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Conserved domains on  [gi|15595453|ref|NP_248947|]
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hypothetical protein PA0256 [Pseudomonas aeruginosa PAO1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4347 super family cl16748
Domain of unknown function (DUF4347); This domain family is found in bacteria and eukaryotes, ...
 178-250 1.45e-05

Domain of unknown function (DUF4347); This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.


The actual alignment was detected with superfamily member pfam14252:

Pssm-ID: 433811  Cd Length: 164  Bit Score: 44.43  E-value: 1.45e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15595453   178 IDTILIATHGTAGQLWLGNphGDSTADVMARRvqgkqfvepqafgATLLELFGKELA----IALYGCDFAGDEDGEA 250
Cdd:pfam14252  47 IDAIHIVSHGSPGSLQLGN--TQLNADTLAAY-------------AAELAQWGQALSedgdILLYGCNVAAGEAGEA 108
 
Name Accession Description Interval E-value
DUF4347 pfam14252
Domain of unknown function (DUF4347); This domain family is found in bacteria and eukaryotes, ...
 178-250 1.45e-05

Domain of unknown function (DUF4347); This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.


Pssm-ID: 433811  Cd Length: 164  Bit Score: 44.43  E-value: 1.45e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15595453   178 IDTILIATHGTAGQLWLGNphGDSTADVMARRvqgkqfvepqafgATLLELFGKELA----IALYGCDFAGDEDGEA 250
Cdd:pfam14252  47 IDAIHIVSHGSPGSLQLGN--TQLNADTLAAY-------------AAELAQWGQALSedgdILLYGCNVAAGEAGEA 108
 
Name Accession Description Interval E-value
DUF4347 pfam14252
Domain of unknown function (DUF4347); This domain family is found in bacteria and eukaryotes, ...
 178-250 1.45e-05

Domain of unknown function (DUF4347); This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.


Pssm-ID: 433811  Cd Length: 164  Bit Score: 44.43  E-value: 1.45e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15595453   178 IDTILIATHGTAGQLWLGNphGDSTADVMARRvqgkqfvepqafgATLLELFGKELA----IALYGCDFAGDEDGEA 250
Cdd:pfam14252  47 IDAIHIVSHGSPGSLQLGN--TQLNADTLAAY-------------AAELAQWGQALSedgdILLYGCNVAAGEAGEA 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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