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Conserved domains on  [gi|15242019|ref|NP_200513|]
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Lycopene beta/epsilon cyclase protein [Arabidopsis thaliana]

Protein Classification

lycopene epsilon-cyclase( domain architecture ID 10010867)

lycopene epsilon-cyclase catalyzes the single epsilon-cyclization reaction which converts lycopene to delta-carotene and neurosporene to alpha-zeacarotene

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN02697 PLN02697
lycopene epsilon cyclase
 1-524 0e+00

lycopene epsilon cyclase


:

Pssm-ID: 215375 [Multi-domain]  Cd Length: 529  Bit Score: 1035.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019    1 MECVGARNFAAMAVSTFPSWSCRRKFPVVKRYSYRNIRFGLCSVRASGGGSSGSESCVAVREDFADEEDFVKAGGSEILF 80
Cdd:PLN02697   1 MECLGARNFAAMAVSTSPGWSSRRRRPVRRGNDVRSSRGLSCTVVATRGGKSGSESCVVVDEEFADEEDYIKAGGSELLF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   81 VQMQQNKDMDEQSKLVDKLPPISIGDGALDLVVIGCGPAGLALAAESAKLGLKVGLIGPDLPFTNNYGVWEDEFNDLGLQ 160
Cdd:PLN02697  81 VQMQANKSMDEQSKIADKLPPISIGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLE 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  161 KCIEHVWRETIVYLDDDKPITIGRAYGRVSRRLLHEELLRRCVESGVSYLSSKVDSITEASDGLRLVACDDNNVIPCRLA 240
Cdd:PLN02697 161 DCIEHVWRDTIVYLDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLA 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  241 TVASGAASGKLLQYEVGGPRVCVQTAYGVEVEVENSPYDPDQMVFMDYRDYTNEKVRSLEAEYPTFLYAMPMTKSRLFFE 320
Cdd:PLN02697 241 TVASGAASGRLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFE 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  321 ETCLASKDVMPFDLLKTKLMLRLDTLGIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAP 400
Cdd:PLN02697 321 ETCLASKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAP 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  401 KYASVIAEILRE-----ETTKQINSNISRQAWDTLWPPERKRQRAFFLFGLALIVQFDTEGIRSFFRTFFRLPKWMWQGF 475
Cdd:PLN02697 401 KYASVIARILKNvssggKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALILQLDTEGIRTFFVTFFRLPKWMWQGF 480

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|....*....
gi 15242019  476 LGSTLTSGDLVLFALYMFVISPNNLRKGLINHLISDPTGATMIKTYLKV 524
Cdd:PLN02697 481 LGSTLSSVDLILFALYMFVIAPNQLRMQLVRHLISDPTGATMIKTYLTL 529
 
Name Accession Description Interval E-value
PLN02697 PLN02697
lycopene epsilon cyclase
 1-524 0e+00

lycopene epsilon cyclase


Pssm-ID: 215375 [Multi-domain]  Cd Length: 529  Bit Score: 1035.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019    1 MECVGARNFAAMAVSTFPSWSCRRKFPVVKRYSYRNIRFGLCSVRASGGGSSGSESCVAVREDFADEEDFVKAGGSEILF 80
Cdd:PLN02697   1 MECLGARNFAAMAVSTSPGWSSRRRRPVRRGNDVRSSRGLSCTVVATRGGKSGSESCVVVDEEFADEEDYIKAGGSELLF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   81 VQMQQNKDMDEQSKLVDKLPPISIGDGALDLVVIGCGPAGLALAAESAKLGLKVGLIGPDLPFTNNYGVWEDEFNDLGLQ 160
Cdd:PLN02697  81 VQMQANKSMDEQSKIADKLPPISIGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLE 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  161 KCIEHVWRETIVYLDDDKPITIGRAYGRVSRRLLHEELLRRCVESGVSYLSSKVDSITEASDGLRLVACDDNNVIPCRLA 240
Cdd:PLN02697 161 DCIEHVWRDTIVYLDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLA 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  241 TVASGAASGKLLQYEVGGPRVCVQTAYGVEVEVENSPYDPDQMVFMDYRDYTNEKVRSLEAEYPTFLYAMPMTKSRLFFE 320
Cdd:PLN02697 241 TVASGAASGRLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFE 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  321 ETCLASKDVMPFDLLKTKLMLRLDTLGIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAP 400
Cdd:PLN02697 321 ETCLASKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAP 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  401 KYASVIAEILRE-----ETTKQINSNISRQAWDTLWPPERKRQRAFFLFGLALIVQFDTEGIRSFFRTFFRLPKWMWQGF 475
Cdd:PLN02697 401 KYASVIARILKNvssggKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALILQLDTEGIRTFFVTFFRLPKWMWQGF 480

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|....*....
gi 15242019  476 LGSTLTSGDLVLFALYMFVISPNNLRKGLINHLISDPTGATMIKTYLKV 524
Cdd:PLN02697 481 LGSTLSSVDLILFALYMFVIAPNQLRMQLVRHLISDPTGATMIKTYLTL 529
Lycopene_cycl pfam05834
Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. ...
 110-502 0e+00

Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclization of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.


Pssm-ID: 310433 [Multi-domain]  Cd Length: 380  Bit Score: 561.27  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   110 DLVVIGCGPAGLALAAES--AKLGLKVGLI--GPDLPFTNNYgVWEDEFNDLG-LQKCIEHVWRETIVYLDDDKPITIGR 184
Cdd:pfam05834   1 DVVIIGAGPAGLSLAARLaaAKPGLSVVLIepGPSLLRPNNY-VWSDEFEDLGaLEDCVGHSWPGTRVHFDDGKPILIGR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   185 AYGRVSRRLLHEELLRRCVESGVSYLSSKVDSITEASDGLRLVACDDNNVIPCRLATVASGAASGKllqyevGGPRVCVQ 264
Cdd:pfam05834  80 AYGRVSSKRLEEEMLQRCVENGVIRLNAKVESVEADPVGESLVVCEGGRTIRARLVFDARGLGSLP------PGRTLGYQ 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   265 TAYGVEVEVENSPYDPDQMVFMDYRDYTnekvrslEAEYPTFLYAMPMTKSRLFFEETCLASKDVMPFDLLKTKLMLRLD 344
Cdd:pfam05834 154 TFYGVEVEVDNPPFDPDVMVLMDARVPQ-------PLKGPTFLYALPLDPDRLLVEETYLSSGPVLPFDALKKRLAAYLR 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   345 TLGIRILKTYEEEWSYIPV--GGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAEILReettkqiNSNI 422
Cdd:pfam05834 227 ALGIRILEVVEEEQGVIPMtlGGDLPNTPQKVLRIGAAAGMVHPATGYSVARSLRLAPKLASAIAAALR-------LSSP 299

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   423 SRQAWDTLWPPERKRQRAFF-LFGLALIVQFDTEGIRSFFRTFFRLPKWMWQGFLGSTLTSGDLVLFALYMFVISPNNLR 501
Cdd:pfam05834 300 SARAWRDLWPRERWRQRGFFrLLGRMLFLALDIEGRRRFFDAFFRLPKELWQRFLASRLSLADLLRIGLHTPVIPMNRAR 379


                  .
gi 15242019   502 K 502
Cdd:pfam05834 380 A 380
carotene-cycl TIGR01790
lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases ...
 110-504 1.60e-177

lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.


Pssm-ID: 130850 [Multi-domain]  Cd Length: 388  Bit Score: 504.66  E-value: 1.60e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   110 DLVVIGCGPAGLALAAESAKLGLKVGLI--GPDLPFTNNYGVWEDEFNDLGLQKCIEHVWRETIVYLDDDKPITIGRAYG 187
Cdd:TIGR01790   1 DLAVIGGGPAGLAIALELARPGLRVQLIepHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   188 RVSRRLLHEELLRRCVESGVSYLSSKVDSITEASDGLRLVACDDNNVIPCRLATVASGAASgkLLQYEVGGPRVCVQTAY 267
Cdd:TIGR01790  81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP--LVQYVRFPLNVGFQVAY 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   268 GVEVEVENSPYDPDQMVFMDYRDYtNEKVRSLEAEYPTFLYAMPMTKSRLFFEETCLASKDVMPFDLLKTKLMLRLDTLG 347
Cdd:TIGR01790 159 GVEARLSRPPHGPSSMVIMDARVD-QLAAPELKGYRPTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQRILARLNAQG 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   348 IRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAEILREEttkqinSNISRQAW 427
Cdd:TIGR01790 238 WQIKTIEEEEWGALPVGLPGPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS------SELATAAW 311

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15242019   428 DTLWPPERKRQRAFFLFGLALIVQFDTEGIRSFFRTFFRLPKWMWQGFLGSTLTSGDLVLFALYMFVISPNNLRKGL 504
Cdd:TIGR01790 312 DGLWPTERRRQRYFRLLGRMLFLALEPEERRRFFQRFFGLPEELWERFLAARLSLPDLLRVLLRMFGQPPNPVRSAL 388
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
117-285 1.78e-09

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 58.83  E-value: 1.78e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019 117 GPAGLALAAESAKLGLKVGLI--GPDLPFTNNYGV----WEDEFNDLGLQKCIEHVWRETIVYLDDDKPITIGRAYGR-- 188
Cdd:COG0644   2 GPAGSAAARRLARAGLSVLLLekGSFPGDKICGGGllprALEELEPLGLDEPLERPVRGARFYSPGGKSVELPPGRGGgy 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019 189 -VSRRLLHEELLRRCVESGVS-YLSSKVDSItEASDGLRLVACDDNNVIPCRLATVASGAAS--GKLLqYEVGGPRVCVQ 264
Cdd:COG0644  82 vVDRARFDRWLAEQAEEAGAEvRTGTRVTDV-LRDDGRVVVRTGDGEEIRADYVVDADGARSllARKL-GLKRRSDEPQD 159

                       170       180
                ....*....|....*....|....
gi 15242019 265 TAYGVEVEVENSP---YDPDQMVF 285
Cdd:COG0644 160 YALAIKEHWELPPlegVDPGAVEF 183
 
Name Accession Description Interval E-value
PLN02697 PLN02697
lycopene epsilon cyclase
 1-524 0e+00

lycopene epsilon cyclase


Pssm-ID: 215375 [Multi-domain]  Cd Length: 529  Bit Score: 1035.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019    1 MECVGARNFAAMAVSTFPSWSCRRKFPVVKRYSYRNIRFGLCSVRASGGGSSGSESCVAVREDFADEEDFVKAGGSEILF 80
Cdd:PLN02697   1 MECLGARNFAAMAVSTSPGWSSRRRRPVRRGNDVRSSRGLSCTVVATRGGKSGSESCVVVDEEFADEEDYIKAGGSELLF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   81 VQMQQNKDMDEQSKLVDKLPPISIGDGALDLVVIGCGPAGLALAAESAKLGLKVGLIGPDLPFTNNYGVWEDEFNDLGLQ 160
Cdd:PLN02697  81 VQMQANKSMDEQSKIADKLPPISIGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLE 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  161 KCIEHVWRETIVYLDDDKPITIGRAYGRVSRRLLHEELLRRCVESGVSYLSSKVDSITEASDGLRLVACDDNNVIPCRLA 240
Cdd:PLN02697 161 DCIEHVWRDTIVYLDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLA 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  241 TVASGAASGKLLQYEVGGPRVCVQTAYGVEVEVENSPYDPDQMVFMDYRDYTNEKVRSLEAEYPTFLYAMPMTKSRLFFE 320
Cdd:PLN02697 241 TVASGAASGRLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFE 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  321 ETCLASKDVMPFDLLKTKLMLRLDTLGIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAP 400
Cdd:PLN02697 321 ETCLASKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAP 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  401 KYASVIAEILRE-----ETTKQINSNISRQAWDTLWPPERKRQRAFFLFGLALIVQFDTEGIRSFFRTFFRLPKWMWQGF 475
Cdd:PLN02697 401 KYASVIARILKNvssggKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALILQLDTEGIRTFFVTFFRLPKWMWQGF 480

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|....*....
gi 15242019  476 LGSTLTSGDLVLFALYMFVISPNNLRKGLINHLISDPTGATMIKTYLKV 524
Cdd:PLN02697 481 LGSTLSSVDLILFALYMFVIAPNQLRMQLVRHLISDPTGATMIKTYLTL 529
Lycopene_cycl pfam05834
Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. ...
 110-502 0e+00

Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclization of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.


Pssm-ID: 310433 [Multi-domain]  Cd Length: 380  Bit Score: 561.27  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   110 DLVVIGCGPAGLALAAES--AKLGLKVGLI--GPDLPFTNNYgVWEDEFNDLG-LQKCIEHVWRETIVYLDDDKPITIGR 184
Cdd:pfam05834   1 DVVIIGAGPAGLSLAARLaaAKPGLSVVLIepGPSLLRPNNY-VWSDEFEDLGaLEDCVGHSWPGTRVHFDDGKPILIGR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   185 AYGRVSRRLLHEELLRRCVESGVSYLSSKVDSITEASDGLRLVACDDNNVIPCRLATVASGAASGKllqyevGGPRVCVQ 264
Cdd:pfam05834  80 AYGRVSSKRLEEEMLQRCVENGVIRLNAKVESVEADPVGESLVVCEGGRTIRARLVFDARGLGSLP------PGRTLGYQ 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   265 TAYGVEVEVENSPYDPDQMVFMDYRDYTnekvrslEAEYPTFLYAMPMTKSRLFFEETCLASKDVMPFDLLKTKLMLRLD 344
Cdd:pfam05834 154 TFYGVEVEVDNPPFDPDVMVLMDARVPQ-------PLKGPTFLYALPLDPDRLLVEETYLSSGPVLPFDALKKRLAAYLR 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   345 TLGIRILKTYEEEWSYIPV--GGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAEILReettkqiNSNI 422
Cdd:pfam05834 227 ALGIRILEVVEEEQGVIPMtlGGDLPNTPQKVLRIGAAAGMVHPATGYSVARSLRLAPKLASAIAAALR-------LSSP 299

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   423 SRQAWDTLWPPERKRQRAFF-LFGLALIVQFDTEGIRSFFRTFFRLPKWMWQGFLGSTLTSGDLVLFALYMFVISPNNLR 501
Cdd:pfam05834 300 SARAWRDLWPRERWRQRGFFrLLGRMLFLALDIEGRRRFFDAFFRLPKELWQRFLASRLSLADLLRIGLHTPVIPMNRAR 379


                  .
gi 15242019   502 K 502
Cdd:pfam05834 380 A 380
carotene-cycl TIGR01790
lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases ...
 110-504 1.60e-177

lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.


Pssm-ID: 130850 [Multi-domain]  Cd Length: 388  Bit Score: 504.66  E-value: 1.60e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   110 DLVVIGCGPAGLALAAESAKLGLKVGLI--GPDLPFTNNYGVWEDEFNDLGLQKCIEHVWRETIVYLDDDKPITIGRAYG 187
Cdd:TIGR01790   1 DLAVIGGGPAGLAIALELARPGLRVQLIepHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   188 RVSRRLLHEELLRRCVESGVSYLSSKVDSITEASDGLRLVACDDNNVIPCRLATVASGAASgkLLQYEVGGPRVCVQTAY 267
Cdd:TIGR01790  81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP--LVQYVRFPLNVGFQVAY 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   268 GVEVEVENSPYDPDQMVFMDYRDYtNEKVRSLEAEYPTFLYAMPMTKSRLFFEETCLASKDVMPFDLLKTKLMLRLDTLG 347
Cdd:TIGR01790 159 GVEARLSRPPHGPSSMVIMDARVD-QLAAPELKGYRPTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQRILARLNAQG 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   348 IRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAEILREEttkqinSNISRQAW 427
Cdd:TIGR01790 238 WQIKTIEEEEWGALPVGLPGPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS------SELATAAW 311

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15242019   428 DTLWPPERKRQRAFFLFGLALIVQFDTEGIRSFFRTFFRLPKWMWQGFLGSTLTSGDLVLFALYMFVISPNNLRKGL 504
Cdd:TIGR01790 312 DGLWPTERRRQRYFRLLGRMLFLALEPEERRRFFQRFFGLPEELWERFLAARLSLPDLLRVLLRMFGQPPNPVRSAL 388
PLN02463 PLN02463
lycopene beta cyclase
 107-501 5.39e-124

lycopene beta cyclase


Pssm-ID: 178082 [Multi-domain]  Cd Length: 447  Bit Score: 370.58  E-value: 5.39e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  107 GALDLVVIGCGPAGLALAAESAKLGLKVGLIGPD--LPFTNNYGVWEDEFNDLGLQKCIEHVWRETIVYLDDDKPITIGR 184
Cdd:PLN02463  27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSplSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDR 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  185 AYGRVSRRLLHEELLRRCVESGVSYLSSKVDSItEASDGLRLVACDDNNVIPCRLATVASGAASgKLLQYEvgGPRV-CV 263
Cdd:PLN02463 107 PYGRVNRKKLKSKMLERCIANGVQFHQAKVKKV-VHEESKSLVVCDDGVKIQASLVLDATGFSR-CLVQYD--KPFNpGY 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  264 QTAYGVEVEVENSPYDPDQMVFMDYRD---YTNEKVRSLEAEYPTFLYAMPMTKSRLFFEETCLASKDVMPFDLLKTKLM 340
Cdd:PLN02463 183 QVAYGILAEVDSHPFDLDKMLFMDWRDshlGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVARPGLPMDDIQERMV 262

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  341 LRLDTLGIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAEILREETTKQINS 420
Cdd:PLN02463 263 ARLRHLGIKVKSVEEDEKCVIPMGGPLPVIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRSNSFRG 342

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019  421 N-ISRQAWDTLWPPERKRQRAFFLFGLALIVQFDTEGIRSFFRTFFRLPKWMWQGFLGSTLTSGDLVLFALYMFVISPNN 499
Cdd:PLN02463 343 DeLSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHYWHGFLSSRLFLPELLLFGLSLFSHASNT 422


                 ..
gi 15242019  500 LR 501
Cdd:PLN02463 423 SR 424
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
117-285 1.78e-09

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 58.83  E-value: 1.78e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019 117 GPAGLALAAESAKLGLKVGLI--GPDLPFTNNYGV----WEDEFNDLGLQKCIEHVWRETIVYLDDDKPITIGRAYGR-- 188
Cdd:COG0644   2 GPAGSAAARRLARAGLSVLLLekGSFPGDKICGGGllprALEELEPLGLDEPLERPVRGARFYSPGGKSVELPPGRGGgy 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019 189 -VSRRLLHEELLRRCVESGVS-YLSSKVDSItEASDGLRLVACDDNNVIPCRLATVASGAAS--GKLLqYEVGGPRVCVQ 264
Cdd:COG0644  82 vVDRARFDRWLAEQAEEAGAEvRTGTRVTDV-LRDDGRVVVRTGDGEEIRADYVVDADGARSllARKL-GLKRRSDEPQD 159

                       170       180
                ....*....|....*....|....
gi 15242019 265 TAYGVEVEVENSP---YDPDQMVF 285
Cdd:COG0644 160 YALAIKEHWELPPlegVDPGAVEF 183
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 110-248 1.01e-07

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 53.79  E-value: 1.01e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019 110 DLVVIGCGPAGLALAAESAKLGLKVGLIGPDLPFTN----------------NYGVWeDEFNDLGlqkcieHVWRETIVY 173
Cdd:COG0654   5 DVLIVGGGPAGLALALALARAGIRVTVVERAPPPRPdgrgialsprslellrRLGLW-DRLLARG------APIRGIRVR 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019 174 LDDD-KPIT------IGRAYGR-VSRRLLHEELLRRCVESGVSYL-SSKVDSITEASDGLRlVACDDNNVIPCRLATVAS 244
Cdd:COG0654  78 DGSDgRVLArfdaaeTGLPAGLvVPRADLERALLEAARALGVELRfGTEVTGLEQDADGVT-VTLADGRTLRADLVVGAD 156


                ....
gi 15242019 245 GAAS 248
Cdd:COG0654 157 GARS 160
lycopene_cycl TIGR01789
lycopene cyclase; This model represents a family of bacterial lycopene cyclases catalyzing the ...
 110-484 1.19e-06

lycopene cyclase; This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.


Pssm-ID: 130849  Cd Length: 370  Bit Score: 50.63  E-value: 1.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   110 DLVVIGCGPAG--LALAAESAKLGLKVGLI--GPDLPFTNNYGVWEDEFNDLG---LQKCIEHVWRETIVYLDDDKpITI 182
Cdd:TIGR01789   1 DCIIVGGGLAGglIALRLQRARPDFRIRVIeaGRTIGGNHTWSFFDSDLSDAQhawLADLVQTDWPGYEVRFPKYR-RKL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   183 GRAYGRVSRRLLHEELLRRCVEsGVsYLSSKVDSITeaSDGLRLVACDDNN---VIPCRLATVASGAASGkllqyevggp 259
Cdd:TIGR01789  80 KTAYRSMTSTRFHEGLLQAFPE-GV-ILGRKAVGLD--ADGVDLAPGTRINarsVIDCRGFKPSAHLKGG---------- 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   260 rvcVQTAYGVEVEVEnSPYDPDQMVFMDYRDYTNEKVRsleaeyptFLYAMPMTKSRLFFEETCLASKDVMPFDLLKTKL 339
Cdd:TIGR01789 146 ---FQVFLGREMRLQ-EPHGLENPIIMDATVDQLAGYR--------FVYVLPLGSHDLLIEDTYYADDPLLDRNALSQRI 213

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   340 MLRLDTLGIRILKTYEEEWSYIPV--GG--SLPNTEQKNLAF-GAAASMVHPATGYsvvrSLSEAPKYASVIAE--ILRE 412
Cdd:TIGR01789 214 DQYARANGWQNGTPVRHEQGVLPVllGGdfSAYQDEVRIVAIaGLRAGLTHPTTGY----SLPVAVENADALAAqpDLSS 289

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15242019   413 ETTKQINSNISRQAWdtlwpperKRQRAFFLFGLALIVQFDTEGIRSFFRTFFRLPKWMWQGFLGSTLTSGD 484
Cdd:TIGR01789 290 EQLAAFIDSRARRHW--------SKTGYYRLLNRMLFFAAKPEKRVRVFQRFYGLREGLIERFYAARSNTFD 353
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 110-137 6.08e-06

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 48.54  E-value: 6.08e-06
                        10        20
                ....*....|....*....|....*...
gi 15242019 110 DLVVIGCGPAGLALAAESAKLGLKVGLI 137
Cdd:COG1249   5 DLVVIGAGPGGYVAAIRAAQLGLKVALV 32
HI0933_like pfam03486
HI0933-like protein;
110-248 8.00e-06

HI0933-like protein;


Pssm-ID: 427330 [Multi-domain]  Cd Length: 406  Bit Score: 48.35  E-value: 8.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   110 DLVVIGCGPAGLALAAESAKLGLKVGLI--------------GPDLPFTNN------------------------YGVWE 151
Cdd:pfam03486   2 DVIVIGGGAAGLMAAISAAKRGRRVLLIekgkklgrkilisgGGRCNVTNLseepdnflsrypgnpkflksalsrFTPWD 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019   152 --DEFNDLGLQKCIEHVWRetiVYLDDDKPITIGRAygrvsrrllheeLLRRCVESGVS-YLSSKVDSITEASDGLRLVA 228
Cdd:pfam03486  82 fiAFFESLGVPLKEEDHGR---LFPDSDKASDIVDA------------LLNELKELGVKiRLRTRVLSVEKDDDGRFRVK 146

                         170       180
                  ....*....|....*....|
gi 15242019   229 CdDNNVIPCRLATVASGAAS 248
Cdd:pfam03486 147 T-GGEELEADSLVLATGGLS 165
PRK06370 PRK06370
FAD-containing oxidoreductase;
110-138 3.69e-05

FAD-containing oxidoreductase;


Pssm-ID: 235787 [Multi-domain]  Cd Length: 463  Bit Score: 46.35  E-value: 3.69e-05
                         10        20
                 ....*....|....*....|....*....
gi 15242019  110 DLVVIGCGPAGLALAAESAKLGLKVGLIG 138
Cdd:PRK06370   7 DAIVIGAGQAGPPLAARAAGLGMKVALIE 35
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
110-251 1.08e-04

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 44.34  E-value: 1.08e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242019 110 DLVVIGCGPAGLALAAESAKLGLKVGLIgpdlpftnnygvwedEFNDLGLQ----KCIEHvwretivYLDDDKPITiGRA 185
Cdd:COG0492   2 DVVIIGAGPAGLTAAIYAARAGLKTLVI---------------EGGEPGGQlattKEIEN-------YPGFPEGIS-GPE 58

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15242019 186 YGrvsrrllhEELLRRCVESGVSYLSSKVDSITEASDGLRlVACDDNNVIPCRlaTV--ASGAASGKL 251
Cdd:COG0492  59 LA--------ERLREQAERFGAEILLEEVTSVDKDDGPFR-VTTDDGTEYEAK--AViiATGAGPRKL 115
PRK09126 PRK09126
FAD-dependent hydroxylase;
110-137 1.37e-04

FAD-dependent hydroxylase;


Pssm-ID: 236385 [Multi-domain]  Cd Length: 392  Bit Score: 44.16  E-value: 1.37e-04
                         10        20
                 ....*....|....*....|....*...
gi 15242019  110 DLVVIGCGPAGLALAAESAKLGLKVGLI 137
Cdd:PRK09126   5 DIVVVGAGPAGLSFARSLAGSGLKVTLI 32
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 110-138 4.08e-04

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 42.31  E-value: 4.08e-04
                          10        20
                  ....*....|....*....|....*....
gi 15242019   110 DLVVIGCGPAGLALAAESAKLGLKVGLIG 138
Cdd:pfam07992   2 DVVVIGGGPAGLAAALTLAQLGGKVTLIE 30
PRK05249 PRK05249
Si-specific NAD(P)(+) transhydrogenase;
110-137 4.94e-04

Si-specific NAD(P)(+) transhydrogenase;


Pssm-ID: 235373 [Multi-domain]  Cd Length: 461  Bit Score: 42.45  E-value: 4.94e-04
                         10        20
                 ....*....|....*....|....*...
gi 15242019  110 DLVVIGCGPAGLALAAESAKLGLKVGLI 137
Cdd:PRK05249   7 DLVVIGSGPAGEGAAMQAAKLGKRVAVI 34
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
 110-137 1.09e-03

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 41.67  E-value: 1.09e-03
                         10        20
                 ....*....|....*....|....*...
gi 15242019  110 DLVVIGCGPAGLALAAESAKLGLKVGLI 137
Cdd:PRK06416   6 DVIVIGAGPGGYVAAIRAAQLGLKVAIV 33
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 110-137 1.60e-03

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 40.93  E-value: 1.60e-03
                         10        20
                 ....*....|....*....|....*...
gi 15242019  110 DLVVIGCGPAGLALAAESAKLGLKVGLI 137
Cdd:PRK06292   5 DVIVIGAGPAGYVAARRAAKLGKKVALI 32
FAD_binding_2 pfam00890
FAD binding domain; This family includes members that bind FAD. This family includes the ...
 110-137 3.50e-03

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


Pssm-ID: 395718 [Multi-domain]  Cd Length: 398  Bit Score: 39.96  E-value: 3.50e-03
                          10        20
                  ....*....|....*....|....*...
gi 15242019   110 DLVVIGCGPAGLALAAESAKLGLKVGLI 137
Cdd:pfam00890   1 DVLVIGGGLAGLAAALAAAEAGLKVAVV 28
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 110-137 3.83e-03

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 39.82  E-value: 3.83e-03
                        10        20
                ....*....|....*....|....*...
gi 15242019 110 DLVVIGCGPAGLALAAESAKLGLKVGLI 137
Cdd:COG1053   5 DVVVVGSGGAGLRAALEAAEAGLKVLVL 32
PTZ00052 PTZ00052
thioredoxin reductase; Provisional
 110-136 4.17e-03

thioredoxin reductase; Provisional


Pssm-ID: 185416 [Multi-domain]  Cd Length: 499  Bit Score: 39.81  E-value: 4.17e-03
                         10        20
                 ....*....|....*....|....*..
gi 15242019  110 DLVVIGCGPAGLALAAESAKLGLKVGL 136
Cdd:PTZ00052   7 DLVVIGGGSGGMAAAKEAAAHGKKVAL 33
TGR TIGR01438
thioredoxin and glutathione reductase selenoprotein; This homodimeric, FAD-containing member ...
 110-137 8.51e-03

thioredoxin and glutathione reductase selenoprotein; This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.


Pssm-ID: 273624 [Multi-domain]  Cd Length: 484  Bit Score: 38.68  E-value: 8.51e-03
                          10        20
                  ....*....|....*....|....*...
gi 15242019   110 DLVVIGCGPAGLALAAESAKLGLKVGLI 137
Cdd:TIGR01438   4 DLIVIGGGSGGLAAAKEAAAYGAKVMLL 31
PRK07494 PRK07494
UbiH/UbiF family hydroxylase;
110-146 9.43e-03

UbiH/UbiF family hydroxylase;


Pssm-ID: 181001 [Multi-domain]  Cd Length: 388  Bit Score: 38.34  E-value: 9.43e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 15242019  110 DLVVIGCGPAGLALAAESAKLGLKVGLIGPDLPFTNN 146
Cdd:PRK07494   9 DIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADL 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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