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Conserved domains on  [gi|15240479|ref|NP_198080|]
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Zim17-type zinc finger protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-DNL super family cl07859
DNL zinc finger; The domain is named after a short C-terminal motif of D(N/H)L. This domain is ...
 123-168 5.07e-20

DNL zinc finger; The domain is named after a short C-terminal motif of D(N/H)L. This domain is a novel zinc-finger protein essential for protein import into mitochondria.


The actual alignment was detected with superfamily member pfam05180:

Pssm-ID: 461571  Cd Length: 64  Bit Score: 79.92  E-value: 5.07e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15240479   123 VAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLF 168
Cdd:pfam05180   2 LTFTCKVCNTRSTKTFSKQAYHKGVVIIQCPGCKNRHLIADNLGWF 47
 
Name Accession Description Interval E-value
zf-DNL pfam05180
DNL zinc finger; The domain is named after a short C-terminal motif of D(N/H)L. This domain is ...
 123-168 5.07e-20

DNL zinc finger; The domain is named after a short C-terminal motif of D(N/H)L. This domain is a novel zinc-finger protein essential for protein import into mitochondria.


Pssm-ID: 461571  Cd Length: 64  Bit Score: 79.92  E-value: 5.07e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15240479   123 VAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLF 168
Cdd:pfam05180   2 LTFTCKVCNTRSTKTFSKQAYHKGVVIIQCPGCKNRHLIADNLGWF 47
 
Name Accession Description Interval E-value
zf-DNL pfam05180
DNL zinc finger; The domain is named after a short C-terminal motif of D(N/H)L. This domain is ...
 123-168 5.07e-20

DNL zinc finger; The domain is named after a short C-terminal motif of D(N/H)L. This domain is a novel zinc-finger protein essential for protein import into mitochondria.


Pssm-ID: 461571  Cd Length: 64  Bit Score: 79.92  E-value: 5.07e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15240479   123 VAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLF 168
Cdd:pfam05180   2 LTFTCKVCNTRSTKTFSKQAYHKGVVIIQCPGCKNRHLIADNLGWF 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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