NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|30697242|ref|NP_200759|]
View 

ROTUNDIFOLIA like 5 [Arabidopsis thaliana]

Protein Classification

DVL domain-containing protein( domain architecture ID 10547741)

DVL domain-containing protein similar to Arabidopsis thaliana DVL small polypeptides that act as important regulatory molecules coordinating cellular responses required for differentiation, growth, and development

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DVL pfam08137
DVL family; This family consists of the DVL family of proteins. In a gain-of-function genetic ...
 118-136 8.28e-06

DVL family; This family consists of the DVL family of proteins. In a gain-of-function genetic screen for genes that influence fruit development in Arabidopsis, DEVIL (DVL) gene was identified. DVL is a small protein and overexpression of the protein results in pleiotropic phenotypes featured by shortened stature, rounder rosette leaves, clustered inflorescences, shortened pedicles, and siliques with pronged tips. DVL family is a novel class of small polypeptides and the overexpression phenotypes suggest that these polypeptides may have a role in plant development.


:

Pssm-ID: 462367  Cd Length: 19  Bit Score: 40.22  E-value: 8.28e-06
                          10
                  ....*....|....*....
gi 30697242   118 KEHKSRFYIMKRCVLMLVC 136
Cdd:pfam08137   1 KEQRARLYIIRRCIVMLLC 19
 
Name Accession Description Interval E-value
DVL pfam08137
DVL family; This family consists of the DVL family of proteins. In a gain-of-function genetic ...
 118-136 8.28e-06

DVL family; This family consists of the DVL family of proteins. In a gain-of-function genetic screen for genes that influence fruit development in Arabidopsis, DEVIL (DVL) gene was identified. DVL is a small protein and overexpression of the protein results in pleiotropic phenotypes featured by shortened stature, rounder rosette leaves, clustered inflorescences, shortened pedicles, and siliques with pronged tips. DVL family is a novel class of small polypeptides and the overexpression phenotypes suggest that these polypeptides may have a role in plant development.


Pssm-ID: 462367  Cd Length: 19  Bit Score: 40.22  E-value: 8.28e-06
                          10
                  ....*....|....*....
gi 30697242   118 KEHKSRFYIMKRCVLMLVC 136
Cdd:pfam08137   1 KEQRARLYIIRRCIVMLLC 19
 
Name Accession Description Interval E-value
DVL pfam08137
DVL family; This family consists of the DVL family of proteins. In a gain-of-function genetic ...
 118-136 8.28e-06

DVL family; This family consists of the DVL family of proteins. In a gain-of-function genetic screen for genes that influence fruit development in Arabidopsis, DEVIL (DVL) gene was identified. DVL is a small protein and overexpression of the protein results in pleiotropic phenotypes featured by shortened stature, rounder rosette leaves, clustered inflorescences, shortened pedicles, and siliques with pronged tips. DVL family is a novel class of small polypeptides and the overexpression phenotypes suggest that these polypeptides may have a role in plant development.


Pssm-ID: 462367  Cd Length: 19  Bit Score: 40.22  E-value: 8.28e-06
                          10
                  ....*....|....*....
gi 30697242   118 KEHKSRFYIMKRCVLMLVC 136
Cdd:pfam08137   1 KEQRARLYIIRRCIVMLLC 19
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH