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Conserved domains on  [gi|15237748|ref|NP_200685|]
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Undecaprenyl pyrophosphate synthetase family protein [Arabidopsis thaliana]

Protein Classification

undecaprenyl diphosphate synthase family protein( domain architecture ID 10000255)

undecaprenyl diphosphate synthase (UPPS) family protein catalyzes consecutive condensation reactions of farnesyl diphosphate (FPP) with specific numbers of isopentenyl diphosphate (IPP) to form long-chain polyprenyl diphosphates, similar to UPPS that catalyzes chain elongation of FPP by eight IPP to form the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis

Gene Ontology:  GO:0016765|GO:0000287|GO:0002094
PubMed:  22471620

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
UppS COG0020
Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];
74-309 4.36e-132

Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];


:

Pssm-ID: 439791  Cd Length: 248  Bit Score: 375.16  E-value: 4.36e-132
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  74 AELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSL 153
Cdd:COG0020  12 PGNLPRHVAIIMDGNGRWAKKRGLPRIEGHRAGVEAVREVVEACAELGIKYLTLYAFSTENWKRPKEEVSFLMGLLREYL 91

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748 154 KTEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEID 233
Cdd:COG0020  92 RRELDELHKNNVRVRVIGDRSRLPESLQEAIEEAEELTKNNTGLTLNIALNYGGRWEIVDAVRKIARDVAAGELDPEDID 171

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15237748 234 ERLIEEELETNctEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFGGRK 309
Cdd:COG0020 172 EETISRYLYTA--DLPDPDLLIRTSGEQRISNFLLWQLAYAELYFTDVLWPDFDKEDLLRAIRDYQRRERRFGGTS 245
 
Name Accession Description Interval E-value
UppS COG0020
Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];
74-309 4.36e-132

Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];


Pssm-ID: 439791  Cd Length: 248  Bit Score: 375.16  E-value: 4.36e-132
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  74 AELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSL 153
Cdd:COG0020  12 PGNLPRHVAIIMDGNGRWAKKRGLPRIEGHRAGVEAVREVVEACAELGIKYLTLYAFSTENWKRPKEEVSFLMGLLREYL 91

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748 154 KTEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEID 233
Cdd:COG0020  92 RRELDELHKNNVRVRVIGDRSRLPESLQEAIEEAEELTKNNTGLTLNIALNYGGRWEIVDAVRKIARDVAAGELDPEDID 171

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15237748 234 ERLIEEELETNctEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFGGRK 309
Cdd:COG0020 172 EETISRYLYTA--DLPDPDLLIRTSGEQRISNFLLWQLAYAELYFTDVLWPDFDKEDLLRAIRDYQRRERRFGGTS 245
Cis_IPPS cd00475
Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) ...
 80-300 1.01e-120

Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.


Pssm-ID: 259850  Cd Length: 219  Bit Score: 345.13  E-value: 1.01e-120
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  80 HVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKTEFQN 159
Cdd:cd00475   1 HVAIIMDGNRRWAKKRGLPRTEGHRAGAEALREILEWCLELGIKYLTLYAFSTENWKRPKEEVDALMKLLREYLEKELEE 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748 160 LAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEIDERLIEE 239
Cdd:cd00475  81 LHKNGVRLRVIGDLSLLPEDLREAIEEAEEATKNNTGLTLNIALNYGGRDEIVRAVRKIARDVKAGELDPEDITEELISK 160

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15237748 240 ELETNctEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQ 300
Cdd:cd00475 161 HLYTA--DLPDPDLLIRTSGEQRLSNFLLWQSAYAELYFTDVLWPDFRKEDLLRAILDYQR 219
Prenyltransf pfam01255
Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family ...
 84-306 1.84e-117

Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.


Pssm-ID: 460138  Cd Length: 220  Bit Score: 337.03  E-value: 1.84e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748    84 IMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERS-LKTEFQNLAK 162
Cdd:pfam01255   1 IMDGNRRWAKKRGLPREAGHRAGAEALREVLEWCLELGIKYLTLYAFSTENWKRPKEEVDALMELLKEEyLRRELPELHK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   163 NNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKdgEIEVEEIDERLIEEELE 242
Cdd:pfam01255  81 NGVRVRVIGDLSLLPEDLQEAIEEAEEATKNNTGLTLNIALNYGGRDEIVDAVRKIVKEGK--KLDPEDIDEELISSHLY 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15237748   243 TNCteFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFG 306
Cdd:pfam01255 159 TAG--LPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRKEDLLRAIRDYQRRERRFG 220
PRK14831 PRK14831
undecaprenyl pyrophosphate synthase; Provisional
 75-307 7.81e-113

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184841  Cd Length: 249  Bit Score: 326.52  E-value: 7.81e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   75 ELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLK 154
Cdd:PRK14831  18 QRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLR 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  155 TEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEIDE 234
Cdd:PRK14831  98 RELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQVQQGELDPSEIDE 177

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15237748  235 RLIEEELETncTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFGG 307
Cdd:PRK14831 178 NLFESELYT--AGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHKALLDYQSRERRFGG 248
uppS TIGR00055
undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule ...
 79-306 5.63e-95

undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule that in bacteria is used a carrier in synthesizing cell wall components. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 129165  Cd Length: 226  Bit Score: 280.44  E-value: 5.63e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748    79 KHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKTEFQ 158
Cdd:TIGR00055   1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   159 NLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEIDERLIE 238
Cdd:TIGR00055  81 ELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVKSGKLLPEDIDEETLN 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15237748   239 EELETNctEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFG 306
Cdd:TIGR00055 161 KHLYTA--NLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRHRRFG 226
 
Name Accession Description Interval E-value
UppS COG0020
Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];
74-309 4.36e-132

Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];


Pssm-ID: 439791  Cd Length: 248  Bit Score: 375.16  E-value: 4.36e-132
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  74 AELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSL 153
Cdd:COG0020  12 PGNLPRHVAIIMDGNGRWAKKRGLPRIEGHRAGVEAVREVVEACAELGIKYLTLYAFSTENWKRPKEEVSFLMGLLREYL 91

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748 154 KTEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEID 233
Cdd:COG0020  92 RRELDELHKNNVRVRVIGDRSRLPESLQEAIEEAEELTKNNTGLTLNIALNYGGRWEIVDAVRKIARDVAAGELDPEDID 171

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15237748 234 ERLIEEELETNctEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFGGRK 309
Cdd:COG0020 172 EETISRYLYTA--DLPDPDLLIRTSGEQRISNFLLWQLAYAELYFTDVLWPDFDKEDLLRAIRDYQRRERRFGGTS 245
Cis_IPPS cd00475
Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) ...
 80-300 1.01e-120

Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.


Pssm-ID: 259850  Cd Length: 219  Bit Score: 345.13  E-value: 1.01e-120
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  80 HVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKTEFQN 159
Cdd:cd00475   1 HVAIIMDGNRRWAKKRGLPRTEGHRAGAEALREILEWCLELGIKYLTLYAFSTENWKRPKEEVDALMKLLREYLEKELEE 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748 160 LAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEIDERLIEE 239
Cdd:cd00475  81 LHKNGVRLRVIGDLSLLPEDLREAIEEAEEATKNNTGLTLNIALNYGGRDEIVRAVRKIARDVKAGELDPEDITEELISK 160

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15237748 240 ELETNctEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQ 300
Cdd:cd00475 161 HLYTA--DLPDPDLLIRTSGEQRLSNFLLWQSAYAELYFTDVLWPDFRKEDLLRAILDYQR 219
Prenyltransf pfam01255
Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family ...
 84-306 1.84e-117

Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.


Pssm-ID: 460138  Cd Length: 220  Bit Score: 337.03  E-value: 1.84e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748    84 IMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERS-LKTEFQNLAK 162
Cdd:pfam01255   1 IMDGNRRWAKKRGLPREAGHRAGAEALREVLEWCLELGIKYLTLYAFSTENWKRPKEEVDALMELLKEEyLRRELPELHK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   163 NNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKdgEIEVEEIDERLIEEELE 242
Cdd:pfam01255  81 NGVRVRVIGDLSLLPEDLQEAIEEAEEATKNNTGLTLNIALNYGGRDEIVDAVRKIVKEGK--KLDPEDIDEELISSHLY 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15237748   243 TNCteFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFG 306
Cdd:pfam01255 159 TAG--LPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRKEDLLRAIRDYQRRERRFG 220
PRK14831 PRK14831
undecaprenyl pyrophosphate synthase; Provisional
 75-307 7.81e-113

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184841  Cd Length: 249  Bit Score: 326.52  E-value: 7.81e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   75 ELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLK 154
Cdd:PRK14831  18 QRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLR 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  155 TEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEIDE 234
Cdd:PRK14831  98 RELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQVQQGELDPSEIDE 177

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15237748  235 RLIEEELETncTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFGG 307
Cdd:PRK14831 178 NLFESELYT--AGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHKALLDYQSRERRFGG 248
PRK14830 PRK14830
undecaprenyl pyrophosphate synthase; Provisional
 75-307 2.48e-108

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184840  Cd Length: 251  Bit Score: 315.28  E-value: 2.48e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   75 ELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLK 154
Cdd:PRK14830  20 GNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLD 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  155 TEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEIDE 234
Cdd:PRK14830 100 KFVPELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDVLDGKLNPEDITE 179

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15237748  235 RLIEEELETNctEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFGG 307
Cdd:PRK14830 180 ELISNYLMTK--GLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELLKAIKDYQSRQRRFGG 250
PRK14836 PRK14836
undecaprenyl pyrophosphate synthase; Provisional
 74-306 2.03e-97

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237831  Cd Length: 253  Bit Score: 287.35  E-value: 2.03e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   74 AELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSL 153
Cdd:PRK14836  11 NENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKAL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  154 KTEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEID 233
Cdd:PRK14836  91 DREVDKLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARALAREVAAGKLAPDEID 170

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15237748  234 ERLIEEELETncTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFG 306
Cdd:PRK14836 171 EALLAQHLAL--ADLPEPDLFIRTSGELRISNFLLWQLAYTELYFTDTLWPDFDAQELQQALEDYASRERRFG 241
uppS TIGR00055
undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule ...
 79-306 5.63e-95

undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule that in bacteria is used a carrier in synthesizing cell wall components. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 129165  Cd Length: 226  Bit Score: 280.44  E-value: 5.63e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748    79 KHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKTEFQ 158
Cdd:TIGR00055   1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   159 NLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEIDERLIE 238
Cdd:TIGR00055  81 ELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVKSGKLLPEDIDEETLN 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15237748   239 EELETNctEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFG 306
Cdd:TIGR00055 161 KHLYTA--NLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRHRRFG 226
PRK14832 PRK14832
undecaprenyl pyrophosphate synthase; Provisional
 77-310 8.62e-95

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237827  Cd Length: 253  Bit Score: 280.73  E-value: 8.62e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   77 MPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKTE 156
Cdd:PRK14832  18 IPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLLFERLLRRE 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  157 FQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEIDERL 236
Cdd:PRK14832  98 LAQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQQGKLSADAVNEQL 177

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15237748  237 IEEELETNCTefPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFGGRKS 310
Cdd:PRK14832 178 VEQHLYTADT--PPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWPDFDRAAFHQALLSYQKRDRRFGQVKA 249
PRK14834 PRK14834
isoprenyl transferase;
78-308 7.33e-90

isoprenyl transferase;


Pssm-ID: 237829  Cd Length: 249  Bit Score: 268.16  E-value: 7.33e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   78 PKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKTEF 157
Cdd:PRK14834  15 PRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLRLFIRRDL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  158 QNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEIDERLI 237
Cdd:PRK14834  95 AELHRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREVAEGRLDPASIDAETI 174

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15237748  238 EEELETncTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFGGR 308
Cdd:PRK14834 175 SANLDT--ADIPDPDLIIRTSGEQRLSNFLLWQAAYSELLFVPIHWPDFDKAALEAAIEEYARRERRFGGL 243
PRK14838 PRK14838
isoprenyl transferase;
77-306 1.14e-83

isoprenyl transferase;


Pssm-ID: 184846  Cd Length: 242  Bit Score: 252.10  E-value: 1.14e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   77 MPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKTE 156
Cdd:PRK14838  10 IPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLLDSIEEE 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  157 fqNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEIDERL 236
Cdd:PRK14838  90 --TFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQIATLVQNGELNPEEITEES 167

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  237 IEEELETNCteFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFG 306
Cdd:PRK14838 168 ISEHLTTNF--MPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFDEEELCKAIYDYQKRERRFG 235
PRK14840 PRK14840
undecaprenyl pyrophosphate synthase; Provisional
 77-308 1.00e-74

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173301  Cd Length: 250  Bit Score: 229.73  E-value: 1.00e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   77 MPKHVAIIMDGNGRWAKN----RGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERS 152
Cdd:PRK14840  18 LPRHVAIIMDGNRRWYRKheqfCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELFSLFNSQ 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  153 LKTEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEI 232
Cdd:PRK14840  98 LDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAFKKLHQDLANKKISSDDI 177

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15237748  233 DERLIEEELETncTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRfGGR 308
Cdd:PRK14840 178 SEELISSYLDT--SGLPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTPNDLLEAIKTYQQRSRR-GGK 250
PRK14833 PRK14833
di-trans,poly-cis-decaprenylcistransferase;
77-309 1.01e-74

di-trans,poly-cis-decaprenylcistransferase;


Pssm-ID: 237828  Cd Length: 233  Bit Score: 228.93  E-value: 1.01e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   77 MPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKTE 156
Cdd:PRK14833   4 TLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLKDE 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  157 FQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVeEIDERL 236
Cdd:PRK14833  84 RSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKLLESPPSHIGEL-ESLEEE 162

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15237748  237 IEEELETncTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFGGRK 309
Cdd:PRK14833 163 ISNCLDT--ADLPEVDLLIRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGGLK 233
PRK14839 PRK14839
di-trans,poly-cis-decaprenylcistransferase;
75-307 1.80e-73

di-trans,poly-cis-decaprenylcistransferase;


Pssm-ID: 237832  Cd Length: 239  Bit Score: 226.18  E-value: 1.80e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   75 ELMPK---HVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFER 151
Cdd:PRK14839   4 SLDRRsglHVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  152 SLKTEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQAcrgiARRVKDGEIEVEE 231
Cdd:PRK14839  84 YLRNETERLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAA----AAKALGPEGLSRE 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15237748  232 IDERLIeeeletnCTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFGG 307
Cdd:PRK14839 160 AFSDLL-------TGDGGDVDLLIRTGGEKRLSDFLLWESAYAELHFTDRMWPDFGADDLAAAVADFHGRERRFGG 228
PRK10240 PRK10240
(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase;
85-307 1.01e-72

(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase;


Pssm-ID: 182326  Cd Length: 229  Bit Score: 223.71  E-value: 1.01e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   85 MDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKTEFQNLAKNN 164
Cdd:PRK10240   1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  165 VRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEIDERLIEEELETN 244
Cdd:PRK10240  81 VRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQVQQGNLQPDQIDEEMLNQHICMH 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15237748  245 ctEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFGG 307
Cdd:PRK10240 161 --ELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGG 221
PRK14829 PRK14829
undecaprenyl pyrophosphate synthase; Provisional
 74-307 2.43e-67

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237826  Cd Length: 243  Bit Score: 210.41  E-value: 2.43e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   74 AELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSL 153
Cdd:PRK14829  11 KNKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVI 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  154 KTEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEID 233
Cdd:PRK14829  91 HRRREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREVRDGKISGDRVT 170

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15237748  234 ERLIEEELETncTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFGG 307
Cdd:PRK14829 171 EKMISDHLYN--PDMPDVDLFLRTSGEQRTSNFLLWQSAYAELDFVPKLFPDFGRDDLWAAIDEYAHRDRRFGG 242
PRK14841 PRK14841
undecaprenyl pyrophosphate synthase; Provisional
 77-307 2.47e-66

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173302  Cd Length: 233  Bit Score: 207.54  E-value: 2.47e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   77 MPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKTE 156
Cdd:PRK14841   3 IPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDRE 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  157 FQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGeiEVEEIDERL 236
Cdd:PRK14841  83 MELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDVSQG--KKIELTEET 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15237748  237 IEEELETncTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFGG 307
Cdd:PRK14841 161 FRQYLYL--PDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFLRAIESYSKRERRFGG 229
PRK14842 PRK14842
undecaprenyl pyrophosphate synthase; Provisional
 73-307 4.18e-61

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173303  Cd Length: 241  Bit Score: 194.44  E-value: 4.18e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   73 HAELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERS 152
Cdd:PRK14842   4 FESTIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEF 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  153 LKTEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQAC-RGIARRVKdgeiEVEE 231
Cdd:PRK14842  84 IETRLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAqEVFLARKA----KKVT 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15237748  232 IDERLIEEELETNCTEFPYP--DLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFGG 307
Cdd:PRK14842 160 LEKPLKEKEFEKFLYTSPLPpvDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPDFDKNSLVDSLKWYETRTRKFGG 237
PRK14827 PRK14827
undecaprenyl pyrophosphate synthase; Provisional
 74-306 4.86e-60

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173288  Cd Length: 296  Bit Score: 193.63  E-value: 4.86e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   74 AELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVelCG--KWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFER 151
Cdd:PRK14827  64 ADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIA--CGaiELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRD 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  152 SLKTEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEE 231
Cdd:PRK14827 142 VVRRRRDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVITINYCVNYGGRTEITEATREIAREAAAGRLNPER 221

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15237748  232 IDERLIEEELETncTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFG 306
Cdd:PRK14827 222 ITESTIARHLQR--PDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRNRRFG 294
PRK14835 PRK14835
isoprenyl transferase;
77-306 1.65e-57

isoprenyl transferase;


Pssm-ID: 237830  Cd Length: 275  Bit Score: 186.59  E-value: 1.65e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   77 MPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERslktE 156
Cdd:PRK14835  41 LPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLMNLFER----E 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  157 FQNLAK------NNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGI----ARRVKDGE 226
Cdd:PRK14835 117 ARRMAVdprihaNRVRVRAIGRHDGFPPKVLEALEELEERTEGHEGMLLNIAVGYGGREEIVDAVKSLlleaAATGKSPE 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  227 IEVEEIDERLIEEELETncTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFG 306
Cdd:PRK14835 197 EVAAELTPEHISAHLYT--AGVPDPDFIIRTSGEIRLSGFLLWQSAYSEYYFCDVYWPGFRKVDFLRALRDYQGRERRFG 274
PRK14828 PRK14828
undecaprenyl pyrophosphate synthase; Provisional
 78-307 2.10e-54

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237825  Cd Length: 256  Bit Score: 177.63  E-value: 2.10e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   78 PKHVAIIMDGNGRWAKNRGL-QPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKte 156
Cdd:PRK14828  27 PGHVGIIVDGNRRWARKAGFtDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLLDIIEDVVR-- 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  157 fQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEIDERL 236
Cdd:PRK14828 105 -QLAPDGRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGGRQEIVDAVRSLLTEHKDKGTSIDELAESV 183

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15237748  237 IEEELETN--CTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFGG 307
Cdd:PRK14828 184 TVDAISTHlyTGGQPDPDLVIRTSGEQRLSGFMLWQSAHSEYYFCETYWPAFRKVDFLRALRDYSQRERRFGK 256
PRK14837 PRK14837
undecaprenyl pyrophosphate synthase; Provisional
 77-306 5.56e-51

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173298  Cd Length: 230  Bit Score: 168.08  E-value: 5.56e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   77 MPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKTE 156
Cdd:PRK14837   6 LPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADYLSSE 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  157 FQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQAcrgiARRVKDGEIEVEEIDERL 236
Cdd:PRK14837  86 FNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRA----VKKFLSSGLDLETLNENV 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  237 IEEELETncTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQRQRRFG 306
Cdd:PRK14837 162 FSKFLDN--PELPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYYVNHYSKDLECFKNRKRNFG 229
PTZ00349 PTZ00349
dehydrodolichyl diphosphate synthetase; Provisional
 79-298 4.37e-36

dehydrodolichyl diphosphate synthetase; Provisional


Pssm-ID: 185571  Cd Length: 322  Bit Score: 132.04  E-value: 4.37e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748   79 KHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKTE-- 156
Cdd:PTZ00349  21 KHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLFYLNLLILINEdf 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  157 FQNLAKNN-VRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYD-----------------------VL 212
Cdd:PTZ00349 101 FFKFIKDNkIKIKIIGNLSYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEmslckfnpnlyfdtyknlleekkIL 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237748  213 QACRGIARRVKDGEIEV----EEID--ERLIEEE-------LETNC------------------------TEFPYPDLLI 255
Cdd:PTZ00349 181 CGSNILTDPIKEGTFAIpddeDECDylDHELENEridldlkFDGDCicgeksflneeqieivnyhkklltSDLPPPNILI 260

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 15237748  256 RTSGELRVSNFLLWQLA-YTELFFAQELWPDFGRSGFIEALMSF 298
Cdd:PTZ00349 261 RTSGEKRLSDFMLYQISeFTEIYFINEYWPIFNFLQFIYIILHY 304
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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