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Conserved domains on  [gi|15595383|ref|NP_248875|]
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ABC transporter permease [Pseudomonas aeruginosa PAO1]

Protein Classification

ABC transporter permease( domain architecture ID 11427288)

ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Gene Ontology:  GO:0022857|GO:0005524
PubMed:  35642569

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 50-274 1.33e-54

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 184.58  E-value: 1.33e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  50 VASHRHWMSAQVLPTPELVWQSARELLA-GELWSELAISLRRLAWGLLAGVASGAALGAWLGFSPRAERLVFPTFSALAQ 128
Cdd:COG0600  28 LAARLGLVPPFLLPSPSAVLAALVELLAsGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLRRLLDPLLVFLRP 107

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 129 IPTLAWIPLFMLFFGIGELLKLVVLVKAVVVPVTIHTLVGVRDAQPKLREAAAVLRLPPRLLVWRLILPAALPAFLTGLR 208
Cdd:COG0600 108 IPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLR 187

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15595383 209 LALAQGWTSLLAVELLASSEGIGYLMVQGRQLFMLDIVFVCILIIGLVGVGMDRAIQWLDRRLLHW 274
Cdd:COG0600 188 IALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRLLERRLLRW 253
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 283-536 7.75e-51

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 174.57  E-value: 7.75e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 283 RRRPPGRGWQRLQVWLPPLALLLLWQSASSAEWVDPAILASPLEVARATWSGALDGSLPGALFDSLKRTLGGLLLGGGLG 362
Cdd:COG0600   2 TTSTRRRLRRLLLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVELLASGELWEHLLASLLRVLLGFALAALLG 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 363 FLGGLLLGLWRPAERFFGPTFAALRQVAIFAWVPLLTAWFGLGEPAKLTFVAIAAFFPLLLATQRGIASLPPSLGEAARV 442
Cdd:COG0600  82 VPLGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARS 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 443 LRLGPWRRLLRLVLPGAAPSVFAGLRLALIYAWLGTIGAEYFMpSDGGIGSLMIGAQQLFRMDLIGAGMLLVGLTGALLN 522
Cdd:COG0600 162 LGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLG-ASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLD 240

                       250
                ....*....|....
gi 15595383 523 ALGQRIEARATRWR 536
Cdd:COG0600 241 LLLRLLERRLLRWR 254
 
Name Accession Description Interval E-value
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 50-274 1.33e-54

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 184.58  E-value: 1.33e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  50 VASHRHWMSAQVLPTPELVWQSARELLA-GELWSELAISLRRLAWGLLAGVASGAALGAWLGFSPRAERLVFPTFSALAQ 128
Cdd:COG0600  28 LAARLGLVPPFLLPSPSAVLAALVELLAsGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLRRLLDPLLVFLRP 107

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 129 IPTLAWIPLFMLFFGIGELLKLVVLVKAVVVPVTIHTLVGVRDAQPKLREAAAVLRLPPRLLVWRLILPAALPAFLTGLR 208
Cdd:COG0600 108 IPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLR 187

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15595383 209 LALAQGWTSLLAVELLASSEGIGYLMVQGRQLFMLDIVFVCILIIGLVGVGMDRAIQWLDRRLLHW 274
Cdd:COG0600 188 IALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRLLERRLLRW 253
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 283-536 7.75e-51

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 174.57  E-value: 7.75e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 283 RRRPPGRGWQRLQVWLPPLALLLLWQSASSAEWVDPAILASPLEVARATWSGALDGSLPGALFDSLKRTLGGLLLGGGLG 362
Cdd:COG0600   2 TTSTRRRLRRLLLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVELLASGELWEHLLASLLRVLLGFALAALLG 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 363 FLGGLLLGLWRPAERFFGPTFAALRQVAIFAWVPLLTAWFGLGEPAKLTFVAIAAFFPLLLATQRGIASLPPSLGEAARV 442
Cdd:COG0600  82 VPLGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARS 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 443 LRLGPWRRLLRLVLPGAAPSVFAGLRLALIYAWLGTIGAEYFMpSDGGIGSLMIGAQQLFRMDLIGAGMLLVGLTGALLN 522
Cdd:COG0600 162 LGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLG-ASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLD 240

                       250
                ....*....|....
gi 15595383 523 ALGQRIEARATRWR 536
Cdd:COG0600 241 LLLRLLERRLLRWR 254
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
50-277 5.91e-30

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 118.11  E-value: 5.91e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383   50 VASHRHWMSAQVLPTPELVWQSARELLA-GELWSELAISLRRLAWGLLAGVASGAALGAWLGFSPRAERLVFPTFSALAQ 128
Cdd:PRK11365  27 LASSVGWLSTRILPSPEGVVTAFWTLSAsGELWQHLAISSWRALIGFSIGGSLGLILGLISGLSRWGERLLDTSIQMLRN 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  129 IPTLAWIPLFMLFFGIGELLKLVVLVKAVVVPVTIHTLVGVRDAQPKLREAAAVLRLPPRLLVWRLILPAALPAFLTGLR 208
Cdd:PRK11365 107 VPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVR 186

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15595383  209 LALAQGWTSLLAVELLASSEGIGYLMVQGRQLFMLDIVFVCILIIGLVGVGMDRAIQWLDRRLLHWPQA 277
Cdd:PRK11365 187 FALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQLLERLWLRWNPA 255
ABC_perm_U NF040733
ABC transporter permease subunit SaoP; SaoP, one of the nine proteins of the SAO ...
 373-538 7.76e-27

ABC transporter permease subunit SaoP; SaoP, one of the nine proteins of the SAO (selenocysteine-associated organometallic) locus, is nearly always a selenoprotein, and is one of six novel selenoprotein families from that locus. The Sec (U) residue occurs at a position described in other ABC transporter permease homodimers as the channel-gating position. A role in importing (and perhaps even forming) organometallic compounds, in a cycle in which the metal atom is reexported and reused, as a cofactor that aids in utilization of some otherwise refractory substrate, has been suggested. The SAO system occurs in Clostridium difficile (a human gut pathogen), Brachyspira pilosicoli (an intestinal spirochete in chicken), Desulfopila aestuarii (a deltaproteobacterial sulfate reducer from estuary sediment), etc.


Pssm-ID: 468697  Cd Length: 251  Bit Score: 108.93  E-value: 7.76e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  373 RPAERFFGPTFAALRQVAIFAWVPLLTAWFGLGEPAKLTFVAIAAFFPLLLATQRGIASLPPSLGEAARVLRLGPWRRLL 452
Cdd:NF040733  87 KTALKLISPIIDSLRQVPIMAWVPLTIVWFGIGDGPTIFLIAFSGVFPIILNTIAGVQNISKDYYNAARSMGAGPLSIFK 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  453 RLVLPGAAPSVFAGLRLALIYAWLGTIGAEyFMPSDGGIGSLMIGAQQLFRMDLIGAGMLLVGLTGALLNALGQRIEARA 532
Cdd:NF040733 167 DIIVPASLPDILTGARLAISLGWMSVIUAE-FIATSAGFGYSMVEAQTRMQTDKLIALMIMAALVGFGIDRILQLLNKSL 245


                 ....*.
gi 15595383  533 TRWRHA 538
Cdd:NF040733 246 TKWRYV 251
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
287-538 1.32e-24

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 103.09  E-value: 1.32e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  287 PGRGW-QRLQVWLPPLALLLLWQSASSAEWVDPAILASPLEVARATWSGALDGSLPGALFDSLKRTLGGLLLGGGLGFLG 365
Cdd:PRK11365   4 PVKKWlLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRALIGFSIGGSLGLIL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  366 GLLLGLWRPAERFFGPTFAALRQVAIFAWVPLLTAWFGLGEPAKLTFVAIAAFFPLLLATQRGIASLPPSLGEAARVLRL 445
Cdd:PRK11365  84 GLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  446 GPWRRLLRLVLPGAAPSVFAGLRLALIYAWLGTIGAEYfMPSDGGIGSLMIGAQQLFRMDLIGAGMLLVGLTGALLNALG 525
Cdd:PRK11365 164 SGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAET-ISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSA 242

                        250
                 ....*....|...
gi 15595383  526 QRIEARATRWRHA 538
Cdd:PRK11365 243 QLLERLWLRWNPA 255
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 389-528 1.75e-14

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 71.95  E-value: 1.75e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383   389 VAIFAWVPLLTAWFGLGEPAKLTFVAIAAFFPLLLATQRGIASLPPSLGEAARVLRLGPWRRLLRLVLPGAAPSVFAGLR 468
Cdd:pfam00528  35 LAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLA 114

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383   469 LALIYAWLGTIGAEYFMpSDGGIGSLMIGAQQLFRMDLIGAGMLLVGLTGALLNALGQRI 528
Cdd:pfam00528 115 LAFGGALGGAVLLEFLG-SWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDIL 173
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 102-273 3.09e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 62.32  E-value: 3.09e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383   102 GAALGAWLGFSP--RAERLVFPTFSALAQIPTLAWIPLF-----MLFFGIGELLKLVVLVKAVVVPVTIHTLVGVRDAQP 174
Cdd:pfam00528   1 GIPLGIIAALRRgrRLDRLLRPLIDLLQALPSFVLAILLvviaiLSILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383   175 KLREAAAVLRLPPRLLVWRLILPAALPAFLTGLRLALAQGWTSLLAVELLASSEGIGYLMVQGRQLFMLD----IVFVCI 250
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPeiqgPVLAAA 160

                         170       180
                  ....*....|....*....|...
gi 15595383   251 LIIGLVGVGMDRAIQWLDRRLLH 273
Cdd:pfam00528 161 LILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 389-517 1.06e-06

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 49.20  E-value: 1.06e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 389 VAIFAWVPLLTAWFGLGEPAKLTFVAIAAFFpLLLATQRGIASLPPSLGEAARVLRLGPWRRLLRLVLPGAAPSVFAGLR 468
Cdd:cd06261  57 VLLFGVLLGWGILPGLGLPALILALLLIAPF-ARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLV 135

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 15595383 469 LALIYAWLGTIGAEY-FMPSDGGIGSLMIGAQQLFRMDLIGAGMLLVGLT 517
Cdd:cd06261 136 LAFARALGEFALVSFlGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALIL 185
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 84-258 1.37e-06

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 48.81  E-value: 1.37e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  84 LAISLRRLAWGLLAGVASGAALGAWLGFS-PRAERLVFPTFSALAQIPTLAWIPLFMLFFGIGELLKLVVLVKAV----- 157
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKrGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPalila 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 158 ----VVPVTIHTLVGVRDAQPKLREAAAVLRLPPRLLVWRLILPAALPAFLTGLRLALAQGWTSLLAVELLASSE----G 229
Cdd:cd06261  81 llliAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEapgpG 160

                       170       180
                ....*....|....*....|....*....
gi 15595383 230 IGYLMVQGRQLFMLDIVFVCILIIGLVGV 258
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
 
Name Accession Description Interval E-value
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 50-274 1.33e-54

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 184.58  E-value: 1.33e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  50 VASHRHWMSAQVLPTPELVWQSARELLA-GELWSELAISLRRLAWGLLAGVASGAALGAWLGFSPRAERLVFPTFSALAQ 128
Cdd:COG0600  28 LAARLGLVPPFLLPSPSAVLAALVELLAsGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLRRLLDPLLVFLRP 107

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 129 IPTLAWIPLFMLFFGIGELLKLVVLVKAVVVPVTIHTLVGVRDAQPKLREAAAVLRLPPRLLVWRLILPAALPAFLTGLR 208
Cdd:COG0600 108 IPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLR 187

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15595383 209 LALAQGWTSLLAVELLASSEGIGYLMVQGRQLFMLDIVFVCILIIGLVGVGMDRAIQWLDRRLLHW 274
Cdd:COG0600 188 IALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRLLERRLLRW 253
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 283-536 7.75e-51

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 174.57  E-value: 7.75e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 283 RRRPPGRGWQRLQVWLPPLALLLLWQSASSAEWVDPAILASPLEVARATWSGALDGSLPGALFDSLKRTLGGLLLGGGLG 362
Cdd:COG0600   2 TTSTRRRLRRLLLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVELLASGELWEHLLASLLRVLLGFALAALLG 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 363 FLGGLLLGLWRPAERFFGPTFAALRQVAIFAWVPLLTAWFGLGEPAKLTFVAIAAFFPLLLATQRGIASLPPSLGEAARV 442
Cdd:COG0600  82 VPLGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARS 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 443 LRLGPWRRLLRLVLPGAAPSVFAGLRLALIYAWLGTIGAEYFMpSDGGIGSLMIGAQQLFRMDLIGAGMLLVGLTGALLN 522
Cdd:COG0600 162 LGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLG-ASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLD 240

                       250
                ....*....|....
gi 15595383 523 ALGQRIEARATRWR 536
Cdd:COG0600 241 LLLRLLERRLLRWR 254
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
50-277 5.91e-30

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 118.11  E-value: 5.91e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383   50 VASHRHWMSAQVLPTPELVWQSARELLA-GELWSELAISLRRLAWGLLAGVASGAALGAWLGFSPRAERLVFPTFSALAQ 128
Cdd:PRK11365  27 LASSVGWLSTRILPSPEGVVTAFWTLSAsGELWQHLAISSWRALIGFSIGGSLGLILGLISGLSRWGERLLDTSIQMLRN 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  129 IPTLAWIPLFMLFFGIGELLKLVVLVKAVVVPVTIHTLVGVRDAQPKLREAAAVLRLPPRLLVWRLILPAALPAFLTGLR 208
Cdd:PRK11365 107 VPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVR 186

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15595383  209 LALAQGWTSLLAVELLASSEGIGYLMVQGRQLFMLDIVFVCILIIGLVGVGMDRAIQWLDRRLLHWPQA 277
Cdd:PRK11365 187 FALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQLLERLWLRWNPA 255
ABC_perm_U NF040733
ABC transporter permease subunit SaoP; SaoP, one of the nine proteins of the SAO ...
 373-538 7.76e-27

ABC transporter permease subunit SaoP; SaoP, one of the nine proteins of the SAO (selenocysteine-associated organometallic) locus, is nearly always a selenoprotein, and is one of six novel selenoprotein families from that locus. The Sec (U) residue occurs at a position described in other ABC transporter permease homodimers as the channel-gating position. A role in importing (and perhaps even forming) organometallic compounds, in a cycle in which the metal atom is reexported and reused, as a cofactor that aids in utilization of some otherwise refractory substrate, has been suggested. The SAO system occurs in Clostridium difficile (a human gut pathogen), Brachyspira pilosicoli (an intestinal spirochete in chicken), Desulfopila aestuarii (a deltaproteobacterial sulfate reducer from estuary sediment), etc.


Pssm-ID: 468697  Cd Length: 251  Bit Score: 108.93  E-value: 7.76e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  373 RPAERFFGPTFAALRQVAIFAWVPLLTAWFGLGEPAKLTFVAIAAFFPLLLATQRGIASLPPSLGEAARVLRLGPWRRLL 452
Cdd:NF040733  87 KTALKLISPIIDSLRQVPIMAWVPLTIVWFGIGDGPTIFLIAFSGVFPIILNTIAGVQNISKDYYNAARSMGAGPLSIFK 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  453 RLVLPGAAPSVFAGLRLALIYAWLGTIGAEyFMPSDGGIGSLMIGAQQLFRMDLIGAGMLLVGLTGALLNALGQRIEARA 532
Cdd:NF040733 167 DIIVPASLPDILTGARLAISLGWMSVIUAE-FIATSAGFGYSMVEAQTRMQTDKLIALMIMAALVGFGIDRILQLLNKSL 245


                 ....*.
gi 15595383  533 TRWRHA 538
Cdd:NF040733 246 TKWRYV 251
PRK10160 PRK10160
taurine ABC transporter permease TauC;
56-274 2.34e-26

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 108.33  E-value: 2.34e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383   56 WMSAQVLPTPELVWQ------SARELLAGELWSELAISLRRLAWGLLAGVASGAALGAWLGFSPRAERLVFPTFSALAQI 129
Cdd:PRK10160  46 LISPLFLPPPQQVLAklltiaGPQGFMDATLWQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTVRGILDPLIELYRPV 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  130 PTLAWIPLFMLFFGIGELLKLVVLVKAVVVPVTIHTLVGVRDAQPKLREAAAVLRLPPRLLVWRLILPAALPAFLTGLRL 209
Cdd:PRK10160 126 PPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRI 205

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15595383  210 ALAQGWTSLLAVELLASSEGIGYLMVQGRQLFMLDIVFVCILIIGLVGVGMDRAIQWLDRRLLHW 274
Cdd:PRK10160 206 GLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTPW 270
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
287-538 1.32e-24

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 103.09  E-value: 1.32e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  287 PGRGW-QRLQVWLPPLALLLLWQSASSAEWVDPAILASPLEVARATWSGALDGSLPGALFDSLKRTLGGLLLGGGLGFLG 365
Cdd:PRK11365   4 PVKKWlLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRALIGFSIGGSLGLIL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  366 GLLLGLWRPAERFFGPTFAALRQVAIFAWVPLLTAWFGLGEPAKLTFVAIAAFFPLLLATQRGIASLPPSLGEAARVLRL 445
Cdd:PRK11365  84 GLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  446 GPWRRLLRLVLPGAAPSVFAGLRLALIYAWLGTIGAEYfMPSDGGIGSLMIGAQQLFRMDLIGAGMLLVGLTGALLNALG 525
Cdd:PRK11365 164 SGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAET-ISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSA 242

                        250
                 ....*....|...
gi 15595383  526 QRIEARATRWRHA 538
Cdd:PRK11365 243 QLLERLWLRWNPA 255
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 389-528 1.75e-14

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 71.95  E-value: 1.75e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383   389 VAIFAWVPLLTAWFGLGEPAKLTFVAIAAFFPLLLATQRGIASLPPSLGEAARVLRLGPWRRLLRLVLPGAAPSVFAGLR 468
Cdd:pfam00528  35 LAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLA 114

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383   469 LALIYAWLGTIGAEYFMpSDGGIGSLMIGAQQLFRMDLIGAGMLLVGLTGALLNALGQRI 528
Cdd:pfam00528 115 LAFGGALGGAVLLEFLG-SWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDIL 173
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 389-536 3.62e-13

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 68.54  E-value: 3.62e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 389 VAIFAwvpLLTAWFGLGEPAKLTFVAIAAFFPLLLATQRGIASLPPSLGEAARVLRLGPWRRLLRLVLPGAAPSVFAGLR 468
Cdd:COG1174  68 LALLA---LLIPLLGIGPAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIR 144

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15595383 469 LALIYAW-LGTIGAeyfMPSDGGIGSLMIGAQQLFRMDLIGAGMLLVGLTGALLNALGQRIEARATRWR 536
Cdd:COG1174 145 TAAVQNIgTATLAA---LIGAGGLGDLIFDGLQLNNTALILAGAILVALLALLVDLLLALLERLLTPRG 210
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 69-274 3.32e-12

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 65.85  E-value: 3.32e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  69 WQSARELLAGELWSELAISLrrlaWGLLAGVASGAALGAWLGFSPRAERLVFPTFSALAQIPTLAWIPLFMLFFGIGELL 148
Cdd:COG1174   9 LADNRDGILALLLEHLLLVL----LALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAP 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 149 KLVVLVKAVVVPVTIHTLVGVRDAQPKLREAAAVLRLPPRLLVWRLILPAALPAFLTGLRLALAQ--GWTSLLAvelLAS 226
Cdd:COG1174  85 AIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQniGTATLAA---LIG 161

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 15595383 227 SEGIGYLMVQGRQLFMLDIVFVCILIIGLVGVGMDRAIQWLDRRLLHW 274
Cdd:COG1174 162 AGGLGDLIFDGLQLNNTALILAGAILVALLALLVDLLLALLERLLTPR 209
PRK10160 PRK10160
taurine ABC transporter permease TauC;
307-535 1.84e-11

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 64.81  E-value: 1.84e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  307 WQSASSAEWVDPAILASPLEVARATWS-----GALDGSLPGALFDSLKRTLGGLLLGGGLGFLGGLLLGLWRPAERFFGP 381
Cdd:PRK10160  38 WWAVAALQLISPLFLPPPQQVLAKLLTiagpqGFMDATLWQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTVRGILDP 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  382 TFAALRQVAIFAWVPLLTAWFGLGEPAKLTFVAIAAFFPLLLATQRGIASLPPSLGEAARVLRLGPWRRLLRLVLPGAAP 461
Cdd:PRK10160 118 LIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALP 197

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15595383  462 SVFAGLRLALIYAWLGTIGAEyFMPSDGGIGSLMIGAQQLFRMDLIGAGMLLVGLTGALLNALGQRIEARATRW 535
Cdd:PRK10160 198 EILTGLRIGLGVGWSTLVAAE-LIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTPW 270
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 102-273 3.09e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 62.32  E-value: 3.09e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383   102 GAALGAWLGFSP--RAERLVFPTFSALAQIPTLAWIPLF-----MLFFGIGELLKLVVLVKAVVVPVTIHTLVGVRDAQP 174
Cdd:pfam00528   1 GIPLGIIAALRRgrRLDRLLRPLIDLLQALPSFVLAILLvviaiLSILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383   175 KLREAAAVLRLPPRLLVWRLILPAALPAFLTGLRLALAQGWTSLLAVELLASSEGIGYLMVQGRQLFMLD----IVFVCI 250
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPeiqgPVLAAA 160

                         170       180
                  ....*....|....*....|...
gi 15595383   251 LIIGLVGVGMDRAIQWLDRRLLH 273
Cdd:pfam00528 161 LILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 389-517 1.06e-06

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 49.20  E-value: 1.06e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 389 VAIFAWVPLLTAWFGLGEPAKLTFVAIAAFFpLLLATQRGIASLPPSLGEAARVLRLGPWRRLLRLVLPGAAPSVFAGLR 468
Cdd:cd06261  57 VLLFGVLLGWGILPGLGLPALILALLLIAPF-ARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLV 135

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 15595383 469 LALIYAWLGTIGAEY-FMPSDGGIGSLMIGAQQLFRMDLIGAGMLLVGLT 517
Cdd:cd06261 136 LAFARALGEFALVSFlGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALIL 185
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 84-258 1.37e-06

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 48.81  E-value: 1.37e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  84 LAISLRRLAWGLLAGVASGAALGAWLGFS-PRAERLVFPTFSALAQIPTLAWIPLFMLFFGIGELLKLVVLVKAV----- 157
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKrGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPalila 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 158 ----VVPVTIHTLVGVRDAQPKLREAAAVLRLPPRLLVWRLILPAALPAFLTGLRLALAQGWTSLLAVELLASSE----G 229
Cdd:cd06261  81 llliAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEapgpG 160

                       170       180
                ....*....|....*....|....*....
gi 15595383 230 IGYLMVQGRQLFMLDIVFVCILIIGLVGV 258
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
PksD COG3321
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...
 26-532 2.80e-05

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442550 [Multi-domain]  Cd Length: 1386  Bit Score: 47.17  E-value: 2.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383   26 AFARRLGDGLLPWLLPLGLALLWWvashrhwmsAQVLPTPELVWQSARELLAGELWSELAISLRRLAWGLLAGVASGAAL 105
Cdd:COG3321  867 PFQREDAAAALLAAALAAALAAAA---------ALGALLLAALAAALAAALLALAAAAAAALALAAAALAALLALVALAA 937

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  106 GAWLGFSPRAERLVFPTFSALAQIPTLAWIPLFMLFFGIGELLKLVVLVKAVVVPVTIHTLVGVRDAQPKLREAAAVLRL 185
Cdd:COG3321  938 AAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAAAALLLAAAAA 1017

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  186 PPRLLVWRLILPAALPAFLTGLRLALAQGWTSLLAVELLASSEGIGYLMVQGRQLFMLDIVFVCILIIGLVGVGMDRAIQ 265
Cdd:COG3321 1018 AAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALAAALAAAALAL 1097

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  266 WLDRRLLHWPQAATGEFRRRPPGRGWQRLQVWLPPLALLLLWQSASSAEWVDPAILASPLEVARATWSGALDGSLPGALF 345
Cdd:COG3321 1098 ALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAALLLAL 1177

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  346 DSLKRTLGGLLLGGGLGFLGGLLLGLWRPAERFFGPTFAALRQVAI----FAWVPLLTAWFGLGEPAKLTFVAIAAFFPL 421
Cdd:COG3321 1178 ALALAAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALlaaaAAAAALALLALAAAAAAVAALAAAAAALLA 1257

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383  422 LLATQRGIASLPPSLGEAARVLRLGPWRRLLRLVLPGAAPSVFAGLRLALIYAWLGTIGAEYFMPSDGGIGSLMIGAQQL 501
Cdd:COG3321 1258 ALAALALLAAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAALLAAALAALAAAV 1337

                        490       500       510
                 ....*....|....*....|....*....|.
gi 15595383  502 FRMDLIGAGMLLVGLTGALLNALGQRIEARA 532
Cdd:COG3321 1338 AAALALAAAAAAAAAAAAAAAAAAALAAAAG 1368
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
81-212 3.04e-05

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 46.24  E-value: 3.04e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383   81 WSELAISLRRLAWGLLAGVASGAALGAWLGFSPRAERLVFPTFSALAQIPTLAW-IPLFMLfFGIGELLKLVVLVKAVVV 159
Cdd:PRK10952 143 WSQAMVTLALVLTALLFCIVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYlVPIVML-FGIGNVPGVVVTIIFALP 221

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 15595383  160 PVTIHTLVGVRDAQPKLREAAAVLRLPPRLLVWRLILPAALPAFLTG----LRLALA 212
Cdd:PRK10952 222 PIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGvnqtLMLALS 278
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
397-474 4.91e-05

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 45.92  E-value: 4.91e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 397 LLTAWFGLGEPAKLTFVAIA-----AFFPL-LLATQRGIASLPPSLGEAARVLRLGPWRRLLRLVLPGAAPSVFAGLRLA 470
Cdd:COG1178 124 LLRALFGLEPPDIYGLGGIIlvlvlFNYPYvYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLV 203


                ....
gi 15595383 471 LIYA 474
Cdd:COG1178 204 FLLC 207
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
415-481 1.69e-03

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 40.91  E-value: 1.69e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15595383 415 IAAFFPLLLATQR-GIASLPPSLGEAARVLRLGPWRRLLRLVLPGAAPSVFAGLRLALIYAwLGTIGA 481
Cdd:COG1178 419 VVRFLPFALRSLEaALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTS-MKELSA 485
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 430-475 5.86e-03

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 38.55  E-value: 5.86e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15595383 430 ASLPPSLGEAARVLRLGPWRRLLRLVLPGAAPSVFAGLRLALIYAW 475
Cdd:COG1177 155 QGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSF 200
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 389-536 6.32e-03

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 38.59  E-value: 6.32e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 389 VAIFAWVPLLT---------AWFGL-GEPAKLTF----VAIA---AFFPL-LLATQRGIASLPPSLGEAARVLRLGPWRR 450
Cdd:COG1176 119 VRTYAWIVLLGrngllnsllLALGLiDEPLRLLYtefaVVIGlvyVYLPFmVLPLYAALEKIDPSLLEAARDLGASPWQT 198

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595383 451 LLRLVLPGAAPSVFAGLRLALIYAwLGTIGAEYFMpsdGGIGSLMIG---AQQLFRMDLIGAG----MLLVGLTGALLnA 523
Cdd:COG1176 199 FRRVILPLSLPGIIAGSLLVFIPA-LGAFVTPALL---GGGKVLMIGnliYQQFLSALNWPLAaalaVVLLLIVLLVL-L 273

                       170
                ....*....|...
gi 15595383 524 LGQRIEARATRWR 536
Cdd:COG1176 274 LYLRLLRRRRLLG 286
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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