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Conserved domains on  [gi|15595739|ref|NP_249233|]
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hypothetical protein PA0542 [Pseudomonas aeruginosa PAO1]

Protein Classification

DUF1090 domain-containing protein( domain architecture ID 10534440)

DUF1090 domain-containing protein similar to Escherichia coli YqjC

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1090 pfam06476
Protein of unknown function (DUF1090); This family consists of several bacterial proteins of ...
 24-118 6.78e-25

Protein of unknown function (DUF1090); This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.


:

Pssm-ID: 428965 [Multi-domain]  Cd Length: 109  Bit Score: 91.53  E-value: 6.78e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595739    24 QPGAAKGAPLSGCAAKQAAIEAKLETARSFANEGQVAGLEKALSEVKEHCTEAGLLRENKQKVIDSEREVSEREKDLRKA 103
Cdd:pfam06476   5 LLAAAAAAALSGCAAKRQAIEKQLSYAKAHGNQHRVAGLEKALAEVRAHCTDAGLRAERQQKVAEKREEVAEREAELAEA 84

                          90
                  ....*....|....*
gi 15595739   104 MGKGDPEKIEKRKAK 118
Cdd:pfam06476  85 QAKGDADKIAKRQRK 99
 
Name Accession Description Interval E-value
DUF1090 pfam06476
Protein of unknown function (DUF1090); This family consists of several bacterial proteins of ...
 24-118 6.78e-25

Protein of unknown function (DUF1090); This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.


Pssm-ID: 428965 [Multi-domain]  Cd Length: 109  Bit Score: 91.53  E-value: 6.78e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595739    24 QPGAAKGAPLSGCAAKQAAIEAKLETARSFANEGQVAGLEKALSEVKEHCTEAGLLRENKQKVIDSEREVSEREKDLRKA 103
Cdd:pfam06476   5 LLAAAAAAALSGCAAKRQAIEKQLSYAKAHGNQHRVAGLEKALAEVRAHCTDAGLRAERQQKVAEKREEVAEREAELAEA 84

                          90
                  ....*....|....*
gi 15595739   104 MGKGDPEKIEKRKAK 118
Cdd:pfam06476  85 QAKGDADKIAKRQRK 99
 
Name Accession Description Interval E-value
DUF1090 pfam06476
Protein of unknown function (DUF1090); This family consists of several bacterial proteins of ...
 24-118 6.78e-25

Protein of unknown function (DUF1090); This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.


Pssm-ID: 428965 [Multi-domain]  Cd Length: 109  Bit Score: 91.53  E-value: 6.78e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595739    24 QPGAAKGAPLSGCAAKQAAIEAKLETARSFANEGQVAGLEKALSEVKEHCTEAGLLRENKQKVIDSEREVSEREKDLRKA 103
Cdd:pfam06476   5 LLAAAAAAALSGCAAKRQAIEKQLSYAKAHGNQHRVAGLEKALAEVRAHCTDAGLRAERQQKVAEKREEVAEREAELAEA 84

                          90
                  ....*....|....*
gi 15595739   104 MGKGDPEKIEKRKAK 118
Cdd:pfam06476  85 QAKGDADKIAKRQRK 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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