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Conserved domains on  [gi|15237452|ref|NP_199463|]
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Disease resistance protein (TIR-NBS-LRR class) family [Arabidopsis thaliana]

Protein Classification

disease resistance family protein( domain architecture ID 1000118)

disease resistance family protein similar to Nicotiana glutinosa TMV resistance protein N; resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein

Gene Ontology:  GO:0006952

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PLN03210 super family cl33662
Resistant to P. syringae 6; Provisional
 2-1165 0e+00

Resistant to P. syringae 6; Provisional


The actual alignment was detected with superfamily member PLN03210:

Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 1478.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452     2 ASSRNWVYDVFPSFSGTDVRRNFLSHLLKGL-HKSVNSFRDQNMERSQSLDPMLKQAIRDSRIALVVFSKNYASSSWCLN 80
Cdd:PLN03210    6 SSSRNWVYDVFPSFSGEDVRITFLSHFLKELdRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452    81 ELLEIVKCKEEFGQMVIPIFYCLDPSHVRHQDGDFGKNFEETCGRNTEEEKIQWEKALTDVANLAGFDSVTWDDEAKMIE 160
Cdd:PLN03210   86 ELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIE 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   161 EIANDVSGKLLSTSSTDsAENSIGIEDHIANMSVLLQLEAEEVRMVGIWGSSGIGKTTIARALFNQLSRHFPVSKFIDRA 240
Cdd:PLN03210  166 EIANDVLGKLNLTPSND-FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   241 FVYKSRETYKGANPDDPNMKLHLQGCFLSEILGKKDIKIDHLGALGERLKHQKTLIIIDDLDDLVVLDSLVGKTNWFGCG 320
Cdd:PLN03210  245 FISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSG 324

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   321 SRIIVITNNKQFLRAHGIDHIYEVSLPSKERAQEMFCQSAFGENSPPEGFEELVVEIAWLAGSLPLGLTVFGSALRGRKK 400
Cdd:PLN03210  325 SRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDK 404

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   401 EYWVKMLPRLQNDLDGNIEETLKVSYDAIGNVKDQALFRLIACLFNHVKVRDIELLLADSGLDVNIALENLVDKSLIHVR 480
Cdd:PLN03210  405 EDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR 484

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   481 NDHVEMHRLLQETGRNIVRSQStDNPGEREFLVDSNDSRTVLSEGIGTRKVLGISLDTSKVSEFCVHENAFKGMGNLLFL 560
Cdd:PLN03210  485 EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFL 563

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   561 DISSKTFIEE-EVKVHLPEKINYYSVQPKQLIWDRFPLKCMPYTFL-RNLVKLEMHDSKLEKLWEGAMSFTCLKELDMWA 638
Cdd:PLN03210  564 KFYTKKWDQKkEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRpENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRG 643

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   639 SKYLKEIPDLSKATNIEKLDFGHCWSLVELPSSIRNLNKLLELNMEYCGELETLPTGFNLKSLDYLNFNECWKLRTFPEF 718
Cdd:PLN03210  644 SKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI 723

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   719 ATNISNLILAETSIEEYPSNLYFKNVRELSMGKADSDE--NKCQGVKPFMPMLSPTLTLLELWNIPNLVELSSSFQNLNN 796
Cdd:PLN03210  724 STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKlwERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   797 LERLDICYCRNLESLPTGINLESLVSLNLFGCSRLKRFPDISTNIKYLDLDQTGIEEVPWQIENFFNLTKLTMKGCRELK 876
Cdd:PLN03210  804 LEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ 883

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   877 CVSLNIFKLKHLGEVSFSNCGALTRVDLSCYPSGVEMmkadnadiVSEETTSSLPDScvLNVNFMDCVNLDREPVLHQQS 956
Cdd:PLN03210  884 RVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAM--------ATDNIHSKLPST--VCINFINCFNLDQEALLQQQS 953

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   957 iIFNSMILPGEEVPSYFTYRTSDsqpfgtSSSLPIPLLPTQLSQPFFRFRVCAVVSA------SNGVYIGVYSRFKGRIG 1030
Cdd:PLN03210  954 -IFKQLILSGEEVPSYFTHRTTG------ASLTNIPLLHISPCQPFFRFRACAVVDSesffiiSVSFDIQVCCRFIDRLG 1026

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  1031 NKFDSFGELHKFMEIEKGIHLCIFDCRIRLYKDNVPLSQLNYDHVDINIHITSGDwrSTVVLKEWGIRLLEDCSSAENRl 1110
Cdd:PLN03210 1027 NHFDSPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKN--SQLKLKGCGIRLSEDDSSLNNT- 1103

                        1130      1140      1150      1160      1170
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15237452  1111 gnpnstLPHVCVEDEENLVNGTEQ-GDRGDVVTETSSKQNEDVILLQRSADSMFSR 1165
Cdd:PLN03210 1104 ------LPNVEEADDDNPVNGSEHwEDCEDSALERESERTKDREMRDRLLKKDLNR 1153
 
Name Accession Description Interval E-value
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 2-1165 0e+00

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 1478.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452     2 ASSRNWVYDVFPSFSGTDVRRNFLSHLLKGL-HKSVNSFRDQNMERSQSLDPMLKQAIRDSRIALVVFSKNYASSSWCLN 80
Cdd:PLN03210    6 SSSRNWVYDVFPSFSGEDVRITFLSHFLKELdRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452    81 ELLEIVKCKEEFGQMVIPIFYCLDPSHVRHQDGDFGKNFEETCGRNTEEEKIQWEKALTDVANLAGFDSVTWDDEAKMIE 160
Cdd:PLN03210   86 ELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIE 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   161 EIANDVSGKLLSTSSTDsAENSIGIEDHIANMSVLLQLEAEEVRMVGIWGSSGIGKTTIARALFNQLSRHFPVSKFIDRA 240
Cdd:PLN03210  166 EIANDVLGKLNLTPSND-FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   241 FVYKSRETYKGANPDDPNMKLHLQGCFLSEILGKKDIKIDHLGALGERLKHQKTLIIIDDLDDLVVLDSLVGKTNWFGCG 320
Cdd:PLN03210  245 FISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSG 324

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   321 SRIIVITNNKQFLRAHGIDHIYEVSLPSKERAQEMFCQSAFGENSPPEGFEELVVEIAWLAGSLPLGLTVFGSALRGRKK 400
Cdd:PLN03210  325 SRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDK 404

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   401 EYWVKMLPRLQNDLDGNIEETLKVSYDAIGNVKDQALFRLIACLFNHVKVRDIELLLADSGLDVNIALENLVDKSLIHVR 480
Cdd:PLN03210  405 EDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR 484

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   481 NDHVEMHRLLQETGRNIVRSQStDNPGEREFLVDSNDSRTVLSEGIGTRKVLGISLDTSKVSEFCVHENAFKGMGNLLFL 560
Cdd:PLN03210  485 EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFL 563

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   561 DISSKTFIEE-EVKVHLPEKINYYSVQPKQLIWDRFPLKCMPYTFL-RNLVKLEMHDSKLEKLWEGAMSFTCLKELDMWA 638
Cdd:PLN03210  564 KFYTKKWDQKkEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRpENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRG 643

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   639 SKYLKEIPDLSKATNIEKLDFGHCWSLVELPSSIRNLNKLLELNMEYCGELETLPTGFNLKSLDYLNFNECWKLRTFPEF 718
Cdd:PLN03210  644 SKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI 723

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   719 ATNISNLILAETSIEEYPSNLYFKNVRELSMGKADSDE--NKCQGVKPFMPMLSPTLTLLELWNIPNLVELSSSFQNLNN 796
Cdd:PLN03210  724 STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKlwERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   797 LERLDICYCRNLESLPTGINLESLVSLNLFGCSRLKRFPDISTNIKYLDLDQTGIEEVPWQIENFFNLTKLTMKGCRELK 876
Cdd:PLN03210  804 LEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ 883

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   877 CVSLNIFKLKHLGEVSFSNCGALTRVDLSCYPSGVEMmkadnadiVSEETTSSLPDScvLNVNFMDCVNLDREPVLHQQS 956
Cdd:PLN03210  884 RVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAM--------ATDNIHSKLPST--VCINFINCFNLDQEALLQQQS 953

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   957 iIFNSMILPGEEVPSYFTYRTSDsqpfgtSSSLPIPLLPTQLSQPFFRFRVCAVVSA------SNGVYIGVYSRFKGRIG 1030
Cdd:PLN03210  954 -IFKQLILSGEEVPSYFTHRTTG------ASLTNIPLLHISPCQPFFRFRACAVVDSesffiiSVSFDIQVCCRFIDRLG 1026

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  1031 NKFDSFGELHKFMEIEKGIHLCIFDCRIRLYKDNVPLSQLNYDHVDINIHITSGDwrSTVVLKEWGIRLLEDCSSAENRl 1110
Cdd:PLN03210 1027 NHFDSPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKN--SQLKLKGCGIRLSEDDSSLNNT- 1103

                        1130      1140      1150      1160      1170
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15237452  1111 gnpnstLPHVCVEDEENLVNGTEQ-GDRGDVVTETSSKQNEDVILLQRSADSMFSR 1165
Cdd:PLN03210 1104 ------LPNVEEADDDNPVNGSEHwEDCEDSALERESERTKDREMRDRLLKKDLNR 1153
TIR pfam01582
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ...
 9-173 1.12e-61

TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.


Pssm-ID: 396246 [Multi-domain]  Cd Length: 165  Bit Score: 207.99  E-value: 1.12e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452      9 YDVFPSFSGTDVRRNFLSHLLKGLH-KSVNSFRD-QNMERSQSLDPMLKQAIRDSRIALVVFSKNYASSSWCLNELLEIV 86
Cdd:pfam01582    1 YDVFLSFRGSDTREWFVSHLLKELKqKGIKLFIDdRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWCLDELVKIL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452     87 KCKEEFGQMVIPIFYCLDPSHVRHQDGDFGKNFEETCGRNTEEEKIQWEKALTDVANLAGFDSvtWDDEAKMIEEIANDV 166
Cdd:pfam01582   81 ECALDLGQKVIPIFYEVDPSDVRKQTGSFGKAFKKHKKVLTEEKVLKWRGALNEVANIWHSKS--VSDESKFWKKIAYDI 158


                   ....*..
gi 15237452    167 SGKLLST 173
Cdd:pfam01582  159 SNKLNGT 165
TIR smart00255
Toll - interleukin 1 - resistance;
9-144 1.53e-40

Toll - interleukin 1 - resistance;


Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 146.31  E-value: 1.53e-40
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452       9 YDVFPSFSGT-DVRRNFLSHLLKGL-HKSVNSFRDQNMERSQSLDpMLKQAIRDSRIALVVFSKNYASSSWCLNELLEIV 86
Cdd:smart00255    2 YDVFISYSGKeDVRNEFLSHLLEKLrGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAAL 80

                            90       100       110       120       130       140
                    ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452      87 KCKEEFGQM-VIPIFYCLDPSHVRHQDGDFGKNFEETCGRNTEEEKIQ-WEKALTDVANL 144
Cdd:smart00255   81 ENALEEGGLrVIPIFYEVIPSDVRKQPGKFRKVFKKNYLKWPEDEKEQfWKKALYAVPSK 140
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
602-904 4.19e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 82.29  E-value: 4.19e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  602 YTFLRNLVKLEMHDSKLEKLWEGAMSFTCLKELDMWASKYLKEIPDLSKATNIEKLDFGHCWSLVELPSSIRNLNKLLEL 681
Cdd:COG4886   22 TTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTEL 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  682 NMEYCGELETLPtgfNLKSLDyLNFNecwKLRTFPEF---ATNISNLILAETSIEEYPSNL-YFKNVRELSMGKadsdeN 757
Cdd:COG4886  102 DLSGNEELSNLT---NLESLD-LSGN---QLTDLPEElanLTNLKELDLSNNQLTDLPEPLgNLTNLKSLDLSN-----N 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  758 KCQGVKPFMPMLsPTLTLLELWNIpNLVELSSSFQNLNNLERLDICYCRnLESLPTGI-NLESLVSLNLFGCsRLKRFPD 836
Cdd:COG4886  170 QLTDLPEELGNL-TNLKELDLSNN-QITDLPEPLGNLTNLEELDLSGNQ-LTDLPEPLaNLTNLETLDLSNN-QLTDLPE 245

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  837 IS--TNIKYLDLDQTGIEEVPwQIENFFNLTKLTMKGCRelkcvsLNIFKLKHLGEVSFSNCGALTRVDL 904
Cdd:COG4886  246 LGnlTNLEELDLSNNQLTDLP-PLANLTNLKTLDLSNNQ------LTDLKLKELELLLGLNSLLLLLLLL 308
NK cd02019
Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of ...
 206-264 7.36e-03

Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.


Pssm-ID: 238977 [Multi-domain]  Cd Length: 69  Bit Score: 36.55  E-value: 7.36e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15237452  206 VGIWGSSGIGKTTIARALFNQLSRHFPVskFIDRAFV----YKSRETYKGANPDDPNMKLHLQ 264
Cdd:cd02019    2 IAITGGSGSGKSTVAKKLAEQLGGRSVV--VLDEIVIleglYASYKSRDARIRDLADLKIYLD 62
 
Name Accession Description Interval E-value
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 2-1165 0e+00

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 1478.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452     2 ASSRNWVYDVFPSFSGTDVRRNFLSHLLKGL-HKSVNSFRDQNMERSQSLDPMLKQAIRDSRIALVVFSKNYASSSWCLN 80
Cdd:PLN03210    6 SSSRNWVYDVFPSFSGEDVRITFLSHFLKELdRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452    81 ELLEIVKCKEEFGQMVIPIFYCLDPSHVRHQDGDFGKNFEETCGRNTEEEKIQWEKALTDVANLAGFDSVTWDDEAKMIE 160
Cdd:PLN03210   86 ELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIE 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   161 EIANDVSGKLLSTSSTDsAENSIGIEDHIANMSVLLQLEAEEVRMVGIWGSSGIGKTTIARALFNQLSRHFPVSKFIDRA 240
Cdd:PLN03210  166 EIANDVLGKLNLTPSND-FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   241 FVYKSRETYKGANPDDPNMKLHLQGCFLSEILGKKDIKIDHLGALGERLKHQKTLIIIDDLDDLVVLDSLVGKTNWFGCG 320
Cdd:PLN03210  245 FISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSG 324

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   321 SRIIVITNNKQFLRAHGIDHIYEVSLPSKERAQEMFCQSAFGENSPPEGFEELVVEIAWLAGSLPLGLTVFGSALRGRKK 400
Cdd:PLN03210  325 SRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDK 404

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   401 EYWVKMLPRLQNDLDGNIEETLKVSYDAIGNVKDQALFRLIACLFNHVKVRDIELLLADSGLDVNIALENLVDKSLIHVR 480
Cdd:PLN03210  405 EDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR 484

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   481 NDHVEMHRLLQETGRNIVRSQStDNPGEREFLVDSNDSRTVLSEGIGTRKVLGISLDTSKVSEFCVHENAFKGMGNLLFL 560
Cdd:PLN03210  485 EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFL 563

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   561 DISSKTFIEE-EVKVHLPEKINYYSVQPKQLIWDRFPLKCMPYTFL-RNLVKLEMHDSKLEKLWEGAMSFTCLKELDMWA 638
Cdd:PLN03210  564 KFYTKKWDQKkEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRpENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRG 643

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   639 SKYLKEIPDLSKATNIEKLDFGHCWSLVELPSSIRNLNKLLELNMEYCGELETLPTGFNLKSLDYLNFNECWKLRTFPEF 718
Cdd:PLN03210  644 SKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI 723

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   719 ATNISNLILAETSIEEYPSNLYFKNVRELSMGKADSDE--NKCQGVKPFMPMLSPTLTLLELWNIPNLVELSSSFQNLNN 796
Cdd:PLN03210  724 STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKlwERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   797 LERLDICYCRNLESLPTGINLESLVSLNLFGCSRLKRFPDISTNIKYLDLDQTGIEEVPWQIENFFNLTKLTMKGCRELK 876
Cdd:PLN03210  804 LEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ 883

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   877 CVSLNIFKLKHLGEVSFSNCGALTRVDLSCYPSGVEMmkadnadiVSEETTSSLPDScvLNVNFMDCVNLDREPVLHQQS 956
Cdd:PLN03210  884 RVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAM--------ATDNIHSKLPST--VCINFINCFNLDQEALLQQQS 953

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452   957 iIFNSMILPGEEVPSYFTYRTSDsqpfgtSSSLPIPLLPTQLSQPFFRFRVCAVVSA------SNGVYIGVYSRFKGRIG 1030
Cdd:PLN03210  954 -IFKQLILSGEEVPSYFTHRTTG------ASLTNIPLLHISPCQPFFRFRACAVVDSesffiiSVSFDIQVCCRFIDRLG 1026

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  1031 NKFDSFGELHKFMEIEKGIHLCIFDCRIRLYKDNVPLSQLNYDHVDINIHITSGDwrSTVVLKEWGIRLLEDCSSAENRl 1110
Cdd:PLN03210 1027 NHFDSPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKN--SQLKLKGCGIRLSEDDSSLNNT- 1103

                        1130      1140      1150      1160      1170
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15237452  1111 gnpnstLPHVCVEDEENLVNGTEQ-GDRGDVVTETSSKQNEDVILLQRSADSMFSR 1165
Cdd:PLN03210 1104 ------LPNVEEADDDNPVNGSEHwEDCEDSALERESERTKDREMRDRLLKKDLNR 1153
TIR pfam01582
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ...
 9-173 1.12e-61

TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.


Pssm-ID: 396246 [Multi-domain]  Cd Length: 165  Bit Score: 207.99  E-value: 1.12e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452      9 YDVFPSFSGTDVRRNFLSHLLKGLH-KSVNSFRD-QNMERSQSLDPMLKQAIRDSRIALVVFSKNYASSSWCLNELLEIV 86
Cdd:pfam01582    1 YDVFLSFRGSDTREWFVSHLLKELKqKGIKLFIDdRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWCLDELVKIL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452     87 KCKEEFGQMVIPIFYCLDPSHVRHQDGDFGKNFEETCGRNTEEEKIQWEKALTDVANLAGFDSvtWDDEAKMIEEIANDV 166
Cdd:pfam01582   81 ECALDLGQKVIPIFYEVDPSDVRKQTGSFGKAFKKHKKVLTEEKVLKWRGALNEVANIWHSKS--VSDESKFWKKIAYDI 158


                   ....*..
gi 15237452    167 SGKLLST 173
Cdd:pfam01582  159 SNKLNGT 165
TIR smart00255
Toll - interleukin 1 - resistance;
9-144 1.53e-40

Toll - interleukin 1 - resistance;


Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 146.31  E-value: 1.53e-40
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452       9 YDVFPSFSGT-DVRRNFLSHLLKGL-HKSVNSFRDQNMERSQSLDpMLKQAIRDSRIALVVFSKNYASSSWCLNELLEIV 86
Cdd:smart00255    2 YDVFISYSGKeDVRNEFLSHLLEKLrGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAAL 80

                            90       100       110       120       130       140
                    ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452      87 KCKEEFGQM-VIPIFYCLDPSHVRHQDGDFGKNFEETCGRNTEEEKIQ-WEKALTDVANL 144
Cdd:smart00255   81 ENALEEGGLrVIPIFYEVIPSDVRKQPGKFRKVFKKNYLKWPEDEKEQfWKKALYAVPSK 140
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
602-904 4.19e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 82.29  E-value: 4.19e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  602 YTFLRNLVKLEMHDSKLEKLWEGAMSFTCLKELDMWASKYLKEIPDLSKATNIEKLDFGHCWSLVELPSSIRNLNKLLEL 681
Cdd:COG4886   22 TTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTEL 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  682 NMEYCGELETLPtgfNLKSLDyLNFNecwKLRTFPEF---ATNISNLILAETSIEEYPSNL-YFKNVRELSMGKadsdeN 757
Cdd:COG4886  102 DLSGNEELSNLT---NLESLD-LSGN---QLTDLPEElanLTNLKELDLSNNQLTDLPEPLgNLTNLKSLDLSN-----N 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  758 KCQGVKPFMPMLsPTLTLLELWNIpNLVELSSSFQNLNNLERLDICYCRnLESLPTGI-NLESLVSLNLFGCsRLKRFPD 836
Cdd:COG4886  170 QLTDLPEELGNL-TNLKELDLSNN-QITDLPEPLGNLTNLEELDLSGNQ-LTDLPEPLaNLTNLETLDLSNN-QLTDLPE 245

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  837 IS--TNIKYLDLDQTGIEEVPwQIENFFNLTKLTMKGCRelkcvsLNIFKLKHLGEVSFSNCGALTRVDL 904
Cdd:COG4886  246 LGnlTNLEELDLSNNQLTDLP-PLANLTNLKTLDLSNNQ------LTDLKLKELELLLGLNSLLLLLLLL 308
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
627-892 1.05e-12

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 71.89  E-value: 1.05e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  627 SFTCLKELDMWASKyLKEIPD-LSKATNIEKLDFGHCwSLVELPSSIRNLNKLLELNMEYCgELETLPTGF-NLKSLDYL 704
Cdd:COG4886  111 NLTNLESLDLSGNQ-LTDLPEeLANLTNLKELDLSNN-QLTDLPEPLGNLTNLKSLDLSNN-QLTDLPEELgNLTNLKEL 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  705 NFNECwKLRTFPEfatNISNLilaetsieeypsnlyfknvrelsmgkadsdenkcqgvkpfmpmlsPTLTLLELWNiPNL 784
Cdd:COG4886  188 DLSNN-QITDLPE---PLGNL---------------------------------------------TNLEELDLSG-NQL 217

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  785 VELSSSFQNLNNLERLDICYCRnLESLPTGINLESLVSLNLFGCsRLKRFPDIS--TNIKYLDLDQTGIEEVpwQIENFF 862
Cdd:COG4886  218 TDLPEPLANLTNLETLDLSNNQ-LTDLPELGNLTNLEELDLSNN-QLTDLPPLAnlTNLKTLDLSNNQLTDL--KLKELE 293

                        250       260       270
                 ....*....|....*....|....*....|
gi 15237452  863 NLTKLTMKGCRELKCVSLNIFKLKHLGEVS 892
Cdd:COG4886  294 LLLGLNSLLLLLLLLNLLELLILLLLLTTL 323
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
605-827 1.00e-11

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 68.81  E-value: 1.00e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  605 LRNLVKLEMHDSKLEKLWEGAMSFTCLKELDMWASKyLKEIPD-LSKATNIEKLDFGHCwSLVELPSSIRNLNKLLELNM 683
Cdd:COG4886  112 LTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQ-LTDLPEpLGNLTNLKSLDLSNN-QLTDLPEELGNLTNLKELDL 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  684 EYCgELETLPTGF-NLKSLDYLNFNECwKLRTFPEFATNISNL---ILAETSIEEYPSNLYFKNVRELSMgkadsDENKC 759
Cdd:COG4886  190 SNN-QITDLPEPLgNLTNLEELDLSGN-QLTDLPEPLANLTNLetlDLSNNQLTDLPELGNLTNLEELDL-----SNNQL 262

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15237452  760 QGVKPFMPMlsPTLTLLELWNIP----NLVELSSSFQNLNNLERLDICYCRNLESLPTGINLESLVSLNLFG 827
Cdd:COG4886  263 TDLPPLANL--TNLKTLDLSNNQltdlKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKG 332
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
605-895 5.98e-11

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 66.11  E-value: 5.98e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  605 LRNLVKLEMHDSKLEKLWEGAMSFTCLKELDMWASKYLKEIPDLSKATNIEKLDFGHCWSLVELPSSIRNLNKLLELNME 684
Cdd:COG4886    5 LLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  685 YCGELETLPTGFNLKSLDYLNFNECWKLrtfpefaTNISNLILAETSIEEYPSNL-YFKNVRELSMgkadsDENkcqgvk 763
Cdd:COG4886   85 LLLGLTDLGDLTNLTELDLSGNEELSNL-------TNLESLDLSGNQLTDLPEELaNLTNLKELDL-----SNN------ 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  764 pfmpmlsptltllelwnipNLVELSSSFQNLNNLERLDICYCRnLESLPTGI-NLESLVSLNLFGCsRLKRFPD-IS--T 839
Cdd:COG4886  147 -------------------QLTDLPEPLGNLTNLKSLDLSNNQ-LTDLPEELgNLTNLKELDLSNN-QITDLPEpLGnlT 205

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 15237452  840 NIKYLDLDQTGIEEVPWQIENFFNLTKLTMKGCReLKCVSlNIFKLKHLGEVSFSN 895
Cdd:COG4886  206 NLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQ-LTDLP-ELGNLTNLEELDLSN 259
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
685-905 8.95e-11

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 65.73  E-value: 8.95e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  685 YCGELETLPTGFNLKSLDYLNFNECWKLRTFPEFATNISNLILAETSIEEYPSNLYFKNVRELSMGKADSDENkcQGVKP 764
Cdd:COG4886    1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLL--LLLLS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  765 FMPMLSPTLTLLELWNIPNLVELSSS----FQNLNNLERLDICYCrNLESLPTGI-NLESLVSLNLFGCsRLKRFPD-IS 838
Cdd:COG4886   79 LLLLSLLLLGLTDLGDLTNLTELDLSgneeLSNLTNLESLDLSGN-QLTDLPEELaNLTNLKELDLSNN-QLTDLPEpLG 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452  839 --TNIKYLDLDQTGIEEVPWQIENFFNLTKL------------TMKGCRELKCVSLNIFKLKHLGEvSFSNCGALTRVDL 904
Cdd:COG4886  157 nlTNLKSLDLSNNQLTDLPEELGNLTNLKELdlsnnqitdlpePLGNLTNLEELDLSGNQLTDLPE-PLANLTNLETLDL 235


                 .
gi 15237452  905 S 905
Cdd:COG4886  236 S 236
PLN03194 PLN03194
putative disease resistance protein; Provisional
 10-112 1.15e-08

putative disease resistance protein; Provisional


Pssm-ID: 215626 [Multi-domain]  Cd Length: 187  Bit Score: 56.37  E-value: 1.15e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452    10 DVFPSFSGTDVRRNFLSHLLKGLHK-SVNSFRD-QNMERSQSLDPMLKQAIRDSRIALVVFSKNYASSSWCLNELLEIVK 87
Cdd:PLN03194   28 DVFINHRGIDTKRTIATLLYDHLSRlNLRPFLDnKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIME 107

                          90       100
                  ....*....|....*....|....*
gi 15237452    88 CKEEfgqmVIPIFYCLDPSHVRHQD 112
Cdd:PLN03194  108 SKKR----VIPIFCDVKPSQLRVVD 128
TIR_2 pfam13676
TIR domain; This is a family of Toll-like receptors.
 11-101 1.65e-08

TIR domain; This is a family of Toll-like receptors.


Pssm-ID: 463954 [Multi-domain]  Cd Length: 118  Bit Score: 53.86  E-value: 1.65e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452     11 VFPSFSGTDvrRNFLSHLLKGLHKS-VNSFRDQ-NMERSQSLDPMLKQAIRDSRIALVVFSKNYASSSWCLNElLEIVKC 88
Cdd:pfam13676    1 VFISYAGED--RAWAEWLADALEAAgYRVWLDRwDIRPGDDWVEEIEEAIENSDRVLVVLSPNYLESPWCRAE-WEAALA 77

                           90
                   ....*....|...
gi 15237452     89 KEEFGQMVIPIFY 101
Cdd:pfam13676   78 DPEGRKRLIPVRL 90
NB-ARC pfam00931
NB-ARC domain;
198-427 3.07e-07

NB-ARC domain;


Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 53.15  E-value: 3.07e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452    198 LEAEEVRMVGIWGSSGIGKTTIARALFN---QLSRHFPVskfidRAFVYKSRETYKGANPDDPNMKLHLQGcflSEILGK 274
Cdd:pfam00931   13 SEKDEPGIVGIHGMGGVGKTTLAAQIFNdfdEVEGHFDS-----VAWVVVSKTFTISTLQQTILQNLGLSE---DDWDNK 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452    275 KDIKIdhLGALGERLKHQKTLIIIDDLDDLVVLDSLVGKTNWFGCGSRIIVITNNKQFLRAHG-IDHIYEVSLPSKERAQ 353
Cdd:pfam00931   85 EEGEL--ARKIRRALLTKRFLLVLDDVWDEEDWDKIGIPLPDRENGCRVLLTTRSEEVAGRVGgPSDPHEVELLEPDEAW 162

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452    354 EMFCQSAF-GENSPPEGFEELVVEIAWLAGSLPLGLTVFGSALRGRK-KEYWVKMLPRLQNDLDGNIEET------LKVS 425
Cdd:pfam00931  163 ELFENKVFpKTLGECELLEDVAKEIVEKCRGLPLALKVLGGLLSCKKtVEEWKHVYDVLQSELKSNSYSLnsvrsiLQLS 242


                   ..
gi 15237452    426 YD 427
Cdd:pfam00931  243 YE 244
C-JID pfam20160
C-JID domain; C-terminal jelly roll/Ig-like domain (C-JID) was defined in cryogenic electron ...
 964-1100 2.90e-05

C-JID domain; C-terminal jelly roll/Ig-like domain (C-JID) was defined in cryogenic electron microscopy (cryoEM) structures of plant intracellular immune receptors containing Toll/interleukin-1 receptor (TIR, PF01582), nucleotide-binding (NB-ARC, PF00931) and leucine-rich repeat (LRR) domains (TIR-NLRs). Structurally, the C-JID core is represented by a beta-sandwich made up of 8 to 9 beta-strands. C-JID matches the so-called post LRR domain originally detected via a set of MEME motifs. The domain showed a strong distribution bias towards TIR-NLRs of dicotyledonous plant species despite broader taxonomic distribution of TIR-NLR in plant groups. Structure-function analyses of cryoEM structures suggest that C-JID domains play a role in substrate-recognition, such as binding to effector proteins from pathogens, and thus are involved in the initiation of signaling by TIR-NLR receptors. Presence of C-JID (or post-LRR) and its importance for the function of Arabidopsis TIR-NLR RPS4 that partners with RRS1 for effector recognition suggest that C-JID has additional functions.


Pssm-ID: 466313  Cd Length: 108  Bit Score: 44.36  E-value: 2.90e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237452    964 LPGEEVPSYFTYRtsdsqpfGTSSSLPIPLLPTQLSQPFFRFRVCAVVSasngvyigVYSRFKGRIGNKFDSFGELHKFM 1043
Cdd:pfam20160    1 LPGSQIPEWFNHQ-------STGSSISIKLPENWYNDNFLGFAVCAVGS--------LIPSLHNFLGYIHFFLIPLVSLW 65

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 15237452   1044 EIEKgIHLCIFDcrirlykdnvplsqlNYDHVDINIHITSGDwrstVVLKEWGIRLL 1100
Cdd:pfam20160   66 DTSK-ANGKTPN---------------DYGRIEASFEFPSDL----HEIKQCGVRLI 102
LRR_3 pfam07725
Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected by the ...
 607-624 7.73e-05

Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected by the pfam00560 model.


Pssm-ID: 429621 [Multi-domain]  Cd Length: 20  Bit Score: 40.78  E-value: 7.73e-05
                           10
                   ....*....|....*...
gi 15237452    607 NLVKLEMHDSKLEKLWEG 624
Cdd:pfam07725    1 NLVELNMPYSKLEKLWEG 18
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 204-238 3.28e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 39.66  E-value: 3.28e-03
                            10        20        30
                    ....*....|....*....|....*....|....*
gi 15237452     204 RMVGIWGSSGIGKTTIARALFNQLSRHFPVSKFID 238
Cdd:smart00382    3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37
NK cd02019
Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of ...
 206-264 7.36e-03

Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.


Pssm-ID: 238977 [Multi-domain]  Cd Length: 69  Bit Score: 36.55  E-value: 7.36e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15237452  206 VGIWGSSGIGKTTIARALFNQLSRHFPVskFIDRAFV----YKSRETYKGANPDDPNMKLHLQ 264
Cdd:cd02019    2 IAITGGSGSGKSTVAKKLAEQLGGRSVV--VLDEIVIleglYASYKSRDARIRDLADLKIYLD 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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