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Conserved domains on  [gi|15596117|ref|NP_249611|]
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hypothetical protein PA0920 [Pseudomonas aeruginosa PAO1]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
bifunc_MprF NF033480
bifunctional lysylphosphatidylglycerol flippase/synthetase MprF; The C-terminal region of MprF ...
33-873 0e+00

bifunctional lysylphosphatidylglycerol flippase/synthetase MprF; The C-terminal region of MprF tranfers lysine from a charged tRNA onto phosphatidylglycerol to make lysylphosphatidylglycerol (EC 2.3.2.3). The N-terminal region of MprF acts as a flippase. MprF helps confer resistance to antimicrobial cationic peptides.


:

Pssm-ID: 468043 [Multi-domain]  Cd Length: 839  Bit Score: 742.79  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   33 RQPIGLVFTLLLFGLALVACYHLLREIDPGALHDAIADVPRPALLGALSATALGFVILLGYEWSASRFAGVTLPMRSLAT 112
Cdd:NF033480   1 RRLLKILFVLAVLILVLFELHRLLKEISLADVLAALSALSPWQLLLALLLGLLSVLPLLGYDFIALRYLGLKLPLRYIAL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  113 GGFSAFAIGNAVGLSLLSGGSVRYRLYSRHGIGAAEIARMTLFASLSLGCALPVLAALAALCDLDDAASALHLPRALVAV 192
Cdd:NF033480  81 TSWIANTFNNLLGFGGLTGGALRYRFYGKAGLDKKDIARVISFVALFFLLGLSILSGLALLLIFFALSLLLGLPWYWIWL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  193 IAIAVLSLAVGLVAFLARHRLPGERPspdsllVRLGRRSLRLPGLRLSLLQLLITALDVAAAATVLYLLLPETPPFAAFL 272
Cdd:NF033480 161 LGGGLYLPLLLLITLLLKRRGLFDLT------LRIGGWKLRLPLIGVSLLQWLAAALDFLAAGAVLGVLLPAFPAFLPIF 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  273 LVYLLAlaaGVLSHVPGGVGVFEAVLLAAFAGQLGAAPLAAAL-LLYRLIYVVLPLLLACLLLLFLEARRL------WVT 345
Cdd:NF033480 235 IIASVA---GVISMVPGGLGVFDLVMLLGLSQLGVPDEQVLAAlLLYRLFYYLLPFLIGLILFAKEEGRRAnreplaRLD 311
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  346 RQAIRVASGFAAPILAILVFLSGVVLLFSGATPAIDTRLEHLGFLIPhRLIDASHLVASLIGVLCLLLAQGLRRRLSAAW 425
Cdd:NF033480 312 GLPRRLLQKLAPLLLAILVFFSGIMLLLSGATPALSERLKLLRPFLP-PFIEASHLLSSLLGFLLLLLARGLARRLKRAY 390
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  426 ALTLVLLLVGALLSLLKGFDWEEASLLSLTAALLAMFRRSFYRPSRLMEVPFSPLYVGASICVVGASVWLLLFANQDVHY 505
Cdd:NF033480 391 WLTLVLLLLGIVFSLLKGLDYEEAIVLLLLLLLLLLSRKEFYRESSLYSWELSLGWLLAIALVLILYIWLGFFAYRHVPY 470
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  506 SNQLWWQFALDA---DAPRALRAALGSCLLLLALALGWLLRAAPPAIREPnAEELQRAARIIRHSDQPDGGLALTGDKAL 582
Cdd:NF033480 471 SNDLWWQFALFPsekDAPRGLRALLIVALVLLLFALYLLLRPPPKPLGPD-FDELRRAAILVAYGGNTDSHLAFLGDKRL 549
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  583 LFHESDDAFLMYARRGRSMIALYDPIGPAMQRAELIWQFRDLCDLHHARPVFYQVRAENLPFYMDIGLTALKLGEEARVD 662
Cdd:NF033480 550 YFSQDDTAFLMYRIKGNSWIVLGDPVGNPEAFAELIWEFRELADRLGYRPVFYQVSEEYLPLYHDLGLDFFKLGEEAVVD 629
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  663 LLRFDLEnkGKEMKDLRYTWNRGQRDGLALEFHEPGQAP--LDELKAISDAWLGGKqvREKGFSLGRFTPAYLNFFRIAI 740
Cdd:NF033480 630 LEDFTLE--GKKRKGLRAALNKFEREGYTFEVLEPPFSPelLPELKAISDEWLAGK--KEKGFSLGFFDEDYLQRAPIAV 705
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  741 VRH-QGKPVAFANLLETDSRELASLDLMRVHPDAPKLTMEFLMLGLILHYKAQGHARFSLGMVPLAGLQPRRGAPLTQRL 819
Cdd:NF033480 706 VRDeEGKIVAFANLMPTYDKEEASIDLMRHLPDAPNGTMDFLFINLFLWAKEQGYRYFNLGMAPLSGVGQSRLSFLWERI 785
                        810       820       830       840       850
                 ....*....|....*....|....*....|....*....|....*....|....
gi 15596117  820 GALVFRRGEQFYNFQGLRRFKDKFQPDWEPRYLAVPAGLDPLVALADTAALIAG 873
Cdd:NF033480 786 AALVYEHGERFYNFQGLRAYKEKFAPEWEPRYLAYPKGSSLLFALLDLTRLISG 839
 
Name Accession Description Interval E-value
bifunc_MprF NF033480
bifunctional lysylphosphatidylglycerol flippase/synthetase MprF; The C-terminal region of MprF ...
33-873 0e+00

bifunctional lysylphosphatidylglycerol flippase/synthetase MprF; The C-terminal region of MprF tranfers lysine from a charged tRNA onto phosphatidylglycerol to make lysylphosphatidylglycerol (EC 2.3.2.3). The N-terminal region of MprF acts as a flippase. MprF helps confer resistance to antimicrobial cationic peptides.


Pssm-ID: 468043 [Multi-domain]  Cd Length: 839  Bit Score: 742.79  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   33 RQPIGLVFTLLLFGLALVACYHLLREIDPGALHDAIADVPRPALLGALSATALGFVILLGYEWSASRFAGVTLPMRSLAT 112
Cdd:NF033480   1 RRLLKILFVLAVLILVLFELHRLLKEISLADVLAALSALSPWQLLLALLLGLLSVLPLLGYDFIALRYLGLKLPLRYIAL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  113 GGFSAFAIGNAVGLSLLSGGSVRYRLYSRHGIGAAEIARMTLFASLSLGCALPVLAALAALCDLDDAASALHLPRALVAV 192
Cdd:NF033480  81 TSWIANTFNNLLGFGGLTGGALRYRFYGKAGLDKKDIARVISFVALFFLLGLSILSGLALLLIFFALSLLLGLPWYWIWL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  193 IAIAVLSLAVGLVAFLARHRLPGERPspdsllVRLGRRSLRLPGLRLSLLQLLITALDVAAAATVLYLLLPETPPFAAFL 272
Cdd:NF033480 161 LGGGLYLPLLLLITLLLKRRGLFDLT------LRIGGWKLRLPLIGVSLLQWLAAALDFLAAGAVLGVLLPAFPAFLPIF 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  273 LVYLLAlaaGVLSHVPGGVGVFEAVLLAAFAGQLGAAPLAAAL-LLYRLIYVVLPLLLACLLLLFLEARRL------WVT 345
Cdd:NF033480 235 IIASVA---GVISMVPGGLGVFDLVMLLGLSQLGVPDEQVLAAlLLYRLFYYLLPFLIGLILFAKEEGRRAnreplaRLD 311
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  346 RQAIRVASGFAAPILAILVFLSGVVLLFSGATPAIDTRLEHLGFLIPhRLIDASHLVASLIGVLCLLLAQGLRRRLSAAW 425
Cdd:NF033480 312 GLPRRLLQKLAPLLLAILVFFSGIMLLLSGATPALSERLKLLRPFLP-PFIEASHLLSSLLGFLLLLLARGLARRLKRAY 390
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  426 ALTLVLLLVGALLSLLKGFDWEEASLLSLTAALLAMFRRSFYRPSRLMEVPFSPLYVGASICVVGASVWLLLFANQDVHY 505
Cdd:NF033480 391 WLTLVLLLLGIVFSLLKGLDYEEAIVLLLLLLLLLLSRKEFYRESSLYSWELSLGWLLAIALVLILYIWLGFFAYRHVPY 470
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  506 SNQLWWQFALDA---DAPRALRAALGSCLLLLALALGWLLRAAPPAIREPnAEELQRAARIIRHSDQPDGGLALTGDKAL 582
Cdd:NF033480 471 SNDLWWQFALFPsekDAPRGLRALLIVALVLLLFALYLLLRPPPKPLGPD-FDELRRAAILVAYGGNTDSHLAFLGDKRL 549
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  583 LFHESDDAFLMYARRGRSMIALYDPIGPAMQRAELIWQFRDLCDLHHARPVFYQVRAENLPFYMDIGLTALKLGEEARVD 662
Cdd:NF033480 550 YFSQDDTAFLMYRIKGNSWIVLGDPVGNPEAFAELIWEFRELADRLGYRPVFYQVSEEYLPLYHDLGLDFFKLGEEAVVD 629
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  663 LLRFDLEnkGKEMKDLRYTWNRGQRDGLALEFHEPGQAP--LDELKAISDAWLGGKqvREKGFSLGRFTPAYLNFFRIAI 740
Cdd:NF033480 630 LEDFTLE--GKKRKGLRAALNKFEREGYTFEVLEPPFSPelLPELKAISDEWLAGK--KEKGFSLGFFDEDYLQRAPIAV 705
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  741 VRH-QGKPVAFANLLETDSRELASLDLMRVHPDAPKLTMEFLMLGLILHYKAQGHARFSLGMVPLAGLQPRRGAPLTQRL 819
Cdd:NF033480 706 VRDeEGKIVAFANLMPTYDKEEASIDLMRHLPDAPNGTMDFLFINLFLWAKEQGYRYFNLGMAPLSGVGQSRLSFLWERI 785
                        810       820       830       840       850
                 ....*....|....*....|....*....|....*....|....*....|....
gi 15596117  820 GALVFRRGEQFYNFQGLRRFKDKFQPDWEPRYLAVPAGLDPLVALADTAALIAG 873
Cdd:NF033480 786 AALVYEHGERFYNFQGLRAYKEKFAPEWEPRYLAYPKGSSLLFALLDLTRLISG 839
MprF2 COG2898
Lysylphosphatidylglycerol synthetase MprF, lysyl-tRNA-binding C-terminal domain [Lipid ...
339-876 3.33e-119

Lysylphosphatidylglycerol synthetase MprF, lysyl-tRNA-binding C-terminal domain [Lipid transport and metabolism];


Pssm-ID: 442143 [Multi-domain]  Cd Length: 588  Bit Score: 374.44  E-value: 3.33e-119
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117 339 ARRLWVTRQAIRVASGFAAPILAILVFLSGVVLLFSGATPAIDTRLEHLGFLIPHRLIDASHLVASLIGVLCLLLAQGLR 418
Cdd:COG2898  37 AGRGRVYGAALLALFYGGAAVLALGVALLSLLLLLLLALLSLLSLALLALLLLVLLLLLLLGLLLLLLLALLLALVLLRA 116
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117 419 RRLSAAWALTLVLLLVGALLSLLKGFDWeeaslLSLTAALLAMFRRSFYRPSRLMEVPFSPLYVGASIC--------VVG 490
Cdd:COG2898 117 RRIRIGLLALALPLLLALLLLLLSALAL-----LAAAAALLLILLLLGALLSFAAFAALFVAAVLAGIVsgvpgglgVFG 191
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117 491 ASVWLLLFANQDVHYSNQLWWQFALDADAPRALRAALGSCLLLLALALGWLLRAA-----PPAIREPNAEELQRAARII- 564
Cdd:COG2898 192 VVLLALLGALGLPALLALLLLLRYRLYLLPLLLLLLLLLFLLLLARAAALAVALLrllrpARPRPAPTAEDLERARALLr 271
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117 565 RHSDQPDGGLALTGDKALLFHESDDAFLMYARRGRSMIALYDPIGPAMQRAELIWQFRDLCDLHHARPVFYQVRAENLPF 644
Cdd:COG2898 272 RYGGDSLSYLALLGDKSYFFSPDGRAFIAYRVVGGVAVALGDPIGDPEDWAELIWEFLEFADRHGWRPAFYQVSEEDLPL 351
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117 645 YMDIGLTALKLGEEARVDLLRFDLEnkGKEMKDLRYTWNRGQRDGLALEFHEPGQAP---LDELKAISDAWLGGKQVREK 721
Cdd:COG2898 352 YRDAGLRALKLGEEAVVDLAEFTLE--GKKRKDLRQAVNRAERAGYTVEVVRPPELSpalLAELRAISDEWLAGKGLPEK 429
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117 722 GFSLGRFTPAYLNFFRIAIVR-HQGKPVAFANLLETDSRELASLDLMRVHPDAPKLTMEFLMLGLILHYKAQGHARFSLG 800
Cdd:COG2898 430 GFSLGRFDEDYLPRVRLAVARdADGRVVAFASFVPVYGREGWSLDLMRRRPDAPNGVMEFLFASLILWAKEEGYERFSLG 509
                       490       500       510       520       530       540       550
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15596117 801 MVPLAGLQPRRGAPLTQRLGALVFRRGEQFYNFQGLRRFKDKFQPDWEPRYLAVPAGLDPLVALADTAALIAGGLT 876
Cdd:COG2898 510 MAPLSGVGERGGAGPVERLLRLLYRHGERFYGFEGLRRFKEKFQPEWEPRYLAYPGGLSLPRILLALARAEGPGLR 585
LPG_synthase_C pfam09924
Phosphatidylglycerol lysyltransferase, C-terminal; This domain can be found in the C-terminal ...
565-853 5.57e-103

Phosphatidylglycerol lysyltransferase, C-terminal; This domain can be found in the C-terminal region of phosphatidylglycerol lysyltransferase mprF, which catalyzes the transfer of a lysyl group from L-lysyl-tRNA(Lys) to to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG). This domain can also be found in lysylphosphatidylglycerol biosynthesis bifunctional protein LysX, which is the two-domain lysyl-transferase (mprF)-lysyl-tRNA synthetase (lysU) protein is responsible for LPG production.


Pssm-ID: 430930 [Multi-domain]  Cd Length: 297  Bit Score: 321.14  E-value: 5.57e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   565 RHSDQPDGGLALTGDKALLF-HESDDAFLMYARRGRSMIALYDPIGPAMQRAELIWQFRDLCDLHHARPVFYQVRAENLP 643
Cdd:pfam09924   7 YGSEDSFANLALWRDKSYYFySPVGDALIAYRVEGGGALAFGDPIGDPEAWPEALEAFLELADDHGWRPAFYGVSEEGAE 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   644 FYMDIGLTALKLGEEARVDLLRFDLEnkGKEMKDLRYTWNRGQRDGLALEFHEPGQAP--LDELKAISDAWLGGKQVREK 721
Cdd:pfam09924  87 LYAELGLTEDRLGEEAVVDLEDFTLS--GKKFRKLRNAINRFERAGYTFEVEPITDVPelLDELLEISDEWLKQKEGTEK 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   722 GFSLGRFTPAYLNFFRIAIVRHQGKPVAFANLLETDSRELASLDLMRVHPDAPKLTMEFLMLGLILHYKAQGHARFSLGM 801
Cdd:pfam09924 165 GFSLGAFDEGYLLGLRGLLVRVEGKIVAFASGEPLNGRDTASLDLMRRDPDAPNGLMEFLNAELAEWLKEEGYEYVNLGF 244
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15596117   802 VPLAGLQPRRGAPLTQRLGALVFRRGEQFYNFQGLRRFKDKFQPDWEPRYLA 853
Cdd:pfam09924 245 APLSGLGERPGAPPLERLARLLYEHGERDYGFEGLRRAKLKYHPDWEPKYLA 296
lysS PRK02983
bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX;
553-865 5.67e-20

bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX;


Pssm-ID: 235095 [Multi-domain]  Cd Length: 1094  Bit Score: 95.80  E-value: 5.67e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   553 NAEELQRAARIIRHSDQPD--GGLALTGDKALLFHESDDAFLMYARRGRSMIALYDPIGPAMQRAELIWQFRDLCDLHHA 630
Cdd:PRK02983  234 TGEDELAIRGLLLLYGEDDslGYFATRRDKSVVFAPSGRAAITYRVEVGVCLASGDPVGDPEAWPQAIDAWLALARTYGW 313
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   631 RPVFYQVRAENLPFYMDIGLTALKLGEEARVDLLRFDLenKGKEMKDLRYTWNRGQRDGLALEFHEPGQAPLDELKAIS- 709
Cdd:PRK02983  314 APAVMGASEAGARAYREAGLSALELGDEAILDTADFTL--SGPDMRPVRQAVTRVRRAGYTVRIRRHRDLPAEEMAQVIa 391
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   710 --DAWLGGKQvrEKGFS--LGRF-TPAYLNFFRIAIVRHQGKPVAFANLLETDSRELaSLDLMRVHPDAPKLTMEFLMLG 784
Cdd:PRK02983  392 raDAWRDTET--ERGFSmaLGRLgDPADGDCLLVEAHDADGQVVALLSFVPWGRRGL-SLDLMRRSPDAPNGVIELMVAE 468
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   785 LILHYKAQGHARFSLGMVPLAGL---QPRRGAPLTQRL--GALVFrrGEQFYNFQGLRRFKDKFQPDWEPRYLAVPAGLD 859
Cdd:PRK02983  469 LALEAESLGITRISLNFAVFRSAfeeGARLGAGPVLRLwrGLLLF--FSRWWQLESLYRSNVKYQPDWVPRYLCYEDARL 546

                  ....*..
gi 15596117   860 -PLVALA 865
Cdd:PRK02983  547 lPRVGVA 553
 
Name Accession Description Interval E-value
bifunc_MprF NF033480
bifunctional lysylphosphatidylglycerol flippase/synthetase MprF; The C-terminal region of MprF ...
33-873 0e+00

bifunctional lysylphosphatidylglycerol flippase/synthetase MprF; The C-terminal region of MprF tranfers lysine from a charged tRNA onto phosphatidylglycerol to make lysylphosphatidylglycerol (EC 2.3.2.3). The N-terminal region of MprF acts as a flippase. MprF helps confer resistance to antimicrobial cationic peptides.


Pssm-ID: 468043 [Multi-domain]  Cd Length: 839  Bit Score: 742.79  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   33 RQPIGLVFTLLLFGLALVACYHLLREIDPGALHDAIADVPRPALLGALSATALGFVILLGYEWSASRFAGVTLPMRSLAT 112
Cdd:NF033480   1 RRLLKILFVLAVLILVLFELHRLLKEISLADVLAALSALSPWQLLLALLLGLLSVLPLLGYDFIALRYLGLKLPLRYIAL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  113 GGFSAFAIGNAVGLSLLSGGSVRYRLYSRHGIGAAEIARMTLFASLSLGCALPVLAALAALCDLDDAASALHLPRALVAV 192
Cdd:NF033480  81 TSWIANTFNNLLGFGGLTGGALRYRFYGKAGLDKKDIARVISFVALFFLLGLSILSGLALLLIFFALSLLLGLPWYWIWL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  193 IAIAVLSLAVGLVAFLARHRLPGERPspdsllVRLGRRSLRLPGLRLSLLQLLITALDVAAAATVLYLLLPETPPFAAFL 272
Cdd:NF033480 161 LGGGLYLPLLLLITLLLKRRGLFDLT------LRIGGWKLRLPLIGVSLLQWLAAALDFLAAGAVLGVLLPAFPAFLPIF 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  273 LVYLLAlaaGVLSHVPGGVGVFEAVLLAAFAGQLGAAPLAAAL-LLYRLIYVVLPLLLACLLLLFLEARRL------WVT 345
Cdd:NF033480 235 IIASVA---GVISMVPGGLGVFDLVMLLGLSQLGVPDEQVLAAlLLYRLFYYLLPFLIGLILFAKEEGRRAnreplaRLD 311
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  346 RQAIRVASGFAAPILAILVFLSGVVLLFSGATPAIDTRLEHLGFLIPhRLIDASHLVASLIGVLCLLLAQGLRRRLSAAW 425
Cdd:NF033480 312 GLPRRLLQKLAPLLLAILVFFSGIMLLLSGATPALSERLKLLRPFLP-PFIEASHLLSSLLGFLLLLLARGLARRLKRAY 390
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  426 ALTLVLLLVGALLSLLKGFDWEEASLLSLTAALLAMFRRSFYRPSRLMEVPFSPLYVGASICVVGASVWLLLFANQDVHY 505
Cdd:NF033480 391 WLTLVLLLLGIVFSLLKGLDYEEAIVLLLLLLLLLLSRKEFYRESSLYSWELSLGWLLAIALVLILYIWLGFFAYRHVPY 470
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  506 SNQLWWQFALDA---DAPRALRAALGSCLLLLALALGWLLRAAPPAIREPnAEELQRAARIIRHSDQPDGGLALTGDKAL 582
Cdd:NF033480 471 SNDLWWQFALFPsekDAPRGLRALLIVALVLLLFALYLLLRPPPKPLGPD-FDELRRAAILVAYGGNTDSHLAFLGDKRL 549
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  583 LFHESDDAFLMYARRGRSMIALYDPIGPAMQRAELIWQFRDLCDLHHARPVFYQVRAENLPFYMDIGLTALKLGEEARVD 662
Cdd:NF033480 550 YFSQDDTAFLMYRIKGNSWIVLGDPVGNPEAFAELIWEFRELADRLGYRPVFYQVSEEYLPLYHDLGLDFFKLGEEAVVD 629
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  663 LLRFDLEnkGKEMKDLRYTWNRGQRDGLALEFHEPGQAP--LDELKAISDAWLGGKqvREKGFSLGRFTPAYLNFFRIAI 740
Cdd:NF033480 630 LEDFTLE--GKKRKGLRAALNKFEREGYTFEVLEPPFSPelLPELKAISDEWLAGK--KEKGFSLGFFDEDYLQRAPIAV 705
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  741 VRH-QGKPVAFANLLETDSRELASLDLMRVHPDAPKLTMEFLMLGLILHYKAQGHARFSLGMVPLAGLQPRRGAPLTQRL 819
Cdd:NF033480 706 VRDeEGKIVAFANLMPTYDKEEASIDLMRHLPDAPNGTMDFLFINLFLWAKEQGYRYFNLGMAPLSGVGQSRLSFLWERI 785
                        810       820       830       840       850
                 ....*....|....*....|....*....|....*....|....*....|....
gi 15596117  820 GALVFRRGEQFYNFQGLRRFKDKFQPDWEPRYLAVPAGLDPLVALADTAALIAG 873
Cdd:NF033480 786 AALVYEHGERFYNFQGLRAYKEKFAPEWEPRYLAYPKGSSLLFALLDLTRLISG 839
MprF2 COG2898
Lysylphosphatidylglycerol synthetase MprF, lysyl-tRNA-binding C-terminal domain [Lipid ...
339-876 3.33e-119

Lysylphosphatidylglycerol synthetase MprF, lysyl-tRNA-binding C-terminal domain [Lipid transport and metabolism];


Pssm-ID: 442143 [Multi-domain]  Cd Length: 588  Bit Score: 374.44  E-value: 3.33e-119
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117 339 ARRLWVTRQAIRVASGFAAPILAILVFLSGVVLLFSGATPAIDTRLEHLGFLIPHRLIDASHLVASLIGVLCLLLAQGLR 418
Cdd:COG2898  37 AGRGRVYGAALLALFYGGAAVLALGVALLSLLLLLLLALLSLLSLALLALLLLVLLLLLLLGLLLLLLLALLLALVLLRA 116
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117 419 RRLSAAWALTLVLLLVGALLSLLKGFDWeeaslLSLTAALLAMFRRSFYRPSRLMEVPFSPLYVGASIC--------VVG 490
Cdd:COG2898 117 RRIRIGLLALALPLLLALLLLLLSALAL-----LAAAAALLLILLLLGALLSFAAFAALFVAAVLAGIVsgvpgglgVFG 191
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117 491 ASVWLLLFANQDVHYSNQLWWQFALDADAPRALRAALGSCLLLLALALGWLLRAA-----PPAIREPNAEELQRAARII- 564
Cdd:COG2898 192 VVLLALLGALGLPALLALLLLLRYRLYLLPLLLLLLLLLFLLLLARAAALAVALLrllrpARPRPAPTAEDLERARALLr 271
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117 565 RHSDQPDGGLALTGDKALLFHESDDAFLMYARRGRSMIALYDPIGPAMQRAELIWQFRDLCDLHHARPVFYQVRAENLPF 644
Cdd:COG2898 272 RYGGDSLSYLALLGDKSYFFSPDGRAFIAYRVVGGVAVALGDPIGDPEDWAELIWEFLEFADRHGWRPAFYQVSEEDLPL 351
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117 645 YMDIGLTALKLGEEARVDLLRFDLEnkGKEMKDLRYTWNRGQRDGLALEFHEPGQAP---LDELKAISDAWLGGKQVREK 721
Cdd:COG2898 352 YRDAGLRALKLGEEAVVDLAEFTLE--GKKRKDLRQAVNRAERAGYTVEVVRPPELSpalLAELRAISDEWLAGKGLPEK 429
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117 722 GFSLGRFTPAYLNFFRIAIVR-HQGKPVAFANLLETDSRELASLDLMRVHPDAPKLTMEFLMLGLILHYKAQGHARFSLG 800
Cdd:COG2898 430 GFSLGRFDEDYLPRVRLAVARdADGRVVAFASFVPVYGREGWSLDLMRRRPDAPNGVMEFLFASLILWAKEEGYERFSLG 509
                       490       500       510       520       530       540       550
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15596117 801 MVPLAGLQPRRGAPLTQRLGALVFRRGEQFYNFQGLRRFKDKFQPDWEPRYLAVPAGLDPLVALADTAALIAGGLT 876
Cdd:COG2898 510 MAPLSGVGERGGAGPVERLLRLLYRHGERFYGFEGLRRFKEKFQPEWEPRYLAYPGGLSLPRILLALARAEGPGLR 585
LPG_synthase_C pfam09924
Phosphatidylglycerol lysyltransferase, C-terminal; This domain can be found in the C-terminal ...
565-853 5.57e-103

Phosphatidylglycerol lysyltransferase, C-terminal; This domain can be found in the C-terminal region of phosphatidylglycerol lysyltransferase mprF, which catalyzes the transfer of a lysyl group from L-lysyl-tRNA(Lys) to to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG). This domain can also be found in lysylphosphatidylglycerol biosynthesis bifunctional protein LysX, which is the two-domain lysyl-transferase (mprF)-lysyl-tRNA synthetase (lysU) protein is responsible for LPG production.


Pssm-ID: 430930 [Multi-domain]  Cd Length: 297  Bit Score: 321.14  E-value: 5.57e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   565 RHSDQPDGGLALTGDKALLF-HESDDAFLMYARRGRSMIALYDPIGPAMQRAELIWQFRDLCDLHHARPVFYQVRAENLP 643
Cdd:pfam09924   7 YGSEDSFANLALWRDKSYYFySPVGDALIAYRVEGGGALAFGDPIGDPEAWPEALEAFLELADDHGWRPAFYGVSEEGAE 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   644 FYMDIGLTALKLGEEARVDLLRFDLEnkGKEMKDLRYTWNRGQRDGLALEFHEPGQAP--LDELKAISDAWLGGKQVREK 721
Cdd:pfam09924  87 LYAELGLTEDRLGEEAVVDLEDFTLS--GKKFRKLRNAINRFERAGYTFEVEPITDVPelLDELLEISDEWLKQKEGTEK 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   722 GFSLGRFTPAYLNFFRIAIVRHQGKPVAFANLLETDSRELASLDLMRVHPDAPKLTMEFLMLGLILHYKAQGHARFSLGM 801
Cdd:pfam09924 165 GFSLGAFDEGYLLGLRGLLVRVEGKIVAFASGEPLNGRDTASLDLMRRDPDAPNGLMEFLNAELAEWLKEEGYEYVNLGF 244
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15596117   802 VPLAGLQPRRGAPLTQRLGALVFRRGEQFYNFQGLRRFKDKFQPDWEPRYLA 853
Cdd:pfam09924 245 APLSGLGERPGAPPLERLARLLYEHGERDYGFEGLRRAKLKYHPDWEPKYLA 296
AglD2 COG0392
Predicted membrane flippase AglD2/YbhN, UPF0104 family [Cell wall/membrane/envelope biogenesis] ...
68-305 1.59e-22

Predicted membrane flippase AglD2/YbhN, UPF0104 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440161  Cd Length: 289  Bit Score: 98.87  E-value: 1.59e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117  68 IADVPRPALLGALSATALGFVILLGYEWSASRFAGVTLPMRSLATGGFSAFaIGNAVGLSLLSGGSVRYRLYSRHGIGAA 147
Cdd:COG0392   1 LRAANPWWLLLALLLTLLSYLLLALRWRLLLRALGVKLPFRRLFLVSFIGY-FGNNIGPGALGGEAVRARLLSRRGVPAG 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117 148 EIARMTLFASLSLGCALPVLAALAALCDLDDAASALHLPRAL-VAVIAIAVLSLAVGLVAFLARHRLPGERPSPDSLLVR 226
Cdd:COG0392  80 KAAAIVALERLTDLLGLLLLAGLGLLFGPGALPGLGNLPGALlLLLLGLALLAAVLLYLLLLAFRPRLLLRLRRWKLLRK 159
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117 227 LGRRSLRLPGLRLSLLQLL--------ITALDVAAAATVLYLLLP---ETPPFAAFLLVYLLALAAGVLSHVPGGVGVFE 295
Cdd:COG0392 160 IREKLERFLEGLRRLRLSPrllllqllLSLLDWLLAALILYFLLPalgVDVSFLAVLAVFLLASLAGLLPPTPGGLGVFE 239
                       250
                ....*....|
gi 15596117 296 AVLLAAFAGQ 305
Cdd:COG0392 240 AALLLLLSLF 249
lysS PRK02983
bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX;
553-865 5.67e-20

bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX;


Pssm-ID: 235095 [Multi-domain]  Cd Length: 1094  Bit Score: 95.80  E-value: 5.67e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   553 NAEELQRAARIIRHSDQPD--GGLALTGDKALLFHESDDAFLMYARRGRSMIALYDPIGPAMQRAELIWQFRDLCDLHHA 630
Cdd:PRK02983  234 TGEDELAIRGLLLLYGEDDslGYFATRRDKSVVFAPSGRAAITYRVEVGVCLASGDPVGDPEAWPQAIDAWLALARTYGW 313
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   631 RPVFYQVRAENLPFYMDIGLTALKLGEEARVDLLRFDLenKGKEMKDLRYTWNRGQRDGLALEFHEPGQAPLDELKAIS- 709
Cdd:PRK02983  314 APAVMGASEAGARAYREAGLSALELGDEAILDTADFTL--SGPDMRPVRQAVTRVRRAGYTVRIRRHRDLPAEEMAQVIa 391
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   710 --DAWLGGKQvrEKGFS--LGRF-TPAYLNFFRIAIVRHQGKPVAFANLLETDSRELaSLDLMRVHPDAPKLTMEFLMLG 784
Cdd:PRK02983  392 raDAWRDTET--ERGFSmaLGRLgDPADGDCLLVEAHDADGQVVALLSFVPWGRRGL-SLDLMRRSPDAPNGVIELMVAE 468
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   785 LILHYKAQGHARFSLGMVPLAGL---QPRRGAPLTQRL--GALVFrrGEQFYNFQGLRRFKDKFQPDWEPRYLAVPAGLD 859
Cdd:PRK02983  469 LALEAESLGITRISLNFAVFRSAfeeGARLGAGPVLRLwrGLLLF--FSRWWQLESLYRSNVKYQPDWVPRYLCYEDARL 546

                  ....*..
gi 15596117   860 -PLVALA 865
Cdd:PRK02983  547 lPRVGVA 553
LPG_synthase_TM pfam03706
Lysylphosphatidylglycerol synthase TM region; LPG_synthase_TM is the N-terminal region of this ...
36-303 8.74e-03

Lysylphosphatidylglycerol synthase TM region; LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defensins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.


Pssm-ID: 461018  Cd Length: 302  Bit Score: 39.27  E-value: 8.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117    36 IGLVFTLLLFGLalvacyhLLREIDPGALHDAIADVPRPALLGALSATALGFVILLGYEWSASRFAGVTLPMRSLatggF 115
Cdd:pfam03706   3 LGLLLSALLLWF-------LLRGFDLSELAELLRSADPGWLLLALLLALLSLLLRALRWRLLLRALGARISFRRA----F 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   116 SAFAIGNAVGL---SLLSGGSVR-YRLYSRHGIGAAEIA------RMTLFASLSLGCALPVLAALAALCDLDDAASALHL 185
Cdd:pfam03706  72 RAYLIGYFANNvtpGRLGGEVVRaYLLKRREGLSLSKALasvvleRLLDLLTLLLLGLLALLLLLGLLLSGPAVLLTLAL 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596117   186 PRALVAVIAIAVLSLAVGLVAFLAR--HRLPGERPSPDSLLVRLGRRSLRLPGLRLSLLQLLITALDVAAAATVLYLL-- 261
Cdd:pfam03706 152 ALALLALLLLLLLLLLRRRPRALARvlLRLAALLSRFRGRLRSLERLLLSLSSPRRLLLAFLLSLLIWLLEALALYLLlr 231
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 15596117   262 -LPETPPFAAFLLVYLLALAAGVLSHVPGGVGVFEAVLLAAFA 303
Cdd:pfam03706 232 aLGLDLSLLLVLLLLLAATLAGALPPTPGGLGVREAAFVLLLG 274
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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