NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|42568678|ref|NP_200895|]
View 

Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

Protein Classification

RCC1-like domain-containing protein( domain architecture ID 18806193)

RCC1 (regulator of chromosome condensation)-like (RLD) domain-containing protein harbors a versatile domain which may perform many different functions, including guanine nucleotide exchange on small GTP-binding proteins, enzyme inhibition or interaction with proteins and lipids

Gene Ontology:  GO:0006397|GO:0008380
PubMed:  18442486

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 50-411 2.36e-63

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 207.91  E-value: 2.36e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678  50 LFSWGRGASGQLGGGIEEIRMYPSPVANLlfrsdqsfslaqtpgridadsSSFrIGISCGLFHS-GLTIDGDLWIWGKGD 128
Cdd:COG5184  19 VWCWGDNSYGQLGDGTTTDRSTPVRVPGL---------------------SNV-VAVAAGGDHTcALKADGTVWCWGNNS 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678 129 GGRLGFGQENSVFVPNLNPLFeeHSIRCIALGGLHSVALTHQGDVFTWGYGGFGALGHKVYTRELVPRRVDDSWDcKISA 208
Cdd:COG5184  77 YGQLGDGTTTDRTTPVKVPGL--TGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGLS-GVVA 153

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678 209 IATSGTHTAAITESGELYMWGReegdgrlglgpgrgpNEGGGL--------SVPSKVKALTvPVASVSCGGFFTMALTKE 280
Cdd:COG5184 154 IAAGGYHTCALKSDGTVWCWGA---------------NSYGQLgdgtttdrPTPVQVGGLS-GVVAVAAGGDHSCALKSD 217

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678 281 GQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVriTQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVPTEI 360
Cdd:COG5184 218 GTVWCWGSNSSGQLGDGTTTDRATPVQVAGLTGV--VAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKV 295

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|.
gi 42568678 361 EALADkkIVFIASGGSSSAAITDGGELWMWGNAKDFQLGvPGLPEIQTTPV 411
Cdd:COG5184 296 PGLSG--VVAVAAGSSHTCALLTDGTVWCWGDNAYGQLG-DGTTTDRSTPV 343
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
385-440 1.30e-04

Regulator of chromosome condensation (RCC1) repeat;


:

Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 39.42  E-value: 1.30e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 42568678   385 GELWMWGNAKDFQLGVpGLPEIQTTPVEVNFLTEedecqpHKVISISIGASHALCL 440
Cdd:pfam00415   2 GRVYTWGRNDYGQLGL-GTTENVLVPQKVEGLSG------NKVVQVACGGDHTVAL 50
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 50-411 2.36e-63

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 207.91  E-value: 2.36e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678  50 LFSWGRGASGQLGGGIEEIRMYPSPVANLlfrsdqsfslaqtpgridadsSSFrIGISCGLFHS-GLTIDGDLWIWGKGD 128
Cdd:COG5184  19 VWCWGDNSYGQLGDGTTTDRSTPVRVPGL---------------------SNV-VAVAAGGDHTcALKADGTVWCWGNNS 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678 129 GGRLGFGQENSVFVPNLNPLFeeHSIRCIALGGLHSVALTHQGDVFTWGYGGFGALGHKVYTRELVPRRVDDSWDcKISA 208
Cdd:COG5184  77 YGQLGDGTTTDRTTPVKVPGL--TGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGLS-GVVA 153

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678 209 IATSGTHTAAITESGELYMWGReegdgrlglgpgrgpNEGGGL--------SVPSKVKALTvPVASVSCGGFFTMALTKE 280
Cdd:COG5184 154 IAAGGYHTCALKSDGTVWCWGA---------------NSYGQLgdgtttdrPTPVQVGGLS-GVVAVAAGGDHSCALKSD 217

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678 281 GQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVriTQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVPTEI 360
Cdd:COG5184 218 GTVWCWGSNSSGQLGDGTTTDRATPVQVAGLTGV--VAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKV 295

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|.
gi 42568678 361 EALADkkIVFIASGGSSSAAITDGGELWMWGNAKDFQLGvPGLPEIQTTPV 411
Cdd:COG5184 296 PGLSG--VVAVAAGSSHTCALLTDGTVWCWGDNAYGQLG-DGTTTDRSTPV 343
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
280-329 7.50e-14

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 65.62  E-value: 7.50e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 42568678   280 EGQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVRITQIACGGYHSLAL 329
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
385-440 1.30e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 39.42  E-value: 1.30e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 42568678   385 GELWMWGNAKDFQLGVpGLPEIQTTPVEVNFLTEedecqpHKVISISIGASHALCL 440
Cdd:pfam00415   2 GRVYTWGRNDYGQLGL-GTTENVLVPQKVEGLSG------NKVVQVACGGDHTVAL 50
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 50-411 2.36e-63

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 207.91  E-value: 2.36e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678  50 LFSWGRGASGQLGGGIEEIRMYPSPVANLlfrsdqsfslaqtpgridadsSSFrIGISCGLFHS-GLTIDGDLWIWGKGD 128
Cdd:COG5184  19 VWCWGDNSYGQLGDGTTTDRSTPVRVPGL---------------------SNV-VAVAAGGDHTcALKADGTVWCWGNNS 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678 129 GGRLGFGQENSVFVPNLNPLFeeHSIRCIALGGLHSVALTHQGDVFTWGYGGFGALGHKVYTRELVPRRVDDSWDcKISA 208
Cdd:COG5184  77 YGQLGDGTTTDRTTPVKVPGL--TGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGLS-GVVA 153

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678 209 IATSGTHTAAITESGELYMWGReegdgrlglgpgrgpNEGGGL--------SVPSKVKALTvPVASVSCGGFFTMALTKE 280
Cdd:COG5184 154 IAAGGYHTCALKSDGTVWCWGA---------------NSYGQLgdgtttdrPTPVQVGGLS-GVVAVAAGGDHSCALKSD 217

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678 281 GQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVriTQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVPTEI 360
Cdd:COG5184 218 GTVWCWGSNSSGQLGDGTTTDRATPVQVAGLTGV--VAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKV 295

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|.
gi 42568678 361 EALADkkIVFIASGGSSSAAITDGGELWMWGNAKDFQLGvPGLPEIQTTPV 411
Cdd:COG5184 296 PGLSG--VVAVAAGSSHTCALLTDGTVWCWGDNAYGQLG-DGTTTDRSTPV 343
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 106-442 3.14e-63

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 207.52  E-value: 3.14e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678 106 ISCGLFHS-GLTIDGDLWIWGKGDGGRLGFGQENSVFVPNLNPLFEehSIRCIALGGLHSVALTHQGDVFTWGYGGFGAL 184
Cdd:COG5184   3 VAAGGSHScALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLS--NVVAVAAGGDHTCALKADGTVWCWGNNSYGQL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678 185 GHKVYTRELVPRRVDDSWDckISAIATSGTHTAAITESGELYMWGReegdgrlglgpgrgpNEGGGL--------SVPSK 256
Cdd:COG5184  81 GDGTTTDRTTPVKVPGLTG--VVAVAAGYYHSCALKSDGTVWCWGD---------------NSSGQLgdgtttnrLTPVQ 143

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678 257 VKALTVPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVriTQIACGGYHSLALTEEGKVL 336
Cdd:COG5184 144 VDAGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLSGV--VAVAAGGDHSCALKSDGTVW 221

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678 337 SWGHGGHGQLGSSSLRNQKVPTEIEALADkkIVFIASGGSSSAAITDGGELWMWGNAKDFQLGVpGLPEIQTTPVEVNFL 416
Cdd:COG5184 222 CWGSNSSGQLGDGTTTDRATPVQVAGLTG--VVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGD-GTTTDRSTPVKVPGL 298

                       330       340
                ....*....|....*....|....*.
gi 42568678 417 TeedecqphKVISISIGASHALCLVS 442
Cdd:COG5184 299 S--------GVVAVAAGSSHTCALLT 316
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 207-442 2.85e-43

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 155.13  E-value: 2.85e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678 207 SAIATSGTHTAAITESGELYMWGReegdgrlglgpgrgpNEGGGL--------SVPSKVKALTvPVASVSCGGFFTMALT 278
Cdd:COG5184   1 TQVAAGGSHSCALKSDGTVWCWGD---------------NSYGQLgdgtttdrSTPVRVPGLS-NVVAVAAGGDHTCALK 64

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678 279 KEGQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVriTQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVPT 358
Cdd:COG5184  65 ADGTVWCWGNNSYGQLGDGTTTDRTTPVKVPGLTGV--VAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPV 142

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678 359 EIeALADKKIVFIASGGSSSAAITDGGELWMWGNAKDFQLGVPGLPEiQTTPVEVNFLTEedecqphkVISISIGASHAL 438
Cdd:COG5184 143 QV-DAGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTD-RPTPVQVGGLSG--------VVAVAAGGDHSC 212


                ....
gi 42568678 439 CLVS 442
Cdd:COG5184 213 ALKS 216
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 49-195 1.25e-14

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 74.63  E-value: 1.25e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42568678  49 QLFSWGRGASGQLGGGIEEIRMYPSPVAnllfrsdqsfslaqTPGRIDAdsssfrigISCGLFHS-GLTIDGDLWIWGKG 127
Cdd:COG5184 219 TVWCWGSNSSGQLGDGTTTDRATPVQVA--------------GLTGVVA--------IAAGGSHTcALKSDGTVWCWGDN 276

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42568678 128 DGGRLGFGQENSVFVPnlNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGYGGFGALGHKVYTRELVP 195
Cdd:COG5184 277 SYGQLGDGTTTDRSTP--VKVPGLSGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTP 342
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
280-329 7.50e-14

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 65.62  E-value: 7.50e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 42568678   280 EGQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVRITQIACGGYHSLAL 329
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
332-381 1.06e-09

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 53.68  E-value: 1.06e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 42568678   332 EGKVLSWGHGGHGQLGSSSLRNQKVPTEIEALADKKIVFIASGGSSSAAI 381
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
316-345 4.50e-09

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 51.66  E-value: 4.50e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 42568678   316 ITQIACGGYHSLALTEEGKVLSWGHGGHGQ 345
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
171-219 5.53e-08

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 49.05  E-value: 5.53e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 42568678   171 GDVFTWGYGGFGALGHKVYTRELVPRRVDDSWDCKISAIATSGTHTAAI 219
Cdd:pfam00415   2 GRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
118-167 1.66e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 47.51  E-value: 1.66e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 42568678   118 DGDLWIWGKGDGGRLGFGQENSVFVPNLNPLFEEHSIRCIALGGLHSVAL 167
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
264-291 7.80e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 42.41  E-value: 7.80e-06
                          10        20
                  ....*....|....*....|....*...
gi 42568678   264 VASVSCGGFFTMALTKEGQLWNWGANSN 291
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSY 28
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
385-440 1.30e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 39.42  E-value: 1.30e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 42568678   385 GELWMWGNAKDFQLGVpGLPEIQTTPVEVNFLTEedecqpHKVISISIGASHALCL 440
Cdd:pfam00415   2 GRVYTWGRNDYGQLGL-GTTENVLVPQKVEGLSG------NKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
154-182 1.58e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 35.86  E-value: 1.58e-03
                          10        20
                  ....*....|....*....|....*....
gi 42568678   154 IRCIALGGLHSVALTHQGDVFTWGYGGFG 182
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYG 29
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
49-81 3.20e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 35.57  E-value: 3.20e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 42568678    49 QLFSWGRGASGQLGGGIEEIRMYPSPVANLLFR 81
Cdd:pfam00415   3 RVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGN 35
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
222-277 3.74e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 35.19  E-value: 3.74e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 42568678   222 SGELYMWGReegdgrlglgpgrgpNEGGGL--------SVPSKVKALT-VPVASVSCGGFFTMAL 277
Cdd:pfam00415   1 DGRVYTWGR---------------NDYGQLglgttenvLVPQKVEGLSgNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
206-230 4.80e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 34.32  E-value: 4.80e-03
                          10        20
                  ....*....|....*....|....*
gi 42568678   206 ISAIATSGTHTAAITESGELYMWGR 230
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGD 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH