVeAHLALGNLYRRRGEYDRAIRIHQKLLERD--PDRAEALLELAqDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 381 KALSLFADMERNKiPADEVIRGLIIRIYGKLGLFHDAQSMFEETERLNlLADEKTYLAMSQVHLNSGNVVKALDVIEMMK 460
Cdd:COG2956 94 RAEELLEKLLELD-PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG-PENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 461 TRDiPLSRFAYIVMLQCYAKIQNVDCAEEAFRALSKTGLPDASSCNDMLNLYTRLNLGEKAKGFIKQIMvdQVHFDIELY 540
Cdd:COG2956 172 KLD-PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL--ELDPSDDLL 248
|
250 260
....*....|....*....|...
gi 15240478 541 KTAMRVYCKEGMVAEAQDLIVKM 563
Cdd:COG2956 249 LALADLLERKEGLEAALALLERQ 271
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
146-394 |
4.59e-10 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 64.13 E-value: 4.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 146 MSSFVAKLSfrdMCVVLKEQRGWRQVrdffswmkLQL----SYRPSVVVYTIVLRLYGQVGKIKMAEETFLEMLEVGCEP 221
Cdd:PLN03218 437 LSTFNMLMS---VCASSQDIDGALRV--------LRLvqeaGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA 505
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 222 DAVACGTMLCTYARWGRHSAMLTFY-----KAVQERRIllstsVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVP--PNEF 294
Cdd:PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYgimrsKNVKPDRV-----VFNALISACGQSGAVDRAFDVLAEMKAETHPidPDHI 580
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 295 T-----------------------------------YTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSV 339
Cdd:PLN03218 581 TvgalmkacanagqvdrakevyqmiheynikgtpevYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 15240478 340 KAGDWEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMERNKI 394
Cdd:PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
172-464 |
9.54e-10 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 62.94 E-value: 9.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 172 RDFFSWMKLQLSY---------------------RPSVVVYTIVLRLYGQVGKIKMAEETFLEMLEVGCEPDAVACGTML 230
Cdd:PLN03077 150 RDLFSWNVLVGGYakagyfdealclyhrmlwagvRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 231 CTYARWGR-HSAMLTFYKAVQERRIllstsVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFK 309
Cdd:PLN03077 230 TMYVKCGDvVSARLVFDRMPRRDCI-----SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 310 EEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVpsnyTCATMLSLYYKTENYPKALSLFADM 389
Cdd:PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV----SWTAMISGYEKNGLPDKALETYALM 380
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15240478 390 ERNKIPADEVIRGLIIRIYGKLGLFHDAQSMFEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIEMMKTRDI 464
Cdd:PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
843-890 |
3.75e-09 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 53.14 E-value: 3.75e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 15240478 843 DEKIYTNMIMHYGKGGKMSEALSLFSEMQKKGIKPGTPSYNMMVKICA 890
Cdd:pfam13041 2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
624-875 |
4.38e-09 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 60.65 E-value: 4.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 624 ILNLMFKTDLGSSAVNRVISSFVREGDVSKAEMIADIIIRLGLRMEEETIATLIAVYGRQHKLKEAKRLYlaageSKTPG 703
Cdd:PLN03081 112 ILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF-----DEMPE 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 704 KSVIR--SMIDAYVRCGWLEDAYGLFMESAEKGCDPGAVTISILVNALTNRGKHREAEHI-------------------- 761
Cdd:PLN03081 187 RNLASwgTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLhccvlktgvvgdtfvscali 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 762 -----------SRTCLEKNIELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQLDKAIE 830
Cdd:PLN03081 267 dmyskcgdiedARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 15240478 831 IFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEALSLFSEMQKKGI 875
Cdd:PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
767-1014 |
8.60e-09 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 59.89 E-value: 8.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 767 EKNIELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQLDKAIEIFSNARRSGLYLDEKI 846
Cdd:PLN03218 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 847 YTNMIMHYGKGGKMSEALSLFSEM--QKKGIKPGTPSYNMMVKICATSrlhHEVD---ELLQAMERNGRCTDLSTYLTLI 921
Cdd:PLN03218 545 FNALISACGQSGAVDRAFDVLAEMkaETHPIDPDHITVGALMKACANA---GQVDrakEVYQMIHEYNIKGTPEVYTIAV 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 922 QVYAESSQFAEAEKTITLVKEKGIPLSHSHFSSLLSALVKAGMMEEAERTYCKMSEAGISPDSACKRTILKGYMTCGDAE 1001
Cdd:PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
|
250
....*....|...
gi 15240478 1002 KGILFYEKmIRSS 1014
Cdd:PLN03218 702 KALELYED-IKSI 713
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
761-820 |
1.44e-08 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 51.98 E-value: 1.44e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 761 ISRTCLEKNIELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYG 820
Cdd:pfam13812 2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIG 61
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
773-821 |
3.78e-08 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 50.44 E-value: 3.78e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 15240478 773 DTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGR 821
Cdd:pfam13041 2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
249-471 |
3.86e-08 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 57.58 E-value: 3.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 249 VQERRILLSTSVYNFMLSSLQKKsfhGKV---IDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGFV 325
Cdd:PLN03218 463 VQEAGLKADCKLYTTLISTCAKS---GKVdamFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 326 PEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQG--IVPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEVIRGL 403
Cdd:PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15240478 404 IIRIYGKLGLFHDAQSMFEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIEMMKTRDIPLSRFAY 471
Cdd:PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
191-462 |
8.93e-08 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 56.42 E-value: 8.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 191 YTIVLRLYGQVGKIKMAEETFLEMLEVGCEPDAVACGTMLCTYARWGR-HSAMLTFYKavQERRILLStsvYNFMLSSLq 269
Cdd:PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRmEDARNVFDR--MPRKNLIS---WNALIAGY- 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 270 kkSFHG---KVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAFGEM-KSLGFVPEEVTYSSVISLSVKAGDWE 345
Cdd:PLN03081 402 --GNHGrgtKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMsENHRIKPRAMHYACMIELLGREGLLD 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 346 KAIGLyedMRSQGIVPSNYTCATMLSlyyktenypkALSLFADMERNKIPADevirgliiRIYGKlglfhdaqsmfeETE 425
Cdd:PLN03081 480 EAYAM---IRRAPFKPTVNMWAALLT----------ACRIHKNLELGRLAAE--------KLYGM------------GPE 526
|
250 260 270
....*....|....*....|....*....|....*..
gi 15240478 426 RLNlladekTYLAMSQVHLNSGNVVKALDVIEMMKTR 462
Cdd:PLN03081 527 KLN------NYVVLLNLYNSSGRQAEAAKVVETLKRK 557
|
|
| PPR_long |
pfam17177 |
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ... |
240-361 |
9.08e-08 |
|
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.
Pssm-ID: 407303 [Multi-domain] Cd Length: 212 Bit Score: 53.94 E-value: 9.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 240 SAMLTFYKAVQERRILLSTSVYNFML---------SSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKE 310
Cdd:pfam17177 28 TGALALYDAAKAEGVRLAQYHYNVLLylcskaadaTDLKPQLAADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGD 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 15240478 311 EALKAFGEMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVP 361
Cdd:pfam17177 108 LAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVEL 158
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
174-354 |
1.06e-07 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 56.01 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 174 FFSWMKLQLsyRPSVVVYTIVLRLYGQVGKIKMAEETFLEMLEVGCEPDAVACGTMLCTYARWGRHSAMLTFYKAvQERR 253
Cdd:PLN03077 477 FFRQMLLTL--KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-HEKD 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 254 IllstSVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAFGEMK-SLGFVPEEVTYS 332
Cdd:PLN03077 554 V----VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEeKYSITPNLKHYA 629
|
170 180
....*....|....*....|..
gi 15240478 333 SVISLSVKAGDWEKAIGLYEDM 354
Cdd:PLN03077 630 CVVDLLGRAGKLTEAYNFINKM 651
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
186-235 |
1.19e-07 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 48.90 E-value: 1.19e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15240478 186 PSVVVYTIVLRLYGQVGKIKMAEETFLEMLEVGCEPDAVACGTMLCTYAR 235
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
677-1015 |
2.30e-07 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 54.88 E-value: 2.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 677 IAVYGRQHKLKEAKRLyLAAGESKTPGKSVIRSMIDAYVRC---GWLEDAYGlFMESAekGCDPGAVTISILVNALTNRG 753
Cdd:PLN03081 97 LVACGRHREALELFEI-LEAGCPFTLPASTYDALVEACIALksiRCVKAVYW-HVESS--GFEPDQYMMNRVLLMHVKCG 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 754 KHREAEHISRTCLEKNIeldtVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMI-------SVYGrGLQLD 826
Cdd:PLN03081 173 MLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLrasaglgSARA-GQQLH 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 827 kaieifSNARRSGLYLDEKIYTNMIMHYGKGGKMSEALSLFSEMQKKGikpgTPSYNMMVkicATSRLH---HEVDELLQ 903
Cdd:PLN03081 248 ------CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT----TVAWNSML---AGYALHgysEEALCLYY 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 904 AMERNGRCTDLSTYLTLIQVYAESSQFAEAEKTITLVKEKGIPLSHSHFSSLLSALVKAGMMEEAERTYCKMSEAGISPD 983
Cdd:PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW 394
|
330 340 350
....*....|....*....|....*....|..
gi 15240478 984 SAckrtILKGYMTCGDAEKGILFYEKMIRSSV 1015
Cdd:PLN03081 395 NA----LIAGYGNHGRGTKAVEMFERMIAEGV 422
|
|
| PPR_long |
pfam17177 |
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ... |
267-390 |
2.97e-07 |
|
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.
Pssm-ID: 407303 [Multi-domain] Cd Length: 212 Bit Score: 52.40 E-value: 2.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 267 SLQKKSFHGKV---IDLWLEMVEEGVPPNEFTYTLVV-----SSYAKQGFKEEALKA----FGEMKSLGFVPEEVTYSSV 334
Cdd:pfam17177 17 QLDKCSKHADAtgaLALYDAAKAEGVRLAQYHYNVLLylcskAADATDLKPQLAADRgfevFEAMKAQGVSPNEATYTAV 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 15240478 335 ISLSVKAGDWEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADME 390
Cdd:pfam17177 97 ARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHML 152
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
245-464 |
2.99e-07 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 54.88 E-value: 2.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 245 FYKAVQERR-----------ILLST-SVYNFMLSSLQkksfHGKVIDLWLE---MVEE-GVPPNEFTYTLVVSSYAKQGF 308
Cdd:PLN03218 412 FFKACKKQRavkeafrfaklIRNPTlSTFNMLMSVCA----SSQDIDGALRvlrLVQEaGLKADCKLYTTLISTCAKSGK 487
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 309 KEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFAD 388
Cdd:PLN03218 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAE 567
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15240478 389 M--ERNKIPADEVIRGLIIRIYGKLGLFHDAQSMFEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIEMMKTRDI 464
Cdd:PLN03218 568 MkaETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
291-336 |
4.09e-07 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 47.36 E-value: 4.09e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 15240478 291 PNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVIS 336
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILIN 46
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
326-371 |
4.55e-07 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 47.36 E-value: 4.55e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 15240478 326 PEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVPSNYTCATMLS 371
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILIN 46
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
808-1026 |
5.59e-07 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 53.73 E-value: 5.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 808 SIQTYNTMISVYGRGLQLDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEALSLFSEMQKKGIKPGTPSYNMMVK 887
Cdd:PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 888 ICATSrlhHEVDELLQA---MERNGRCTDLSTYLTLIQVYAESSQFAEAEKTITLVKEKGIPLS--HSHFSSLLSALVKA 962
Cdd:PLN03218 516 GCARA---GQVAKAFGAygiMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDpdHITVGALMKACANA 592
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15240478 963 GMMEEAERTYCKMSEAGISPDSACKRTILKGYMTCGDAEKGILFYEKMIRSSVE-DDRFVSSVVE 1026
Cdd:PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKpDEVFFSALVD 657
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
771-1025 |
8.41e-07 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 53.31 E-value: 8.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 771 ELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQLDKAIEIFSNARRSGLYLDEKIYTNM 850
Cdd:PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 851 IMHYGKGGKMSEALSLFSEMQKKGIKpgtpSYNMMVKICATSRLHHEVDELLQAM------------------------E 906
Cdd:PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFENGECLEGLELFFTMrelsvdpdlmtitsvisacellgdE 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 907 RNGR-----------CTDLSTYLTLIQVYAESSQFAEAEKTITLVKEKGIplshSHFSSLLSALVKAGMMEEAERTYCKM 975
Cdd:PLN03077 305 RLGRemhgyvvktgfAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA----VSWTAMISGYEKNGLPDKALETYALM 380
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 15240478 976 SEAGISPDSACKRTILKGYMTCGDAEKGILFYEKMIRSsveddRFVSSVV 1025
Cdd:PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-----GLISYVV 425
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
662-1012 |
2.43e-06 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 51.79 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 662 IRLGLRMEEETIATLIAVYGRQHKLKEAKRLYLAAGESK-TPGKSVIRSMIDAYVRCGWLEDAYGLFMESAEKGcdpgAV 740
Cdd:PLN03081 115 AGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGfEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN----LA 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 741 TISILVNALTNRGKHREAEHISRTCLEKNIELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYG 820
Cdd:PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 821 RGLQLDKAIEIFSNARRSGLYldekIYTNMIMHYGKGGKMSEALSLFSEMQKKGIKPGTPSYNMMVKICATSRLHHEVDE 900
Cdd:PLN03081 271 KCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 901 LLQAMERNGRCTDLSTYLTLIQVYAESSQFAEAEKTITLVKEKGIplshshfsSLLSALVKA----GMMEEAERTYCKMS 976
Cdd:PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL--------ISWNALIAGygnhGRGTKAVEMFERMI 418
|
330 340 350
....*....|....*....|....*....|....*.
gi 15240478 977 EAGISPDSACKRTILKGYMTCGDAEKGILFYEKMIR 1012
Cdd:PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
190-372 |
3.94e-06 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 51.03 E-value: 3.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 190 VYTIVLRLYGQVGKIKMAEETFLEMLEVGCEPDAVACGTMLCTYARWGRHSAMLTFYKAVQERRILLSTSVYnfmlSSLQ 269
Cdd:PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY----SSLM 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 270 KKSFHGKVIDLWLEMVEE----GVPPNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGDWE 345
Cdd:PLN03218 692 GACSNAKNWKKALELYEDiksiKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
|
170 180
....*....|....*....|....*..
gi 15240478 346 KAIGLYEDMRSQGIVPSNYTCATMLSL 372
Cdd:PLN03218 772 VGLDLLSQAKEDGIKPNLVMCRCITGL 798
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
303-532 |
4.76e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 49.34 E-value: 4.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 303 YAKQGFKEEALKAFgeMKSLGFVPEEVT-YSSVISLSVKAGDWEKAIGLYEDMRSQGIVPSNYTCAtMLSLYYKTENYPK 381
Cdd:COG2956 86 YLKAGLLDRAEELL--EKLLELDPDDAEaLRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE-LAELYLEQGDYDE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 382 ALSLFadmernkipaDEVIRgliiriygklglfHDAQSMfeeterlnlladeKTYLAMSQVHLNSGNVVKALDVIEMMKT 461
Cdd:COG2956 163 AIEAL----------EKALK-------------LDPDCA-------------RALLLLAELYLEQGDYEEAIAALERALE 206
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15240478 462 RDiPLSRFAYIVMLQCYAKIQNVDCAEEAFRALSKTGlPDASSCNDMLNLYTRLNLGEKAKGFIKQIMVDQ 532
Cdd:COG2956 207 QD-PDYLPALPRLAELYEKLGDPEEALELLRKALELD-PSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
257-305 |
6.50e-06 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 44.28 E-value: 6.50e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 15240478 257 STSVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAK 305
Cdd:pfam13041 2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
329-362 |
8.04e-06 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 43.60 E-value: 8.04e-06
10 20 30
....*....|....*....|....*....|....
gi 15240478 329 VTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVPS 362
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
846-875 |
1.69e-05 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 42.45 E-value: 1.69e-05
10 20 30
....*....|....*....|....*....|
gi 15240478 846 IYTNMIMHYGKGGKMSEALSLFSEMQKKGI 875
Cdd:pfam01535 2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
283-340 |
2.98e-05 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 42.73 E-value: 2.98e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 15240478 283 EMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSVK 340
Cdd:pfam13812 5 EMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
432-655 |
3.99e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 46.65 E-value: 3.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 432 DEKTYLAMSQVHLNSGNVVKALDVIEmmKTRDIPLSRFAYIVML-QCYAKIQNVDCAEEAFRALSKTGLPDASSCNDMLN 510
Cdd:COG2956 41 TVEAHLALGNLYRRRGEYDRAIRIHQ--KLLERDPDRAEALLELaQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 511 LYTRLNLGEKAKGFIKQ---IMVDQVHFDIELyktaMRVYCKEGMVAEAQDLIvkmgREARVKDNRFVQT---LAESMHI 584
Cdd:COG2956 119 IYEQEGDWEKAIEVLERllkLGPENAHAYCEL----AELYLEQGDYDEAIEAL----EKALKLDPDCARAlllLAELYLE 190
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15240478 585 VNKHDK----HEAVLNVSQLDVMALGLMLNLRLKEGNLNETKAILNLMFKTDLGSSAVNRVISSFVREGDVSKAE 655
Cdd:COG2956 191 QGDYEEaiaaLERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAAL 265
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
185-233 |
4.96e-05 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 41.96 E-value: 4.96e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 15240478 185 RPSVVVYTIVLRLYGQVGKIKMAEETFLEMLEVGCEPDavacgtmLCTY 233
Cdd:pfam13812 12 QLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPT-------LDTY 53
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
846-877 |
5.45e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 41.29 E-value: 5.45e-05
10 20 30
....*....|....*....|....*....|..
gi 15240478 846 IYTNMIMHYGKGGKMSEALSLFSEMQKKGIKP 877
Cdd:TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
372-597 |
6.59e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 45.88 E-value: 6.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 372 LYYKTENYPKALSLFADMERNKiPADEVIRGLIIRIYGKLGLFHDAQSMFEeterlNLLADEKT----YLAMSQVHLNSG 447
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALELD-PETVEAHLALGNLYRRRGEYDRAIRIHQ-----KLLERDPDraeaLLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 448 NVVKALDVIEMMKTRDiPLSRFAYIVMLQCYAKIQNVDCAEEAFRALSKTGLPDASSCNDMLNLYTRLNLGEKAKGFIKQ 527
Cdd:COG2956 91 LLDRAEELLEKLLELD-PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15240478 528 -IMVDQVHfdIELYKTAMRVYCKEGMVAEAQDLIvkmgREARVKDNRFVQTLAESMHIVNKHDKHEAVLNV 597
Cdd:COG2956 170 aLKLDPDC--ARALLLLAELYLEQGDYEEAIAAL----ERALEQDPDYLPALPRLAELYEKLGDPEEALEL 234
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
740-1025 |
7.42e-05 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 46.79 E-value: 7.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 740 VTISILVNALTNRGKHREAEHISRTcLEKN--IELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMIS 817
Cdd:PLN03081 88 VSLCSQIEKLVACGRHREALELFEI-LEAGcpFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 818 VYGRGLQLDKAIEIFSNARRSGLYldekIYTNMIMHYGKGGKMSEALSLFSEMQKKGIKPGTPSYNMMVKICATSRLHHE 897
Cdd:PLN03081 167 MHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 898 VDELLQAMERNGRCTDLSTYLTLIQVYAessqfaeaektitlvkekgiplshshfssllsalvKAGMMEEAERTYCKMSE 977
Cdd:PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYS-----------------------------------KCGDIEDARCVFDGMPE 287
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 15240478 978 AGIspdsACKRTILKGYMTCGDAEKGILFYEKMIRSSVEDDRFVSSVV 1025
Cdd:PLN03081 288 KTT----VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
709-749 |
1.23e-04 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 40.42 E-value: 1.23e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 15240478 709 SMIDAYVRCGWLEDAYGLFMESAEKGCDPGAVTISILVNAL 749
Cdd:pfam13041 8 TLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
189-223 |
1.43e-04 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 39.75 E-value: 1.43e-04
10 20 30
....*....|....*....|....*....|....*
gi 15240478 189 VVYTIVLRLYGQVGKIKMAEETFLEMLEVGCEPDA 223
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
329-359 |
2.46e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 38.99 E-value: 2.46e-04
10 20 30
....*....|....*....|....*....|.
gi 15240478 329 VTYSSVISLSVKAGDWEKAIGLYEDMRSQGI 359
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR_long |
pfam17177 |
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ... |
340-481 |
2.94e-04 |
|
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.
Pssm-ID: 407303 [Multi-domain] Cd Length: 212 Bit Score: 43.15 E-value: 2.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 340 KAGDWEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYP---------KALSLFADMERNKIPADEVIRGLIIRIYGK 410
Cdd:pfam17177 23 KHADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAADATdlkpqlaadRGFEVFEAMKAQGVSPNEATYTAVARLAAA 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15240478 411 LGLFHDAQSMFEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIEMMKTRDIPLSRFAYIVMLQCYAKI 481
Cdd:pfam17177 103 KGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKA 173
|
|
| PPR_long |
pfam17177 |
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ... |
793-882 |
3.50e-04 |
|
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.
Pssm-ID: 407303 [Multi-domain] Cd Length: 212 Bit Score: 43.15 E-value: 3.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 793 ASEIYERMHTSGVPCSIQTYNTMISVYGRG---------LQLDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEA 863
Cdd:pfam17177 30 ALALYDAAKAEGVRLAQYHYNVLLYLCSKAadatdlkpqLAADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLA 109
|
90
....*....|....*....
gi 15240478 864 LSLFSEMQKKGIKPGTPSY 882
Cdd:pfam17177 110 FDLVKEMEAAGVSPRLRSY 128
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
785-1018 |
5.04e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.18 E-value: 5.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 785 LEAGKLQCASEIYERMHTSgVPCSIQTYNTMISVYGRGLQLDKAIEIFSNARRSGLYlDEKIYTNMIMHYGKGGKMSEAL 864
Cdd:COG2956 19 LLNGQPDKAIDLLEEALEL-DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD-RAEALLELAQDYLKAGLLDRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 865 SLFSEMQKKGIKpGTPSYNMMVKICATSRLHHE-VDELLQAMERNGRCTDLstYLTLIQVYAESSQFAEAEKTItlvkEK 943
Cdd:COG2956 97 ELLEKLLELDPD-DAEALRLLAEIYEQEGDWEKaIEVLERLLKLGPENAHA--YCELAELYLEQGDYDEAIEAL----EK 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15240478 944 GI---PLSHSHFSSLLSALVKAGMMEEAERTYCKMSEAGISPDSACKRtILKGYMTCGDAEKGILFYEKMIRSSVEDD 1018
Cdd:COG2956 170 ALkldPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPR-LAELYEKLGDPEEALELLRKALELDPSDD 246
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
831-889 |
5.20e-04 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 39.26 E-value: 5.20e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 15240478 831 IFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEALSLFSEMQKKGIKPGTPSYNMMVKIC 889
Cdd:pfam13812 2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
294-324 |
5.51e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 38.22 E-value: 5.51e-04
10 20 30
....*....|....*....|....*....|.
gi 15240478 294 FTYTLVVSSYAKQGFKEEALKAFGEMKSLGF 324
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR_long |
pfam17177 |
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ... |
283-346 |
8.14e-04 |
|
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.
Pssm-ID: 407303 [Multi-domain] Cd Length: 212 Bit Score: 42.00 E-value: 8.14e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15240478 283 EMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGDWEK 346
Cdd:pfam17177 115 EMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADK 178
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
294-326 |
1.57e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 37.05 E-value: 1.57e-03
10 20 30
....*....|....*....|....*....|...
gi 15240478 294 FTYTLVVSSYAKQGFKEEALKAFGEMKSLGFVP 326
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
287-320 |
1.80e-03 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 36.94 E-value: 1.80e-03
10 20 30
....*....|....*....|....*....|....
gi 15240478 287 EGVPPNEFTYTLVVSSYAKQGFKEEALKAFGEMK 320
Cdd:pfam12854 1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
519-769 |
2.35e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.25 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 519 EKAKGFIKQiMVDQVHFDIELYKTAMRVYCKEGMVAEA----QDLIVKMGREARVKdnrfvQTLAESMHIVNKHDK---- 590
Cdd:COG2956 25 DKAIDLLEE-ALELDPETVEAHLALGNLYRRRGEYDRAirihQKLLERDPDRAEAL-----LELAQDYLKAGLLDRaeel 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 591 HEAVLNVSQLDVMALGLMLNLRLKEGNLNETKAILNLMFKTDLGSSAVNRVISS-FVREGDVSKAEMIADIIIRLGLRME 669
Cdd:COG2956 99 LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAElYLEQGDYDEAIEALEKALKLDPDCA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 670 EETIAtLIAVYGRQHKLKEAKRLYLAAGESKTPGKSVIRSMIDAYVRCGWLEDAYGLFMESAEKgcDPGAVTISILVNAL 749
Cdd:COG2956 179 RALLL-LAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALEL--DPSDDLLLALADLL 255
|
250 260
....*....|....*....|
gi 15240478 750 TNRGKHREAEHISRTCLEKN 769
Cdd:COG2956 256 ERKEGLEAALALLERQLRRH 275
|
|
| PPR_long |
pfam17177 |
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ... |
856-1015 |
2.85e-03 |
|
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.
Pssm-ID: 407303 [Multi-domain] Cd Length: 212 Bit Score: 40.46 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 856 KGGKMSEALSLFSEMQKKGIKPGTPSYNMMVKICATSRLHHE---------VDELLQAMERNGRCTDLSTYLTLIQVYAE 926
Cdd:pfam17177 23 KHADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAADATDlkpqlaadrGFEVFEAMKAQGVSPNEATYTAVARLAAA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 927 SSQFAEAEKTITLVKEKGIPLSHSHFSSLLSALVKAGMMEEAERTYCKMSEAGISPDSACKRTILKGYMTCGDAEKgilF 1006
Cdd:pfam17177 103 KGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADK---V 179
|
170
....*....|.
gi 15240478 1007 YEKM--IRSSV 1015
Cdd:pfam17177 180 YAYLhrLRDAV 190
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
958-994 |
3.13e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 36.57 E-value: 3.13e-03
10 20 30
....*....|....*....|....*....|....*..
gi 15240478 958 ALVKAGMMEEAERTYCKMSEAGISPDSACKRTILKGY 994
Cdd:pfam13041 12 GYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
811-844 |
3.89e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 35.89 E-value: 3.89e-03
10 20 30
....*....|....*....|....*....|....
gi 15240478 811 TYNTMISVYGRGLQLDKAIEIFSNARRSGLYLDE 844
Cdd:TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
768-800 |
4.63e-03 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 35.78 E-value: 4.63e-03
10 20 30
....*....|....*....|....*....|...
gi 15240478 768 KNIELDTVGYNTLIKAMLEAGKLQCASEIYERM 800
Cdd:pfam12854 1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
340-463 |
4.76e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 38.63 E-value: 4.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 340 KAGDWEKAIGLYEDMRSQgiVPSN-YTCATMLSLYYKTENYPKALSLFAD-MERNkiPADEVIRGLIIRIYGKLGLFHDA 417
Cdd:COG4783 16 LAGDYDEAEALLEKALEL--DPDNpEAFALLGEILLQLGDLDEAIVLLHEaLELD--PDEPEARLNLGLALLKAGDYDEA 91
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 15240478 418 QSMFEETERLNlLADEKTYLAMSQVHLNSGNVVKALDVIEMMKTRD 463
Cdd:COG4783 92 LALLEKALKLD-PEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
340-431 |
5.09e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.79 E-value: 5.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 340 KAGDWEKAIGLYEdmRSQGIVPSNYTCATMLS-LYYKTENYPKALSLFADMERNKiPADEVIRGLIIRIYGKLGLFHDAQ 418
Cdd:COG5010 66 KLGDFEESLALLE--QALQLDPNNPELYYNLAlLYSRSGDKDEAKEYYEKALALS-PDNPNAYSNLAALLLSLGQDDEAK 142
|
90
....*....|...
gi 15240478 419 SMFEETERLNLLA 431
Cdd:COG5010 143 AALQRALGTSPLK 155
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
958-984 |
5.38e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 35.51 E-value: 5.38e-03
10 20
....*....|....*....|....*..
gi 15240478 958 ALVKAGMMEEAERTYCKMSEAGISPDS 984
Cdd:TIGR00756 9 GLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
189-219 |
5.67e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 35.13 E-value: 5.67e-03
10 20 30
....*....|....*....|....*....|.
gi 15240478 189 VVYTIVLRLYGQVGKIKMAEETFLEMLEVGC 219
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
856-1021 |
6.78e-03 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 40.63 E-value: 6.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 856 KGGKMSEALSLFSEMQKKGIkpgtpsYNMM-------VKICATSRLHHEVDELLQAMerngRCTDLSTYLTLIQVYAESS 928
Cdd:PLN03218 382 RDGRIKDCIDLLEDMEKRGL------LDMDkiyhakfFKACKKQRAVKEAFRFAKLI----RNPTLSTFNMLMSVCASSQ 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240478 929 QFAEAEKTITLVKEKGIPLSHSHFSSLLSALVKAGMMEEAERTYCKMSEAGISPDSACKRTILKGYMTCGDAEKGILFYE 1008
Cdd:PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531
|
170
....*....|...
gi 15240478 1009 KMIRSSVEDDRFV 1021
Cdd:PLN03218 532 IMRSKNVKPDRVV 544
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
350-410 |
7.20e-03 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 36.18 E-value: 7.20e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15240478 350 LYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEVIRGLIIRIYGK 410
Cdd:pfam13812 2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
811-840 |
7.62e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 35.13 E-value: 7.62e-03
10 20 30
....*....|....*....|....*....|
gi 15240478 811 TYNTMISVYGRGLQLDKAIEIFSNARRSGL 840
Cdd:pfam01535 2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| |
