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Conserved domains on  [gi|15595611|ref|NP_249105|]
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methylesterase [Pseudomonas aeruginosa PAO1]

Protein Classification

chemotaxis protein CheB( domain architecture ID 11451324)

chemotaxis protein CheB is a protein-glutamate methylesterase which demethylates gamma-glutamyl methyl ester residues in chemoreceptor proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CheB COG2201
Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains ...
140-337 1.12e-55

Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains [Signal transduction mechanisms];


:

Pssm-ID: 441803  Cd Length: 193  Bit Score: 179.90  E-value: 1.12e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611 140 MPlqageaaREVWLLAASLGGPAAVKAFLDALPGGLPIGFLYAQHIDASFEQNLPQAVGRHSQWHVKNVRDGEALRCGEV 219
Cdd:COG2201   1 MP-------FKVVAIGASTGGPEALEEVLSALPADFPAPIVIVQHMPPGFTSSLAERLNRLTALPVKEAEDGERLEPGHV 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611 220 MVVPVLHELGFHHDG--RLKCSQRSWPEPYTPSIDQMMLNLAQQFGPDCGVIVFSGMGSDGSAAAAYVRRQGGEVWTQRA 297
Cdd:COG2201  74 YIAPGGRHLEVERSGgyRLRLSDGPPVNGHRPSVDVLFRSLAEVYGERAVGVILTGMGSDGAEGLKAIKEAGGLTIAQDE 153
                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 15595611 298 DSCVCSSMPDSLREAGYSSFNASPRELAEALVKHLAARCA 337
Cdd:COG2201 154 ESCVVYGMPRAAIEAGAVDEVLPLEEIAAALLRLLRRRAA 193
AmiR super family cl34660
Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding ...
8-88 5.38e-04

Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains [Signal transduction mechanisms, Transcription];


The actual alignment was detected with superfamily member COG3707:

Pssm-ID: 442921 [Multi-domain]  Cd Length: 194  Bit Score: 40.33  E-value: 5.38e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611   8 RVAVIADTSLQRHVLQQALLGHGYEVVLNA-DPARVDDAALECAPDLWLVDLTQQDDSPL--LDSLLEQDRAPV-LFGEG 83
Cdd:COG3707   5 RVLVVDDEPLRRADLREGLREAGYEVVAEAaDGEDAVELVRELKPDLVIVDIDMPDRDGLeaARQISEERPAPViLLTAY 84

                ....*
gi 15595611  84 HAPER 88
Cdd:COG3707  85 SDPEL 89
 
Name Accession Description Interval E-value
CheB COG2201
Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains ...
140-337 1.12e-55

Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains [Signal transduction mechanisms];


Pssm-ID: 441803  Cd Length: 193  Bit Score: 179.90  E-value: 1.12e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611 140 MPlqageaaREVWLLAASLGGPAAVKAFLDALPGGLPIGFLYAQHIDASFEQNLPQAVGRHSQWHVKNVRDGEALRCGEV 219
Cdd:COG2201   1 MP-------FKVVAIGASTGGPEALEEVLSALPADFPAPIVIVQHMPPGFTSSLAERLNRLTALPVKEAEDGERLEPGHV 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611 220 MVVPVLHELGFHHDG--RLKCSQRSWPEPYTPSIDQMMLNLAQQFGPDCGVIVFSGMGSDGSAAAAYVRRQGGEVWTQRA 297
Cdd:COG2201  74 YIAPGGRHLEVERSGgyRLRLSDGPPVNGHRPSVDVLFRSLAEVYGERAVGVILTGMGSDGAEGLKAIKEAGGLTIAQDE 153
                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 15595611 298 DSCVCSSMPDSLREAGYSSFNASPRELAEALVKHLAARCA 337
Cdd:COG2201 154 ESCVVYGMPRAAIEAGAVDEVLPLEEIAAALLRLLRRRAA 193
CheB_methylest pfam01339
CheB methylesterase;
152-328 1.76e-49

CheB methylesterase;


Pssm-ID: 460166  Cd Length: 178  Bit Score: 163.36  E-value: 1.76e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611   152 WLLAASLGGPAAVKAFLDALPGGLPIGFLYAQHIDASFEQNLPQAVGRHSQWHVKNVRDGEALRCGEVMVVPVLHELGFH 231
Cdd:pfam01339   1 VAIGASTGGPEALEELLPALPADLPAAIVVVQHMPPGFTSSLAERLNRLSALPVKEAEDGEPLEPGTVYIAPGGYHLLVE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611   232 HDGRLKCSQRSWPEPYTPSIDQMMLNLAQQFGPDCGV-IVFSGMGSDGSAAAAYVRRQGGEVWTQRADSCVCSSMPDSLR 310
Cdd:pfam01339  81 DGRGPYRSDGPPVNGHRPSIDVLFRSLAEAYGGKRAIgVILTGMGSDGAAGLKAIKEAGGLTIAQDPATAVVYGMPRAAI 160
                         170
                  ....*....|....*...
gi 15595611   311 EAGYSSFNASPRELAEAL 328
Cdd:pfam01339 161 EAGAADFVLPLEEIAAEL 178
CheB_Rec cd16432
Chemotaxis response regulator protein-glutamate methylesterase, CheB, with N-terminal REC ...
153-331 2.92e-32

Chemotaxis response regulator protein-glutamate methylesterase, CheB, with N-terminal REC domain; This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain with a REC domain at the N-terminus. CheB is a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. The N-terminal regulatory (REC) domain blocks the active site of the C-terminal domain until it is phosphorylated. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.


Pssm-ID: 319751  Cd Length: 184  Bit Score: 119.01  E-value: 2.92e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611 153 LLAASLGGPAAVKAFLDALPGGLPIGFLYAQHIDASFEQNLPQAVGRHSQWHVKNVRDGEALRCGEVMVVPVLHELGFHH 232
Cdd:cd16432   3 AIGASTGGPQALQEILSALPADFPAPILIVQHMPPGFTKSFAERLNRLSALPVKEAEDGEPLEPGTVYIAPGGYHLVVER 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611 233 DG---RLKCSQRSWPEPYTPSIDQMMLNLAQQFGPDCGVIVFSGMGSDGSAAAAYVRRQGGEVWTQRADSCVCSSMPDSL 309
Cdd:cd16432  83 RGgggRIRLSDGPPVNGHRPSVDVLFRSAAEVYGARALGVILTGMGRDGAEGLLALKEAGGYTIAQDEASSVVYGMPKAA 162
                       170       180
                ....*....|....*....|..
gi 15595611 310 REAGYSSFNASPRELAEALVKH 331
Cdd:cd16432 163 IEAGAADEVLPLDEIAAAILRL 184
PRK00742 PRK00742
chemotaxis-specific protein-glutamate methyltransferase CheB;
127-336 4.35e-20

chemotaxis-specific protein-glutamate methyltransferase CheB;


Pssm-ID: 234828 [Multi-domain]  Cd Length: 354  Bit Score: 89.82  E-value: 4.35e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611  127 RPPRLEIPGDLAAMPLQAGEAAREVWLLAASLGGPAAVKAFLDALPGGLPIGFLYAQHIDASFEQNLPQAVGRHSQWHVK 206
Cdd:PRK00742 142 AAAAARAAAAAPAALAAAPLLSSKLVAIGTSTGGPEALQKVLTPLPANFPAPILIVQHMPAGFTKSFAERLNRLCQIEVK 221
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611  207 NVRDGEALRCGEVMVVPVlhelGFH-------HDGRLKCSQRSWPEPYTPSIDQMMLNLAQQFGPDCGVIVFSGMGSDGS 279
Cdd:PRK00742 222 EAEDGERLKPGHAYIAPG----GKHmmvarsgANYRIKLDDGPPVNRHRPSVDVLFRSAAKAAGRNALGVILTGMGRDGA 297
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 15595611  280 AAAAYVRRQGGEVWTQRADSCVCSSMPDSLREAGYSSFNASPRELAEALVKHLAARC 336
Cdd:PRK00742 298 AGLLEMKQAGATTIAQDEASCVVYGMPKAAIEAGAVDEVLPLDQIAERILKEVAAGR 354
AmiR COG3707
Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding ...
8-88 5.38e-04

Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 442921 [Multi-domain]  Cd Length: 194  Bit Score: 40.33  E-value: 5.38e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611   8 RVAVIADTSLQRHVLQQALLGHGYEVVLNA-DPARVDDAALECAPDLWLVDLTQQDDSPL--LDSLLEQDRAPV-LFGEG 83
Cdd:COG3707   5 RVLVVDDEPLRRADLREGLREAGYEVVAEAaDGEDAVELVRELKPDLVIVDIDMPDRDGLeaARQISEERPAPViLLTAY 84

                ....*
gi 15595611  84 HAPER 88
Cdd:COG3707  85 SDPEL 89
 
Name Accession Description Interval E-value
CheB COG2201
Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains ...
140-337 1.12e-55

Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains [Signal transduction mechanisms];


Pssm-ID: 441803  Cd Length: 193  Bit Score: 179.90  E-value: 1.12e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611 140 MPlqageaaREVWLLAASLGGPAAVKAFLDALPGGLPIGFLYAQHIDASFEQNLPQAVGRHSQWHVKNVRDGEALRCGEV 219
Cdd:COG2201   1 MP-------FKVVAIGASTGGPEALEEVLSALPADFPAPIVIVQHMPPGFTSSLAERLNRLTALPVKEAEDGERLEPGHV 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611 220 MVVPVLHELGFHHDG--RLKCSQRSWPEPYTPSIDQMMLNLAQQFGPDCGVIVFSGMGSDGSAAAAYVRRQGGEVWTQRA 297
Cdd:COG2201  74 YIAPGGRHLEVERSGgyRLRLSDGPPVNGHRPSVDVLFRSLAEVYGERAVGVILTGMGSDGAEGLKAIKEAGGLTIAQDE 153
                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 15595611 298 DSCVCSSMPDSLREAGYSSFNASPRELAEALVKHLAARCA 337
Cdd:COG2201 154 ESCVVYGMPRAAIEAGAVDEVLPLEEIAAALLRLLRRRAA 193
CheB_methylest pfam01339
CheB methylesterase;
152-328 1.76e-49

CheB methylesterase;


Pssm-ID: 460166  Cd Length: 178  Bit Score: 163.36  E-value: 1.76e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611   152 WLLAASLGGPAAVKAFLDALPGGLPIGFLYAQHIDASFEQNLPQAVGRHSQWHVKNVRDGEALRCGEVMVVPVLHELGFH 231
Cdd:pfam01339   1 VAIGASTGGPEALEELLPALPADLPAAIVVVQHMPPGFTSSLAERLNRLSALPVKEAEDGEPLEPGTVYIAPGGYHLLVE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611   232 HDGRLKCSQRSWPEPYTPSIDQMMLNLAQQFGPDCGV-IVFSGMGSDGSAAAAYVRRQGGEVWTQRADSCVCSSMPDSLR 310
Cdd:pfam01339  81 DGRGPYRSDGPPVNGHRPSIDVLFRSLAEAYGGKRAIgVILTGMGSDGAAGLKAIKEAGGLTIAQDPATAVVYGMPRAAI 160
                         170
                  ....*....|....*...
gi 15595611   311 EAGYSSFNASPRELAEAL 328
Cdd:pfam01339 161 EAGAADFVLPLEEIAAEL 178
CheB_Rec cd16432
Chemotaxis response regulator protein-glutamate methylesterase, CheB, with N-terminal REC ...
153-331 2.92e-32

Chemotaxis response regulator protein-glutamate methylesterase, CheB, with N-terminal REC domain; This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain with a REC domain at the N-terminus. CheB is a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. The N-terminal regulatory (REC) domain blocks the active site of the C-terminal domain until it is phosphorylated. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.


Pssm-ID: 319751  Cd Length: 184  Bit Score: 119.01  E-value: 2.92e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611 153 LLAASLGGPAAVKAFLDALPGGLPIGFLYAQHIDASFEQNLPQAVGRHSQWHVKNVRDGEALRCGEVMVVPVLHELGFHH 232
Cdd:cd16432   3 AIGASTGGPQALQEILSALPADFPAPILIVQHMPPGFTKSFAERLNRLSALPVKEAEDGEPLEPGTVYIAPGGYHLVVER 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611 233 DG---RLKCSQRSWPEPYTPSIDQMMLNLAQQFGPDCGVIVFSGMGSDGSAAAAYVRRQGGEVWTQRADSCVCSSMPDSL 309
Cdd:cd16432  83 RGgggRIRLSDGPPVNGHRPSVDVLFRSAAEVYGARALGVILTGMGRDGAEGLLALKEAGGYTIAQDEASSVVYGMPKAA 162
                       170       180
                ....*....|....*....|..
gi 15595611 310 REAGYSSFNASPRELAEALVKH 331
Cdd:cd16432 163 IEAGAADEVLPLDEIAAAILRL 184
CheB-CheR_fusion cd16434
Chemotaxis response regulator protein-glutamate methylesterase, CheB, fused with CheR domain; ...
156-331 8.04e-29

Chemotaxis response regulator protein-glutamate methylesterase, CheB, fused with CheR domain; This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors, fused with a CheR domain as well as other domains. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheB and cheR are typically found in the same operon. However, CheB and CheR are fused in multi-domain proteins in this subgroup. The CheR protein/domain includes an all-alpha N-terminal domain and an S-adenosylmethionine-dependent methyltransferase C-terminal domain. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.


Pssm-ID: 319753  Cd Length: 180  Bit Score: 109.76  E-value: 8.04e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611 156 ASLGGPAAVKAFLDALPGGLPIGFLYAQHIDASFEQNLPQAVGRHSQWHVKNVRDGEALRCGEVMVVPVLHELGFHhDGR 235
Cdd:cd16434   6 ASAGGLEALEEFFSALPADSGMAFVVVQHLSPDHKSLLAELLARHTSMPVVEAEDGMRVEPNHVYVIPPGKDLTIE-DGR 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611 236 LKCSQRSWPEPYTPSIDQMMLNLAQQFGPDCGVIVFSGMGSDGSAAAAYVRRQGGEVWTQRADSCVCSSMPDSLREAGYS 315
Cdd:cd16434  85 LRLSPPDEPRGPRLPIDVFFRSLAEDQGERAIGVILSGTGSDGTLGLKAIKEAGGLVLAQDPETAKFDGMPRSAIATGLV 164
                       170
                ....*....|....*.
gi 15595611 316 SFNASPRELAEALVKH 331
Cdd:cd16434 165 DFVLPPEEIAAELLAY 180
CheB cd16433
Chemotaxis response regulator protein-glutamate methylesterase, CheB; This family contains the ...
154-330 9.12e-25

Chemotaxis response regulator protein-glutamate methylesterase, CheB; This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheR and cheB have a strong preference to occur in the same operon, and a subgroup contains multidomain proteins with CheB-CheR fusions. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.


Pssm-ID: 319752  Cd Length: 181  Bit Score: 98.99  E-value: 9.12e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611 154 LAASLGGPAAVKAFLDALPGGLPIGFLYAQHIDASFEQNLPQAVGRHSQWHVKNVRDGEALRCGEVMVVPVLHELGFHHD 233
Cdd:cd16433   4 IGASAGGLEALLELLSALPADFPAPVLVVLHRPPDSPSVLPELLSRRTPLPVKEAEDGEPIEPGTIYVAPPDYHLLVEDD 83
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611 234 GRLKCSqRSWPEPYT-PSIDQMMLNLAQQFGPDCGVIVFSGMGSDGSAAAAYVRRQGGEVWTQRADSCVCSSMPDSLREA 312
Cdd:cd16433  84 GTFSLS-RGPKVNFSrPSIDVLFRSAADAYGPRVIGVVLTGANDDGAAGLAAIKRAGGLTIVQDPATAEVPSMPRAALAA 162
                       170
                ....*....|....*...
gi 15595611 313 GYSSFNASPRELAEALVK 330
Cdd:cd16433 163 VAVDHVLPLAEIAALLVR 180
PRK00742 PRK00742
chemotaxis-specific protein-glutamate methyltransferase CheB;
127-336 4.35e-20

chemotaxis-specific protein-glutamate methyltransferase CheB;


Pssm-ID: 234828 [Multi-domain]  Cd Length: 354  Bit Score: 89.82  E-value: 4.35e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611  127 RPPRLEIPGDLAAMPLQAGEAAREVWLLAASLGGPAAVKAFLDALPGGLPIGFLYAQHIDASFEQNLPQAVGRHSQWHVK 206
Cdd:PRK00742 142 AAAAARAAAAAPAALAAAPLLSSKLVAIGTSTGGPEALQKVLTPLPANFPAPILIVQHMPAGFTKSFAERLNRLCQIEVK 221
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611  207 NVRDGEALRCGEVMVVPVlhelGFH-------HDGRLKCSQRSWPEPYTPSIDQMMLNLAQQFGPDCGVIVFSGMGSDGS 279
Cdd:PRK00742 222 EAEDGERLKPGHAYIAPG----GKHmmvarsgANYRIKLDDGPPVNRHRPSVDVLFRSAAKAAGRNALGVILTGMGRDGA 297
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 15595611  280 AAAAYVRRQGGEVWTQRADSCVCSSMPDSLREAGYSSFNASPRELAEALVKHLAARC 336
Cdd:PRK00742 298 AGLLEMKQAGATTIAQDEASCVVYGMPKAAIEAGAVDEVLPLDQIAERILKEVAAGR 354
CheB_like cd16351
methylesterase CheB domain family; This family contains the methylesterase CheB (EC 3.1.1.61; ...
154-330 7.26e-20

methylesterase CheB domain family; This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. CheB family members may also contain an N-terminal regulatory (REC) domain, which blocks the active site of the C-terminal domain until it is phosphorylated, or a CheR domain; typically cheB and cheR occur in the same operon. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.


Pssm-ID: 319750  Cd Length: 184  Bit Score: 85.70  E-value: 7.26e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611 154 LAASLGGPAAVKAFLDALPGGLPIGFLYAQHIDASFEQNLPQAVGRHSQWHVKNVRDGEALRCGEVMVVPVLHELGFHHD 233
Cdd:cd16351   4 IGASTGGLEALEHLFEQLPIHSGLVYVVIQHMPPGFTSSMAERLGKKTKVGVKEAEDGEPVEPGTIYIAPGDTHINLENG 83
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611 234 GRLKCSQRSWPEP---YTPSIDQMMLNLAQQFGPDCGVIVFSGMGSDGSAAAAYVRRQGGEVWTQRADSCVCSSMPDSLR 310
Cdd:cd16351  84 KGFKVQELSNDTGinnLRPPVDHFFSSLAKYNKEKSIAVILTGMGNDGSSGLSYVYDTGGTVIAQTEESCVVFGMPNYAI 163
                       170       180
                ....*....|....*....|
gi 15595611 311 EAGYSSFNASPRELAEALVK 330
Cdd:cd16351 164 QTGKVDHVVRPEEMASLFEQ 183
PRK12555 PRK12555
chemotaxis-specific protein-glutamate methyltransferase CheB;
8-306 1.08e-19

chemotaxis-specific protein-glutamate methyltransferase CheB;


Pssm-ID: 237135 [Multi-domain]  Cd Length: 337  Bit Score: 88.40  E-value: 1.08e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611    8 RVAVIADTSLQRHVLQQALLGH-GYEVVLNA-DPARVDDAALECAPDLWLVDL----------TQQ--DDSP----LLDS 69
Cdd:PRK12555   2 RIGIVNDSPLAVEALRRALARDpDHEVVWVAtDGAQAVERCAAQPPDVILMDLemprmdgveaTRRimAERPcpilIVTS 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611   70 LLEQDRAPVL---------------FGEGHAPERHTEhyprwerRLIGKLkrligdpsdgvgDSLGALLDEERPPRLEip 134
Cdd:PRK12555  82 LTERNASRVFeamgagaldavdtptLGIGAGLEEYAA-------ELLAKI------------DQIGRLLGRRLAPAAA-- 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611  135 gdLAAMPLQAGEAAREVWLLAASLGGPAAVKAFLDALPGGLPIGFLYAQHIDASFEQNLPQAVGRHSQWHVKNVRDGEAL 214
Cdd:PRK12555 141 --PAAASAAPFRTTPRLVAIGASAGGPAALAVLLGGLPADFPAAIVIVQHVDAAFAAGMAEWLDGQTALPVREAREGERP 218
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611  215 RCGEVMVVPVLHELGFHHDGRLKCSQRSWPEPYTPSIDQMMLNLAQQFGPD-CGVIVfSGMGSDGSAAAAYVRRQGGEVW 293
Cdd:PRK12555 219 QPGHVLLAPTNDHLRLTRDGALRYTREPPVNPYRPSVDVFFESVAQHWGGNaIGVLL-TGMGRDGARGLKAMRQAGAHTI 297
                        330
                 ....*....|...
gi 15595611  294 TQRADSCVCSSMP 306
Cdd:PRK12555 298 AQDEASSAVYGMP 310
AmiR COG3707
Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding ...
8-88 5.38e-04

Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 442921 [Multi-domain]  Cd Length: 194  Bit Score: 40.33  E-value: 5.38e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611   8 RVAVIADTSLQRHVLQQALLGHGYEVVLNA-DPARVDDAALECAPDLWLVDLTQQDDSPL--LDSLLEQDRAPV-LFGEG 83
Cdd:COG3707   5 RVLVVDDEPLRRADLREGLREAGYEVVAEAaDGEDAVELVRELKPDLVIVDIDMPDRDGLeaARQISEERPAPViLLTAY 84

                ....*
gi 15595611  84 HAPER 88
Cdd:COG3707  85 SDPEL 89
PleD COG3706
Two-component response regulator, PleD family, consists of two REC domains and a diguanylate ...
6-58 1.94e-03

Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain [Signal transduction mechanisms, Transcription];


Pssm-ID: 442920 [Multi-domain]  Cd Length: 179  Bit Score: 38.74  E-value: 1.94e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 15595611   6 TPRVAVIADTSLQRHVLQQALLGHGYEVVLNADPARVDDAALECAPDLWLVDL 58
Cdd:COG3706   1 PARILVVDDDPTNRKLLRRLLEAAGYEVVEAADGEEALELLQEHRPDLILLDL 53
OmpR COG0745
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain ...
6-58 6.87e-03

DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain [Signal transduction mechanisms, Transcription];


Pssm-ID: 440508 [Multi-domain]  Cd Length: 204  Bit Score: 37.24  E-value: 6.87e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 15595611   6 TPRVAVIADTSLQRHVLQQALLGHGYEVVLNADPARVDDAALECAPDLWLVDL 58
Cdd:COG0745   1 MPRILVVEDDPDIRELLADALEREGYEVDTAADGEEALELLEEERPDLILLDL 53
COG4567 COG4567
DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains ...
6-85 7.38e-03

DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 443624 [Multi-domain]  Cd Length: 177  Bit Score: 36.82  E-value: 7.38e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595611   6 TPRVAVIADTSLQRHVLQQALLGHGYEVVLNADPARVDDAALECAPDLWLVDLTQQDDS--PLLDSLLEQD-RAPVLFGE 82
Cdd:COG4567   4 DRSLLLVDDDEAFARVLARALERRGFEVTTAASVEEALALLEQAPPDYAVLDLRLGDGSglDLIEALRERDpDARIVVLT 83

                ...
gi 15595611  83 GHA 85
Cdd:COG4567  84 GYA 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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