NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15595861|ref|NP_249355|]
View 

hypothetical protein PA0664 [Pseudomonas aeruginosa PAO1]

Protein Classification

polymer-forming cytoskeletal protein( domain architecture ID 10004140)

polymer-forming cytoskeletal protein similar to Caulobacter crescentus cytoskeletal bactofilin BacA that mediates polar localization of a cell wall synthase

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CcmA COG1664
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
4-127 2.62e-34

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


:

Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 116.15  E-value: 2.62e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595861   4 MWSKNKGRADvqrfTGQTSLIASGAELVGDMNLKGAVQIDGTVRGALQAhEGLVRVSAGGRVDGEIRAPHVIIDGQVDGD 83
Cdd:COG1664   1 MFKKKSAAES----EGITTVIGEGTTIKGDITSEGDLRIDGTVEGDITA-EGTLVIGEGGVVEGDIEADNVVINGTVEGN 75

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....
gi 15595861  84 IHAIERLELGAQARVKGNLHYGLIETAMGAQIEGRLCPMTEASP 127
Cdd:COG1664  76 ITASEKLELLSTARVEGDITAGSLEIEEGAVFEGKCEMGEDEAA 119
 
Name Accession Description Interval E-value
CcmA COG1664
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
4-127 2.62e-34

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 116.15  E-value: 2.62e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595861   4 MWSKNKGRADvqrfTGQTSLIASGAELVGDMNLKGAVQIDGTVRGALQAhEGLVRVSAGGRVDGEIRAPHVIIDGQVDGD 83
Cdd:COG1664   1 MFKKKSAAES----EGITTVIGEGTTIKGDITSEGDLRIDGTVEGDITA-EGTLVIGEGGVVEGDIEADNVVINGTVEGN 75

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....
gi 15595861  84 IHAIERLELGAQARVKGNLHYGLIETAMGAQIEGRLCPMTEASP 127
Cdd:COG1664  76 ITASEKLELLSTARVEGDITAGSLEIEEGAVFEGKCEMGEDEAA 119
Bactofilin pfam04519
Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of ...
 30-119 1.89e-27

Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.


Pssm-ID: 461340 [Multi-domain]  Cd Length: 89  Bit Score: 97.10  E-value: 1.89e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595861    30 LVGDMNLKGAVQIDGTVRGALQAhEGLVRVSAGGRVDGEIRAPHVIIDGQVDGDIHAIERLELGAQARVKGNLHYGLIET 109
Cdd:pfam04519   1 IEGDISFEGDLRIDGKVEGNITS-KGTLVIGEGGRVEGDIKAESVVIAGTVEGNITASEKLELLSTARVEGDIKTGSLEI 79

                          90
                  ....*....|
gi 15595861   110 AMGAQIEGRL 119
Cdd:pfam04519  80 EEGAVFEGRC 89
 
Name Accession Description Interval E-value
CcmA COG1664
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
4-127 2.62e-34

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 116.15  E-value: 2.62e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595861   4 MWSKNKGRADvqrfTGQTSLIASGAELVGDMNLKGAVQIDGTVRGALQAhEGLVRVSAGGRVDGEIRAPHVIIDGQVDGD 83
Cdd:COG1664   1 MFKKKSAAES----EGITTVIGEGTTIKGDITSEGDLRIDGTVEGDITA-EGTLVIGEGGVVEGDIEADNVVINGTVEGN 75

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....
gi 15595861  84 IHAIERLELGAQARVKGNLHYGLIETAMGAQIEGRLCPMTEASP 127
Cdd:COG1664  76 ITASEKLELLSTARVEGDITAGSLEIEEGAVFEGKCEMGEDEAA 119
Bactofilin pfam04519
Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of ...
 30-119 1.89e-27

Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.


Pssm-ID: 461340 [Multi-domain]  Cd Length: 89  Bit Score: 97.10  E-value: 1.89e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595861    30 LVGDMNLKGAVQIDGTVRGALQAhEGLVRVSAGGRVDGEIRAPHVIIDGQVDGDIHAIERLELGAQARVKGNLHYGLIET 109
Cdd:pfam04519   1 IEGDISFEGDLRIDGKVEGNITS-KGTLVIGEGGRVEGDIKAESVVIAGTVEGNITASEKLELLSTARVEGDIKTGSLEI 79

                          90
                  ....*....|
gi 15595861   110 AMGAQIEGRL 119
Cdd:pfam04519  80 EEGAVFEGRC 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH