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Conserved domains on  [gi|15595577|ref|NP_249071|]
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sulfur carrier protein ThiS [Pseudomonas aeruginosa PAO1]

Protein Classification

sulfur carrier protein ThiS( domain architecture ID 10005294)

sulfur carrier protein ThiS is the sulfur donor in the synthesis of the thiazole phosphate moiety of thiamine phosphate

CATH:  3.10.20.30
Gene Symbol:  thiS
SCOP:  4000981

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ThiS COG2104
Sulfur carrier protein ThiS (thiamine biosynthesis) [Coenzyme transport and metabolism]; ...
1-66 4.48e-33

Sulfur carrier protein ThiS (thiamine biosynthesis) [Coenzyme transport and metabolism]; Sulfur carrier protein ThiS (thiamine biosynthesis) is part of the Pathway/BioSystem: Thiamine biosynthesis


:

Pssm-ID: 441707 [Multi-domain]  Cd Length: 66  Bit Score: 107.85  E-value: 4.48e-33
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15595577  1 MQIQLNGEPFELPDAQSVADLLARLELGGRRVAVELNLDIVPRSQHASTALKDGDRVEIVHAIGGG 66
Cdd:COG2104  1 MKITVNGEPREVPEGTTLADLLEELGLDPKGVAVAVNGEIVPRSQWASTVLKEGDRVEIVTAVGGG 66
 
Name Accession Description Interval E-value
ThiS COG2104
Sulfur carrier protein ThiS (thiamine biosynthesis) [Coenzyme transport and metabolism]; ...
1-66 4.48e-33

Sulfur carrier protein ThiS (thiamine biosynthesis) [Coenzyme transport and metabolism]; Sulfur carrier protein ThiS (thiamine biosynthesis) is part of the Pathway/BioSystem: Thiamine biosynthesis


Pssm-ID: 441707 [Multi-domain]  Cd Length: 66  Bit Score: 107.85  E-value: 4.48e-33
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15595577  1 MQIQLNGEPFELPDAQSVADLLARLELGGRRVAVELNLDIVPRSQHASTALKDGDRVEIVHAIGGG 66
Cdd:COG2104  1 MKITVNGEPREVPEGTTLADLLEELGLDPKGVAVAVNGEIVPRSQWASTVLKEGDRVEIVTAVGGG 66
Ubl_ThiS cd00565
ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS; ThiS, also termed Thiamine ...
3-66 2.42e-28

ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS; ThiS, also termed Thiamine biosynthesis protein (ThiaminS), is a sulfur carrier protein involved in thiamin biosynthesis in prokaryotes. It has the beta-grasp ubiquitin-like (Ubl) fold with low sequence similarity to ubiquitin (Ub), and is activated in an ATP-dependent manner by sulfurtransferases, similar to the activation mechanism of Ub-activating enzyme E1. ThiS has common evolutionary origin with Ub-related protein modifiers in eukaryotes, a beta-grasp fold as Ub, and is closely related to proteins MoaD and Urm1.


Pssm-ID: 340451 [Multi-domain]  Cd Length: 64  Bit Score: 95.65  E-value: 2.42e-28
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15595577  3 IQLNGEPFELPDAQSVADLLARLELGGRRVAVELNLDIVPRSQHASTALKDGDRVEIVHAIGGG 66
Cdd:cd00565  1 ITVNGEPREVDEGLTLAELLEELGFTPKGVAVELNGEIVPRSEWAETILKDGDRIEIVTFVGGG 64
thiS TIGR01683
thiamine biosynthesis protein ThiS; This model represents ThiS, a small, ubiquitin-like ...
3-66 2.67e-26

thiamine biosynthesis protein ThiS; This model represents ThiS, a small, ubiquitin-like thiamine biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]


Pssm-ID: 273754 [Multi-domain]  Cd Length: 64  Bit Score: 90.70  E-value: 2.67e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15595577    3 IQLNGEPFELPDAQSVADLLARLELGGRRVAVELNLDIVPRSQHASTALKDGDRVEIVHAIGGG 66
Cdd:TIGR01683  1 ITVNGEPVEVEDGTTLAALLESLGLDPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTFVGGG 64
PRK11840 PRK11840
bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
1-66 5.24e-24

bifunctional sulfur carrier protein/thiazole synthase protein; Provisional


Pssm-ID: 236998 [Multi-domain]  Cd Length: 326  Bit Score: 90.96  E-value: 5.24e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15595577    1 MQIQLNGEPFELPDAQSVADLLARLELGGRRVAVELNLDIVPRSQHASTALKDGDRVEIVHAIGGG 66
Cdd:PRK11840   1 MRIRLNGEPRQVPAGLTIAALLAELGLAPKKVAVERNLEIVPRSEYGQVALEEGDELEIVHFVGGG 66
ThiS pfam02597
ThiS family; ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in ...
3-66 2.41e-14

ThiS family; ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in E. coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalyzed by IscS. MoaD, a protein involved sulphur transfer in molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.


Pssm-ID: 396932 [Multi-domain]  Cd Length: 74  Bit Score: 60.76  E-value: 2.41e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15595577    3 IQLNGEPFEL-------PDAQSVADLLARLELGG----RRVAVELNLDIVPRsQHASTALKDGDRVEIVHAIGGG 66
Cdd:pfam02597  1 VLLNAELRELagkdeelAEGATVAELLEALGLRYpelrERVAVAVNGEIVPR-LWLDTPLKDGDEVAIIPPVGGG 74
 
Name Accession Description Interval E-value
ThiS COG2104
Sulfur carrier protein ThiS (thiamine biosynthesis) [Coenzyme transport and metabolism]; ...
1-66 4.48e-33

Sulfur carrier protein ThiS (thiamine biosynthesis) [Coenzyme transport and metabolism]; Sulfur carrier protein ThiS (thiamine biosynthesis) is part of the Pathway/BioSystem: Thiamine biosynthesis


Pssm-ID: 441707 [Multi-domain]  Cd Length: 66  Bit Score: 107.85  E-value: 4.48e-33
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15595577  1 MQIQLNGEPFELPDAQSVADLLARLELGGRRVAVELNLDIVPRSQHASTALKDGDRVEIVHAIGGG 66
Cdd:COG2104  1 MKITVNGEPREVPEGTTLADLLEELGLDPKGVAVAVNGEIVPRSQWASTVLKEGDRVEIVTAVGGG 66
Ubl_ThiS cd00565
ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS; ThiS, also termed Thiamine ...
3-66 2.42e-28

ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS; ThiS, also termed Thiamine biosynthesis protein (ThiaminS), is a sulfur carrier protein involved in thiamin biosynthesis in prokaryotes. It has the beta-grasp ubiquitin-like (Ubl) fold with low sequence similarity to ubiquitin (Ub), and is activated in an ATP-dependent manner by sulfurtransferases, similar to the activation mechanism of Ub-activating enzyme E1. ThiS has common evolutionary origin with Ub-related protein modifiers in eukaryotes, a beta-grasp fold as Ub, and is closely related to proteins MoaD and Urm1.


Pssm-ID: 340451 [Multi-domain]  Cd Length: 64  Bit Score: 95.65  E-value: 2.42e-28
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15595577  3 IQLNGEPFELPDAQSVADLLARLELGGRRVAVELNLDIVPRSQHASTALKDGDRVEIVHAIGGG 66
Cdd:cd00565  1 ITVNGEPREVDEGLTLAELLEELGFTPKGVAVELNGEIVPRSEWAETILKDGDRIEIVTFVGGG 64
thiS TIGR01683
thiamine biosynthesis protein ThiS; This model represents ThiS, a small, ubiquitin-like ...
3-66 2.67e-26

thiamine biosynthesis protein ThiS; This model represents ThiS, a small, ubiquitin-like thiamine biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]


Pssm-ID: 273754 [Multi-domain]  Cd Length: 64  Bit Score: 90.70  E-value: 2.67e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15595577    3 IQLNGEPFELPDAQSVADLLARLELGGRRVAVELNLDIVPRSQHASTALKDGDRVEIVHAIGGG 66
Cdd:TIGR01683  1 ITVNGEPVEVEDGTTLAALLESLGLDPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTFVGGG 64
PRK11840 PRK11840
bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
1-66 5.24e-24

bifunctional sulfur carrier protein/thiazole synthase protein; Provisional


Pssm-ID: 236998 [Multi-domain]  Cd Length: 326  Bit Score: 90.96  E-value: 5.24e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15595577    1 MQIQLNGEPFELPDAQSVADLLARLELGGRRVAVELNLDIVPRSQHASTALKDGDRVEIVHAIGGG 66
Cdd:PRK11840   1 MRIRLNGEPRQVPAGLTIAALLAELGLAPKKVAVERNLEIVPRSEYGQVALEEGDELEIVHFVGGG 66
ThiS pfam02597
ThiS family; ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in ...
3-66 2.41e-14

ThiS family; ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in E. coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalyzed by IscS. MoaD, a protein involved sulphur transfer in molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.


Pssm-ID: 396932 [Multi-domain]  Cd Length: 74  Bit Score: 60.76  E-value: 2.41e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15595577    3 IQLNGEPFEL-------PDAQSVADLLARLELGG----RRVAVELNLDIVPRsQHASTALKDGDRVEIVHAIGGG 66
Cdd:pfam02597  1 VLLNAELRELagkdeelAEGATVAELLEALGLRYpelrERVAVAVNGEIVPR-LWLDTPLKDGDEVAIIPPVGGG 74
MoaD COG1977
Molybdopterin synthase sulfur carrier subunit MoaD [Coenzyme transport and metabolism]; ...
8-66 6.60e-06

Molybdopterin synthase sulfur carrier subunit MoaD [Coenzyme transport and metabolism]; Molybdopterin synthase sulfur carrier subunit MoaD is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 441580 [Multi-domain]  Cd Length: 82  Bit Score: 39.42  E-value: 6.60e-06
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15595577  8 EPFELPDAQSVADLLARLE---------LGGRRVAVELNLDIVPRSqhasTALKDGDRVEIVHAIGGG 66
Cdd:COG1977 19 EEVELPEGATVGDLLEALAarypglaerLLRRRVRVAVNGEDVRLD----TPLKDGDEVALFPPVAGG 82
PLN02799 PLN02799
Molybdopterin synthase sulfur carrier subunit
5-66 1.52e-04

Molybdopterin synthase sulfur carrier subunit


Pssm-ID: 215429  Cd Length: 82  Bit Score: 35.75  E-value: 1.52e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15595577   5 LNGEPFELPDAQSVADLLAR-------LELGGRRVAVELNLDIVPrsqhASTALKDGDRVEIVHAIGGG 66
Cdd:PLN02799 18 VSDMTLELPAGSTTADCLAElvakfpsLEEVRSCCVLALNEEYTT----ESAALKDGDELAIIPPISGG 82
Ubl_MoaD_like cd17040
ubiquitin-like (Ubl) domain found in a group of small sulfide carrier proteins; Ubiquitin-like ...
10-66 2.36e-04

ubiquitin-like (Ubl) domain found in a group of small sulfide carrier proteins; Ubiquitin-like (Ubl) domain found in a group of small sulfide carrier proteins This family includes ThiS, MoaD, CysO, QbsE, and their homologs, which are structurally homologous to ubiquitin (Ub) and may function as the sulfide donor for the biosynthesis of thiamin, molybdopterin, cysteine, thioquinolobactin, and other sulfur-containing natural products. Ub is a protein modifier in eukaryotes that is involved in various cellular processes, including transcriptional regulation, cell cycle control, and DNA repair. Ubiquitination is comprised of a cascade of E1, E2 and E3 enzymes that results in a covalent bond between the C-terminus of Ub and the epsilon-amino group of a substrate lysine. Like Ub, small sulfide carrier proteins in this family are adenylated at a diglycyl C-terminus by specific activating proteins. The adenylated C-terminus is subsequently converted to a thiocarboxylate, serving as the sulfide source. Those activating proteins are diverse and show little sequence similarity. This family also includes the small archaeal modifier protein (SAMP), including SAMP1, SAMP2 and SAMP3, which are Ub-like proteins that function as protein modifiers and are required for the production of sulfur-containing biomolecules in the archaeon Haloferax volcanii. SAMP1 and SAMP2 are involved in sulfur transfer during molybdenum cofactor biosynthesis and tRNA thiolation much like MoaD and Urm1, respectively. They can form covalent conjugates with their protein targets through an isopeptide linkage via their C-terminal diglycine motif in a streamlined archaeal E1-dependent pathway. SAMP2 also forms homo-conjugates through the intermolecular isopeptide bond between the C-terminal Gly and the Lys58 side chain, a feature that likely resembles polyubiquitination. SAMP3 conjugates are dependent on the Ub-activating E1 enzyme homolog of archaea (UbaA) for synthesis and are cleaved by the JAMM/MPN+ domain metalloprotease HvJAMM1.


Pssm-ID: 340560 [Multi-domain]  Cd Length: 88  Bit Score: 35.43  E-value: 2.36e-04
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15595577 10 FELPDAQSVADLLARL-----ELGGR---------RVAVELNLDIVPRSQHAsTALKDGDRVEIVHAIGGG 66
Cdd:cd17040 19 IEVEGGTTVRDLLDALserypGLFEAldedgelrpFILVFVNGRDVRLDDGL-TPLKDGDEVDILPPVAGG 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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