|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
30-818 |
4.09e-135 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 422.72 E-value: 4.09e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 30 AHSPSSTSYFH--RVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKN-GDFYAR- 105
Cdd:PLN03077 44 AASSSSSTHDSnsQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSShPSLGVRl 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 106 -NEYIeTKLVIFYAKCDALEIaevlFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACG 184
Cdd:PLN03077 124 gNAML-SMFVRFGELVHAWYV----FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 185 ALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSD 264
Cdd:PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFT 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 265 MRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWN 344
Cdd:PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 345 LIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCG 424
Cdd:PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 425 SIVDAKKVFDSTVEKDlilwntllaayaesglsgealrlfygmqlegvppnvitwnliilsllrngqvdeakdmflqmqs 504
Cdd:PLN03077 439 CIDKALEVFHNIPEKD---------------------------------------------------------------- 454
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 505 sgiipnLISWTTMMNGMVQNGCSEEAILFLRKMQESgLRPNAFSITVALSACAHLASLHIGRTIHGYIIR-NLQHSSLVS 583
Cdd:PLN03077 455 ------VISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRtGIGFDGFLP 527
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 584 ieTSLVDMYAKCGDINKAEKVFGSKlYSELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGD 663
Cdd:PLN03077 528 --NALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 664 INQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLL 743
Cdd:PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIF 684
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15240572 744 ESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEegVHVFVANDKTHTRINEIQMML 818
Cdd:PLN03077 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK--VHAFLTDDESHPQIKEINTVL 757
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
733-791 |
3.51e-18 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 79.12 E-value: 3.51e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 15240572 733 ELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQ 791
Cdd:pfam20431 5 ELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
474-521 |
1.33e-11 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 60.07 E-value: 1.33e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 15240572 474 PNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGM 521
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
592-772 |
6.91e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 54.74 E-value: 6.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 592 YAKCGDINKAEKVFGS--KLYSE-LPLSNAMISAYALYGNLKEAIALYRSLegVGLKPDNITITNVLS-ACNHAGDINQA 667
Cdd:COG2956 18 YLLNGQPDKAIDLLEEalELDPEtVEAHLALGNLYRRRGEYDRAIRIHQKL--LERDPDRAEALLELAqDYLKAGLLDRA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 668 IEIFTDIVSKRSMKPclEHYGLMVDLLASAGETEKAL----RLIEEMPFKPDARMIQSLVAScNKQRKTELVDYLsRKLL 743
Cdd:COG2956 96 EELLEKLLELDPDDA--EALRLLAEIYEQEGDWEKAIevleRLLKLGPENAHAYCELAELYL-EQGDYDEAIEAL-EKAL 171
|
170 180
....*....|....*....|....*....
gi 15240572 744 ESEPENSGNYVTISNAYAVEGSWDEVVKM 772
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAA 200
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
477-510 |
9.82e-06 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 42.83 E-value: 9.82e-06
10 20 30
....*....|....*....|....*....|....
gi 15240572 477 ITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPN 510
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
439-483 |
1.02e-05 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 43.12 E-value: 1.02e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 15240572 439 KDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLII 483
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILI 45
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
512-546 |
2.78e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 41.67 E-value: 2.78e-05
10 20 30
....*....|....*....|....*....|....*
gi 15240572 512 ISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNA 546
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
442-476 |
2.02e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 36.28 E-value: 2.02e-03
10 20 30
....*....|....*....|....*....|....*
gi 15240572 442 ILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNV 476
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
30-818 |
4.09e-135 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 422.72 E-value: 4.09e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 30 AHSPSSTSYFH--RVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKN-GDFYAR- 105
Cdd:PLN03077 44 AASSSSSTHDSnsQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSShPSLGVRl 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 106 -NEYIeTKLVIFYAKCDALEIaevlFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACG 184
Cdd:PLN03077 124 gNAML-SMFVRFGELVHAWYV----FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 185 ALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSD 264
Cdd:PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFT 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 265 MRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWN 344
Cdd:PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 345 LIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCG 424
Cdd:PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 425 SIVDAKKVFDSTVEKDlilwntllaayaesglsgealrlfygmqlegvppnvitwnliilsllrngqvdeakdmflqmqs 504
Cdd:PLN03077 439 CIDKALEVFHNIPEKD---------------------------------------------------------------- 454
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 505 sgiipnLISWTTMMNGMVQNGCSEEAILFLRKMQESgLRPNAFSITVALSACAHLASLHIGRTIHGYIIR-NLQHSSLVS 583
Cdd:PLN03077 455 ------VISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRtGIGFDGFLP 527
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 584 ieTSLVDMYAKCGDINKAEKVFGSKlYSELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGD 663
Cdd:PLN03077 528 --NALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 664 INQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLL 743
Cdd:PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIF 684
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15240572 744 ESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEegVHVFVANDKTHTRINEIQMML 818
Cdd:PLN03077 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK--VHAFLTDDESHPQIKEINTVL 757
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
182-825 |
3.44e-78 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 267.12 E-value: 3.44e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 182 ACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRL 261
Cdd:PLN03081 132 ACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFAL 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 262 FSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVV 341
Cdd:PLN03081 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 342 TWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYA 421
Cdd:PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 422 KCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITwnliilsllrngqvdeakdmFLQ 501
Cdd:PLN03081 372 KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT--------------------FLA 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 502 mqssgiipnliswttmmngmvqngcseeailflrkmqesglrpnafsitvalsacahlaslhigrtihgyiirnlqhssl 581
Cdd:PLN03081 --------------------------------------------------------------------------------
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 582 vsietslvdmyakcgdinkaekvfgsklyselplsnamisayalygnlkeaialyrslegvglkpdnititnVLSACNHA 661
Cdd:PLN03081 432 ------------------------------------------------------------------------VLSACRYS 439
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 662 GDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRK 741
Cdd:PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK 519
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 742 LLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEgvHVFVANDKTHTRINEIQMMLALL 821
Cdd:PLN03081 520 LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQD--HSFFSGDRLHPQSREIYQKLDEL 597
|
....
gi 15240572 822 LYDM 825
Cdd:PLN03081 598 MKEI 601
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
10-517 |
2.03e-61 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 220.51 E-value: 2.03e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 10 PNKVPFSVSsKPSSKHHDEQAHSPSSTSYFHRVSSLCKNGEIKEALSLvtemdFRNLRIG------PEIYGEILQGCVYE 83
Cdd:PLN03081 63 PEPIRIEVS-ESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALEL-----FEILEAGcpftlpASTYDALVEACIAL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 84 RDLSTGKQIHARILKNGdfYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVE 163
Cdd:PLN03081 137 KSIRCVKAVYWHVESSG--FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFRE 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 164 MLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWN 243
Cdd:PLN03081 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWN 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 244 ALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVG 323
Cdd:PLN03081 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 324 LIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEV-QCYCI 402
Cdd:PLN03081 375 RMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIfQSMSE 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 403 RHSFESDIVLASTVMDMYAKCGSIVDA-----KKVFDSTVEkdliLWNTLLAAYAESG------LSGEALrlfYGMQLEG 471
Cdd:PLN03081 455 NHRIKPRAMHYACMIELLGREGLLDEAyamirRAPFKPTVN----MWAALLTACRIHKnlelgrLAAEKL---YGMGPEK 527
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 15240572 472 VPPNVITWNLIIlsllRNGQVDEAKDMFLQMQSSGI-IPNLISWTTM 517
Cdd:PLN03081 528 LNNYVVLLNLYN----SSGRQAEAAKVVETLKRKGLsMHPACTWIEV 570
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
733-791 |
3.51e-18 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 79.12 E-value: 3.51e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 15240572 733 ELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQ 791
Cdd:pfam20431 5 ELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
2-527 |
4.52e-17 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 86.08 E-value: 4.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 2 ASLPFNTIPNKVPFSVSSKPSSKHHDEQAHSPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLrigpeiygeilqgcv 81
Cdd:PLN03218 337 AELPGQSSGQAASDVEEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL--------------- 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 82 yerdLSTGKQIHARilkngdfyarneyietklviFYAKCDALEIAE--VLFSKL-RVRNVFSWAAIIGVKCRIGLCEGAL 158
Cdd:PLN03218 402 ----LDMDKIYHAK--------------------FFKACKKQRAVKeaFRFAKLiRNPTLSTFNMLMSVCASSQDIDGAL 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 159 MGFVEMLENEIFPDNFVVPNVCKACgalkwSRFGR-----GVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDA------ 227
Cdd:PLN03218 458 RVLRLVQEAGLKADCKLYTTLISTC-----AKSGKvdamfEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAfgaygi 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 228 --SKvfDEIPDRnaVAWNALMVGYVQNGKNEEAIRLFSDMRKQG--VEPTRVTVSTCLSASANMGGVEEGKQshaiaIVN 303
Cdd:PLN03218 533 mrSK--NVKPDR--VVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKE-----VYQ 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 304 GMELDNILG-----TSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYV----QQGLVEDAIYMCQLMRLEKLKYD 374
Cdd:PLN03218 604 MIHEYNIKGtpevyTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVdvagHAGDLDKAFEILQDARKQGIKLG 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 375 CVTLATLMSAAARTENLKLGKEVqcycirhsFES--DIVLASTVMDMyakcgsivdakkvfdstvekdlilwNTLLAAYA 452
Cdd:PLN03218 684 TVSYSSLMGACSNAKNWKKALEL--------YEDikSIKLRPTVSTM-------------------------NALITALC 730
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15240572 453 ESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLI---SWTTMMNGMVQNGCS 527
Cdd:PLN03218 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVmcrCITGLCLRRFEKACA 808
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
353-738 |
3.20e-14 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 76.84 E-value: 3.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 353 QGLVEDAIYMCQLMRLEKLKydcvTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSiVDAK-K 431
Cdd:PLN03218 419 QRAVKEAFRFAKLIRNPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK-VDAMfE 493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 432 VF----DSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQM--QSS 505
Cdd:PLN03218 494 VFhemvNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkaETH 573
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 506 GIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGyiirnlqhsslvsie 585
Cdd:PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD--------------- 638
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 586 tslvDMYAKcgDInKAEKVFGSklyselplsnAMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDIN 665
Cdd:PLN03218 639 ----DMKKK--GV-KPDEVFFS----------ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15240572 666 QAIEIFTDIvskRSMK--PCLEHYGLMVDLLASAGETEKALRLIEEMP---FKPDARMIQSLVASCNKQRKTELVDYL 738
Cdd:PLN03218 702 KALELYEDI---KSIKlrPTVSTMNALITALCEGNQLPKALEVLSEMKrlgLCPNTITYSILLVASERKDDADVGLDL 776
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
342-672 |
8.98e-14 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 75.68 E-value: 8.98e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 342 TWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAArtenlKLGKEVQCYCIRHSFESDIVLA-----STV 416
Cdd:PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA-----KSGKVDAMFEVFHEMVNAGVEAnvhtfGAL 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 417 MDMYAKCGSIVDAKKVF----DSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVP--PNVITWNLIILSLLRNG 490
Cdd:PLN03218 514 IDGCARAGQVAKAFGAYgimrSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPidPDHITVGALMKACANAG 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 491 QVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTI-- 568
Cdd:PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIlq 673
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 569 ----HGYIIRNLQHSSLvsietslvdMYAKC--GDINKA----EKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRS 638
Cdd:PLN03218 674 darkQGIKLGTVSYSSL---------MGACSnaKNWKKAlelyEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744
|
330 340 350
....*....|....*....|....*....|....
gi 15240572 639 LEGVGLKPDNITITNVLSACNHAGDINQAIEIFT 672
Cdd:PLN03218 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
474-521 |
1.33e-11 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 60.07 E-value: 1.33e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 15240572 474 PNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGM 521
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
237-286 |
4.04e-11 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 58.53 E-value: 4.04e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15240572 237 RNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASAN 286
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
509-558 |
4.42e-08 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 50.05 E-value: 4.42e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15240572 509 PNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAH 558
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
592-772 |
6.91e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 54.74 E-value: 6.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 592 YAKCGDINKAEKVFGS--KLYSE-LPLSNAMISAYALYGNLKEAIALYRSLegVGLKPDNITITNVLS-ACNHAGDINQA 667
Cdd:COG2956 18 YLLNGQPDKAIDLLEEalELDPEtVEAHLALGNLYRRRGEYDRAIRIHQKL--LERDPDRAEALLELAqDYLKAGLLDRA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 668 IEIFTDIVSKRSMKPclEHYGLMVDLLASAGETEKAL----RLIEEMPFKPDARMIQSLVAScNKQRKTELVDYLsRKLL 743
Cdd:COG2956 96 EELLEKLLELDPDDA--EALRLLAEIYEQEGDWEKAIevleRLLKLGPENAHAYCELAELYL-EQGDYDEAIEAL-EKAL 171
|
170 180
....*....|....*....|....*....
gi 15240572 744 ESEPENSGNYVTISNAYAVEGSWDEVVKM 772
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAA 200
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
588-771 |
1.09e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.96 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 588 LVDMYAKCGDINKAEKVFGS--KLYSELPLSNAMIS-AYALYGNLKEAIALYRSLegVGLKPDNIT-ITNVLSACNHAGD 663
Cdd:COG2956 48 LGNLYRRRGEYDRAIRIHQKllERDPDRAEALLELAqDYLKAGLLDRAEELLEKL--LELDPDDAEaLRLLAEIYEQEGD 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 664 INQAIEIFTDIVskRSMKPCLEHYGLMVDLLASAGETEKALRLIEEM----PFKPDARMIQSLVAScNKQRKTELVDYLs 739
Cdd:COG2956 126 WEKAIEVLERLL--KLGPENAHAYCELAELYLEQGDYDEAIEALEKAlkldPDCARALLLLAELYL-EQGDYEEAIAAL- 201
|
170 180 190
....*....|....*....|....*....|..
gi 15240572 740 RKLLESEPENSGNYVTISNAYAVEGSWDEVVK 771
Cdd:COG2956 202 ERALEQDPDYLPALPRLAELYEKLGDPEEALE 233
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
403-787 |
8.35e-06 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 49.49 E-value: 8.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 403 RHSFESD----IVLASTVMDMYAKCG-----SIVDAKKVFDSTVEKDLilwNTLlaaYAESGLSGEALRLfygMQLEGVP 473
Cdd:PLN03218 245 RHSIAESlftqTVLDSLDYDSYEYNGllqeaAISSGKGIFAESKREEL---YTF---YEEKQSRAKSSRL---PNVKGLR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 474 PNVITWNLIILSLLRNGQVDEAKdmfLQMQSSGiipnliSWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVAL 553
Cdd:PLN03218 316 KGVSSATNSLSLDKKNNGVKDAE---LPGQSSG------QAASDVEEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRI 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 554 SACAHLaslhigrtihgyiirnlqhssLVSIET-SLVDM----YAKCGDINKAEKVFG-----SKLYSELPLS--NAMIS 621
Cdd:PLN03218 387 KDCIDL---------------------LEDMEKrGLLDMdkiyHAKFFKACKKQRAVKeafrfAKLIRNPTLStfNMLMS 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 622 AYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVSKrSMKPCLEHYGLMVDLLASAGETE 701
Cdd:PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVA 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 702 KAL---RLIEEMPFKPDARMIQSLVASCNK----QRKtelVDYLSRKLLESEPENSgNYVTIS---NAYAVEGSWDEVVK 771
Cdd:PLN03218 525 KAFgayGIMRSKNVKPDRVVFNALISACGQsgavDRA---FDVLAEMKAETHPIDP-DHITVGalmKACANAGQVDRAKE 600
|
410
....*....|....*.
gi 15240572 772 MREMMKAKGLKKKPGC 787
Cdd:PLN03218 601 VYQMIHEYNIKGTPEV 616
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
477-510 |
9.82e-06 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 42.83 E-value: 9.82e-06
10 20 30
....*....|....*....|....*....|....
gi 15240572 477 ITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPN 510
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
439-483 |
1.02e-05 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 43.12 E-value: 1.02e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 15240572 439 KDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLII 483
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILI 45
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
240-270 |
2.77e-05 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 41.68 E-value: 2.77e-05
10 20 30
....*....|....*....|....*....|.
gi 15240572 240 VAWNALMVGYVQNGKNEEAIRLFSDMRKQGV 270
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
512-546 |
2.78e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 41.67 E-value: 2.78e-05
10 20 30
....*....|....*....|....*....|....*
gi 15240572 512 ISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNA 546
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
468-786 |
2.79e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.77 E-value: 2.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 468 QLEGVPPNVITwnLIILSLLRNGQVDEA----KDMFLQMQSSGIIPNLISWTtmmngMVQNGCSEEAILFLRKMQEsgLR 543
Cdd:TIGR02917 425 QLDPELGRADL--LLILSYLRSGQFDKAlaaaKKLEKKQPDNASLHNLLGAI-----YLGKGDLAKAREAFEKALS--IE 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 544 PNAFSitvalsACAHLASLHIG-------RTIHGYIIRNLQHSslVSIETSLVDMYAKCGDiNKAEKVFGSKLYS----E 612
Cdd:TIGR02917 496 PDFFP------AAANLARIDIQegnpddaIQRFEKVLTIDPKN--LRAILALAGLYLRTGN-EEEAVAWLEKAAElnpqE 566
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 613 LPLSNAMISAYALYGNLKEAIALYRSLegVGLKPDNITITNVL-SACNHAGDINQAIEIFTDIVSKRSMKPclEHYGLMV 691
Cdd:TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEA--ADAAPDSPEAWLMLgRAQLAAGDLNKAVSSFKKLLALQPDSA--LALLLLA 642
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 692 DLLASAGETEKALR-LIEEMPFKPDARMIQSLVASC-NKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEV 769
Cdd:TIGR02917 643 DAYAVMKNYAKAITsLKRALELKPDNTEAQIGLAQLlLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA 722
|
330
....*....|....*..
gi 15240572 770 VkmreMMKAKGLKKKPG 786
Cdd:TIGR02917 723 I----QAYRKALKRAPS 735
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
470-502 |
6.26e-05 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 40.79 E-value: 6.26e-05
10 20 30
....*....|....*....|....*....|...
gi 15240572 470 EGVPPNVITWNLIILSLLRNGQVDEAKDMFLQM 502
Cdd:pfam12854 1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
240-273 |
8.27e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 40.13 E-value: 8.27e-05
10 20 30
....*....|....*....|....*....|....
gi 15240572 240 VAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPT 273
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
622-749 |
2.36e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.10 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 622 AYALYGNLKEAIALYRSLegVGLKPDNITITNVLSACN-HAGDINQAIEIFTDIVSKRSMKPclEHYGLMVDLLASAGET 700
Cdd:COG4783 13 ALLLAGDYDEAEALLEKA--LELDPDNPEAFALLGEILlQLGDLDEAIVLLHEALELDPDEP--EARLNLGLALLKAGDY 88
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 15240572 701 EKAL----RLIEEMPFKPDARMiqSLVASCNKQRKTELVDYLSRKLLESEPEN 749
Cdd:COG4783 89 DEALalleKALKLDPEHPEAYL--RLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
512-542 |
2.50e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 38.99 E-value: 2.50e-04
10 20 30
....*....|....*....|....*....|.
gi 15240572 512 ISWTTMMNGMVQNGCSEEAILFLRKMQESGL 542
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
477-507 |
2.87e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 38.60 E-value: 2.87e-04
10 20 30
....*....|....*....|....*....|.
gi 15240572 477 ITWNLIILSLLRNGQVDEAKDMFLQMQSSGI 507
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
338-387 |
4.37e-04 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 38.50 E-value: 4.37e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15240572 338 KDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAAR 387
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
229-287 |
4.80e-04 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 38.88 E-value: 4.80e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15240572 229 KVFDEIPDR----NAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANM 287
Cdd:pfam13812 1 SILREMVRDgiqlNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
341-375 |
1.50e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 36.66 E-value: 1.50e-03
10 20 30
....*....|....*....|....*....|....*
gi 15240572 341 VTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDC 375
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
622-768 |
1.68e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 41.15 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 622 AYALYGNLKEAIALYRslEGVGLKPDNITITNVL-SACNHAGDINQAIEIFTDIVSkrsMKP-CLEHYGLMVDLLASAGE 699
Cdd:COG0457 17 AYRRLGRYEEAIEDYE--KALELDPDDAEALYNLgLAYLRLGRYEEALADYEQALE---LDPdDAEALNNLGLALQALGR 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15240572 700 TEKALRLIEE-MPFKPDARMIQSLVASC--NKQRKTELVDYLsRKLLESEPENSGNYVTISNAYAVEGSWDE 768
Cdd:COG0457 92 YEEALEDYDKaLELDPDDAEALYNLGLAllELGRYDEAIEAY-ERALELDPDDADALYNLGIALEKLGRYEE 162
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
334-367 |
1.97e-03 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 36.55 E-value: 1.97e-03
10 20 30
....*....|....*....|....*....|....
gi 15240572 334 RMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMR 367
Cdd:pfam12854 1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
442-476 |
2.02e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 36.28 E-value: 2.02e-03
10 20 30
....*....|....*....|....*....|....*
gi 15240572 442 ILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNV 476
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
609-709 |
3.24e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 609 LYSELPLSNAMISAYALYGNLKEAIALYRslEGVGLKPDNITITNVLSACN-HAGDINQAIEIFTDIVsKRSMKPCLEHY 687
Cdd:COG5010 50 LAKAFAIESPSDNLYNKLGDFEESLALLE--QALQLDPNNPELYYNLALLYsRSGDKDEAKEYYEKAL-ALSPDNPNAYS 126
|
90 100
....*....|....*....|..
gi 15240572 688 GLMVdLLASAGETEKALRLIEE 709
Cdd:COG5010 127 NLAA-LLLSLGQDDEAKAALQR 147
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
617-658 |
4.83e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 35.80 E-value: 4.83e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 15240572 617 NAMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSAC 658
Cdd:pfam13041 7 NTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
313-350 |
5.72e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 35.42 E-value: 5.72e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 15240572 313 TSLLNFYCKVGLIEYAEMVFDRMFEK----DVVTWNLIISGY 350
Cdd:pfam13041 7 NTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGL 48
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
591-709 |
6.55e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.22 E-value: 6.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240572 591 MYAKCGDINKAEKVF--GSKLYSELPLS-NAMISAYALYGNLKEAIALY-RSLEgvgLKPDNITITNVL-SACNHAGDIN 665
Cdd:COG0457 17 AYRRLGRYEEAIEDYekALELDPDDAEAlYNLGLAYLRLGRYEEALADYeQALE---LDPDDAEALNNLgLALQALGRYE 93
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 15240572 666 QAIEIFTDIVSKRSMKP-CLEHYGLmvdLLASAGETEKALRLIEE 709
Cdd:COG0457 94 EALEDYDKALELDPDDAeALYNLGL---ALLELGRYDEAIEAYER 135
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
437-483 |
7.55e-03 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 35.80 E-value: 7.55e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 15240572 437 VEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLII 483
Cdd:pfam13812 11 IQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
462-524 |
8.58e-03 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 35.41 E-value: 8.58e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15240572 462 RLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQN 524
Cdd:pfam13812 1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
661-726 |
8.60e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 35.64 E-value: 8.60e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15240572 661 AGDINQAIEIFTDIVSKRSMKPCLehYGLMVDLLASAGETEKALRLIEEMPFK-PDARMIQSLVASC 726
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEA--RLGLAEALLALGRLDEAEALLAALPAAdPDDPRYAALLAKL 65
|
|
| |
