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Conserved domains on  [gi|15596137|ref|NP_249631|]
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hypothetical protein PA0940 [Pseudomonas aeruginosa PAO1]

Protein Classification

DUF2024 family protein( domain architecture ID 10560336)

DUF2024 family protein similar to Nitrosomonas europaea protein NE1680

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2024 pfam09630
Domain of unknown function (DUF2024); This protein of 86 residues is expressed in bacteria. It ...
 1-81 8.23e-41

Domain of unknown function (DUF2024); This protein of 86 residues is expressed in bacteria. It consists of four alpha helices and two beta strands. Its function is unknown. One UniProt entry gives the gene name as Traf5.


:

Pssm-ID: 430725  Cd Length: 81  Bit Score: 128.54  E-value: 8.23e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596137    1 MEVKIFDTHVRTRDGRYLHFDVLVTEELGARAGEFARRWLAGRGIDEADISQGHCSYCHSEIATAEVAEAIRLHGHYILP 80
Cdd:pfam09630  1 MKVHVFDTYVKTKDGKTMHFDVIVPEKDQEKAIEYAKEWLKSKGEEGADVTQKECRFCHSEEAPPEVEEAIKEQGYYIYE 80


                 .
gi 15596137   81 L 81
Cdd:pfam09630 81 M 81
 
Name Accession Description Interval E-value
DUF2024 pfam09630
Domain of unknown function (DUF2024); This protein of 86 residues is expressed in bacteria. It ...
 1-81 8.23e-41

Domain of unknown function (DUF2024); This protein of 86 residues is expressed in bacteria. It consists of four alpha helices and two beta strands. Its function is unknown. One UniProt entry gives the gene name as Traf5.


Pssm-ID: 430725  Cd Length: 81  Bit Score: 128.54  E-value: 8.23e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596137    1 MEVKIFDTHVRTRDGRYLHFDVLVTEELGARAGEFARRWLAGRGIDEADISQGHCSYCHSEIATAEVAEAIRLHGHYILP 80
Cdd:pfam09630  1 MKVHVFDTYVKTKDGKTMHFDVIVPEKDQEKAIEYAKEWLKSKGEEGADVTQKECRFCHSEEAPPEVEEAIKEQGYYIYE 80


                 .
gi 15596137   81 L 81
Cdd:pfam09630 81 M 81
 
Name Accession Description Interval E-value
DUF2024 pfam09630
Domain of unknown function (DUF2024); This protein of 86 residues is expressed in bacteria. It ...
 1-81 8.23e-41

Domain of unknown function (DUF2024); This protein of 86 residues is expressed in bacteria. It consists of four alpha helices and two beta strands. Its function is unknown. One UniProt entry gives the gene name as Traf5.


Pssm-ID: 430725  Cd Length: 81  Bit Score: 128.54  E-value: 8.23e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596137    1 MEVKIFDTHVRTRDGRYLHFDVLVTEELGARAGEFARRWLAGRGIDEADISQGHCSYCHSEIATAEVAEAIRLHGHYILP 80
Cdd:pfam09630  1 MKVHVFDTYVKTKDGKTMHFDVIVPEKDQEKAIEYAKEWLKSKGEEGADVTQKECRFCHSEEAPPEVEEAIKEQGYYIYE 80


                 .
gi 15596137   81 L 81
Cdd:pfam09630 81 M 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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