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Conserved domains on  [gi|42568204|ref|NP_198813|]
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catalytics [Arabidopsis thaliana]

Protein Classification

PQQ-dependent sugar dehydrogenase( domain architecture ID 11450313)

PQQ-dependent sugar dehydrogenase such as Escherichia coli aldose sugar dehydrogenase YliI, which has broad substrate specificity but higher activity with oligomeric sugars and can oxidize glucose to gluconolactone, and to Gluconacetobacter liquefaciens L-sorbosone dehydrogenase, which converts L-sorbosone into 2-keto-L-gulonic acid

EC:  1.1.5.-
Gene Ontology:  GO:0016901|GO:0070968
SCOP:  4002708

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
YliI COG2133
Glucose/arabinose dehydrogenase, beta-propeller fold [Carbohydrate transport and metabolism];
195-574 1.18e-64

Glucose/arabinose dehydrogenase, beta-propeller fold [Carbohydrate transport and metabolism];


:

Pssm-ID: 441736 [Multi-domain]  Cd Length: 365  Bit Score: 218.26  E-value: 1.18e-64
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204 195 GPSSPSGICIEKIGNGsyLN----MVPHPDGsnRVFLSDQPGKIYLVTvPAQGSgellkideTNPFLDLTeeVHFDAELG 270
Cdd:COG2133  20 TPTLPPGFTVEVVADG--LDhpwgLAFLPDG--RLLVTERAGRIRLLD-DDGKL--------STPVADLP--VFAGGEGG 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204 271 LLGIAFHPDFLKNGRFFASFncdrvkwpecsgkcacnsdidcdpakldsdngATPCQYHSVISEF-FTNGTYVRPVEVrr 349
Cdd:COG2133  85 LLGVALDPDFATNGYLYVAY--------------------------------TDPGGAGTRVARFtLSDGDTLTSEEV-- 130
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204 350 IFTmGLPFSS--HHGGQILFGPkDGYLYFMMGDGGSKGDPYNFAQNKKSLLGKIMRLDVNNvldakamnefqlwgnySIP 427
Cdd:COG2133 131 ILD-GLPAGGgnHNGGRLAFGP-DGKLYVSVGDRGNACEARGNAQDLNSLRGKILRIDPDG----------------SIP 192
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204 428 KDNPFSQDKNLLPEIWAMGVRNPWRCSFDSErpSYFL-CADVGEDQYEEVDMITKGGNYGWHYYEGTLPFHPSSSSNISN 506
Cdd:COG2133 193 ADNPFVGTPGARPEIYAYGHRNPQGLAFDPE--TGELwATEHGPDGGDELNRIEPGGNYGWPYCEGGQNYDPIGDSTPDA 270
                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 42568204 507 STTKienpifPVMWYnhsdinqqeGSSASITGGYFYRSSTDPCLY-GTYLFADLYAGMI----FGGAETPVGS 574
Cdd:COG2133 271 GLTD------PVATW---------PPGHAPSGLAFYTGDAFPAEYrGGLFVADLGSRRVvrvpLDGDGKVVGE 328
 
Name Accession Description Interval E-value
YliI COG2133
Glucose/arabinose dehydrogenase, beta-propeller fold [Carbohydrate transport and metabolism];
195-574 1.18e-64

Glucose/arabinose dehydrogenase, beta-propeller fold [Carbohydrate transport and metabolism];


Pssm-ID: 441736 [Multi-domain]  Cd Length: 365  Bit Score: 218.26  E-value: 1.18e-64
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204 195 GPSSPSGICIEKIGNGsyLN----MVPHPDGsnRVFLSDQPGKIYLVTvPAQGSgellkideTNPFLDLTeeVHFDAELG 270
Cdd:COG2133  20 TPTLPPGFTVEVVADG--LDhpwgLAFLPDG--RLLVTERAGRIRLLD-DDGKL--------STPVADLP--VFAGGEGG 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204 271 LLGIAFHPDFLKNGRFFASFncdrvkwpecsgkcacnsdidcdpakldsdngATPCQYHSVISEF-FTNGTYVRPVEVrr 349
Cdd:COG2133  85 LLGVALDPDFATNGYLYVAY--------------------------------TDPGGAGTRVARFtLSDGDTLTSEEV-- 130
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204 350 IFTmGLPFSS--HHGGQILFGPkDGYLYFMMGDGGSKGDPYNFAQNKKSLLGKIMRLDVNNvldakamnefqlwgnySIP 427
Cdd:COG2133 131 ILD-GLPAGGgnHNGGRLAFGP-DGKLYVSVGDRGNACEARGNAQDLNSLRGKILRIDPDG----------------SIP 192
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204 428 KDNPFSQDKNLLPEIWAMGVRNPWRCSFDSErpSYFL-CADVGEDQYEEVDMITKGGNYGWHYYEGTLPFHPSSSSNISN 506
Cdd:COG2133 193 ADNPFVGTPGARPEIYAYGHRNPQGLAFDPE--TGELwATEHGPDGGDELNRIEPGGNYGWPYCEGGQNYDPIGDSTPDA 270
                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 42568204 507 STTKienpifPVMWYnhsdinqqeGSSASITGGYFYRSSTDPCLY-GTYLFADLYAGMI----FGGAETPVGS 574
Cdd:COG2133 271 GLTD------PVATW---------PPGHAPSGLAFYTGDAFPAEYrGGLFVADLGSRRVvrvpLDGDGKVVGE 328
GSDH pfam07995
Glucose / Sorbosone dehydrogenase; Members of this family are glucose/sorbosone dehydrogenases ...
215-487 3.13e-27

Glucose / Sorbosone dehydrogenase; Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.


Pssm-ID: 429776 [Multi-domain]  Cd Length: 327  Bit Score: 113.04  E-value: 3.13e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204   215 MVPHPDGsnRVFLSDQPGKIYLVTvpaqGSGELLkidetnPFLDLTEEVHFDAELGLLGIAFHPDFLKNGRFFASFNcdr 294
Cdd:pfam07995   7 LAFLPDG--RMLVTERPGRLRIVD----ADGKLS------TPIAGVPEVAARGQGGLLDVALHPDFAENRWVYLSYA--- 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204   295 vkwpecsgkcacnsdidcdpakLDSDNGATpcqyhSVISEFFTNGTYVRPVEVRRIFTMgLPFSS---HHGGQILFGPkD 371
Cdd:pfam07995  72 ----------------------EAGGGGAG-----TAVARARLSDDGTALEDVEVIFRQ-IPKVSgggHFGSRLVFGP-D 122
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204   372 GYLYFMMGDGGsKGDPynfAQNKKSLLGKIMRLDvnnvLDAkamnefqlwgnySIPKDNPFSQDKNLLPEIWAMGVRNPW 451
Cdd:pfam07995 123 GTLFVTTGDRG-DRDL---AQDLDSHLGKILRLN----PDG------------SIPADNPFVGRPGALPEIWSYGHRNPQ 182
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 42568204   452 RCSFDSER---------PSyflcadvGEDqyeEVDMITKGGNYGW 487
Cdd:pfam07995 183 GLAFDPDTgrlwehehgPR-------GGD---EINLIEAGKNYGW 217
 
Name Accession Description Interval E-value
YliI COG2133
Glucose/arabinose dehydrogenase, beta-propeller fold [Carbohydrate transport and metabolism];
195-574 1.18e-64

Glucose/arabinose dehydrogenase, beta-propeller fold [Carbohydrate transport and metabolism];


Pssm-ID: 441736 [Multi-domain]  Cd Length: 365  Bit Score: 218.26  E-value: 1.18e-64
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204 195 GPSSPSGICIEKIGNGsyLN----MVPHPDGsnRVFLSDQPGKIYLVTvPAQGSgellkideTNPFLDLTeeVHFDAELG 270
Cdd:COG2133  20 TPTLPPGFTVEVVADG--LDhpwgLAFLPDG--RLLVTERAGRIRLLD-DDGKL--------STPVADLP--VFAGGEGG 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204 271 LLGIAFHPDFLKNGRFFASFncdrvkwpecsgkcacnsdidcdpakldsdngATPCQYHSVISEF-FTNGTYVRPVEVrr 349
Cdd:COG2133  85 LLGVALDPDFATNGYLYVAY--------------------------------TDPGGAGTRVARFtLSDGDTLTSEEV-- 130
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204 350 IFTmGLPFSS--HHGGQILFGPkDGYLYFMMGDGGSKGDPYNFAQNKKSLLGKIMRLDVNNvldakamnefqlwgnySIP 427
Cdd:COG2133 131 ILD-GLPAGGgnHNGGRLAFGP-DGKLYVSVGDRGNACEARGNAQDLNSLRGKILRIDPDG----------------SIP 192
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204 428 KDNPFSQDKNLLPEIWAMGVRNPWRCSFDSErpSYFL-CADVGEDQYEEVDMITKGGNYGWHYYEGTLPFHPSSSSNISN 506
Cdd:COG2133 193 ADNPFVGTPGARPEIYAYGHRNPQGLAFDPE--TGELwATEHGPDGGDELNRIEPGGNYGWPYCEGGQNYDPIGDSTPDA 270
                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 42568204 507 STTKienpifPVMWYnhsdinqqeGSSASITGGYFYRSSTDPCLY-GTYLFADLYAGMI----FGGAETPVGS 574
Cdd:COG2133 271 GLTD------PVATW---------PPGHAPSGLAFYTGDAFPAEYrGGLFVADLGSRRVvrvpLDGDGKVVGE 328
GSDH pfam07995
Glucose / Sorbosone dehydrogenase; Members of this family are glucose/sorbosone dehydrogenases ...
215-487 3.13e-27

Glucose / Sorbosone dehydrogenase; Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.


Pssm-ID: 429776 [Multi-domain]  Cd Length: 327  Bit Score: 113.04  E-value: 3.13e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204   215 MVPHPDGsnRVFLSDQPGKIYLVTvpaqGSGELLkidetnPFLDLTEEVHFDAELGLLGIAFHPDFLKNGRFFASFNcdr 294
Cdd:pfam07995   7 LAFLPDG--RMLVTERPGRLRIVD----ADGKLS------TPIAGVPEVAARGQGGLLDVALHPDFAENRWVYLSYA--- 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204   295 vkwpecsgkcacnsdidcdpakLDSDNGATpcqyhSVISEFFTNGTYVRPVEVRRIFTMgLPFSS---HHGGQILFGPkD 371
Cdd:pfam07995  72 ----------------------EAGGGGAG-----TAVARARLSDDGTALEDVEVIFRQ-IPKVSgggHFGSRLVFGP-D 122
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568204   372 GYLYFMMGDGGsKGDPynfAQNKKSLLGKIMRLDvnnvLDAkamnefqlwgnySIPKDNPFSQDKNLLPEIWAMGVRNPW 451
Cdd:pfam07995 123 GTLFVTTGDRG-DRDL---AQDLDSHLGKILRLN----PDG------------SIPADNPFVGRPGALPEIWSYGHRNPQ 182
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 42568204   452 RCSFDSER---------PSyflcadvGEDqyeEVDMITKGGNYGW 487
Cdd:pfam07995 183 GLAFDPDTgrlwehehgPR-------GGD---EINLIEAGKNYGW 217
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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