NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15596157|ref|NP_249651|]
View 

hypothetical protein PA0960 [Pseudomonas aeruginosa PAO1]

Protein Classification

SlyX family protein( domain architecture ID 10011361)

SlyX family protein similar to Pseudomonas aeruginosa protein SlyX homolog

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK00295 PRK00295
hypothetical protein; Provisional
 1-69 1.07e-29

hypothetical protein; Provisional


:

Pssm-ID: 166895  Cd Length: 68  Bit Score: 99.46  E-value: 1.07e-29
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15596157   1 MELDARMDDLECRQAFQDDTLQALNDVVVEQQRSIERLQLQVAALIKRLEDVQGLVGEAGEDeAPPPHY 69
Cdd:PRK00295  1 MSLEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMVGQFGSFEEE-APPPHY 68
 
Name Accession Description Interval E-value
PRK00295 PRK00295
hypothetical protein; Provisional
 1-69 1.07e-29

hypothetical protein; Provisional


Pssm-ID: 166895  Cd Length: 68  Bit Score: 99.46  E-value: 1.07e-29
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15596157   1 MELDARMDDLECRQAFQDDTLQALNDVVVEQQRSIERLQLQVAALIKRLEDVQGLVGEAGEDeAPPPHY 69
Cdd:PRK00295  1 MSLEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMVGQFGSFEEE-APPPHY 68
SlyX COG2900
Uncharacterized coiled-coil protein SlyX (sensitive to lysis X) [Function unknown];
3-69 8.41e-21

Uncharacterized coiled-coil protein SlyX (sensitive to lysis X) [Function unknown];


Pssm-ID: 442145 [Multi-domain]  Cd Length: 67  Bit Score: 76.76  E-value: 8.41e-21
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15596157  3 LDARMDDLECRQAFQDDTLQALNDVVVEQQRSIERLQLQVAALIKRLEDVQGLVGEAGEDEAPPPHY 69
Cdd:COG2900  1 LEERLEELEIRLAFQEDTIEELNDVVARQQREIDRLQRQLRLLAERLKELEPSLGASPAEEEPPPHY 67
SlyX pfam04102
SlyX; The SlyX protein has no known function. It is short less than 80 amino acids and is ...
 4-69 2.04e-20

SlyX; The SlyX protein has no known function. It is short less than 80 amino acids and is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C-terminus. The protein may be a coiled-coil structure.


Pssm-ID: 461173 [Multi-domain]  Cd Length: 66  Bit Score: 75.99  E-value: 2.04e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15596157    4 DARMDDLECRQAFQDDTLQALNDVVVEQQRSIERLQLQVAALIKRLEDVQGLVGEAGEDEAPPPHY 69
Cdd:pfam04102  1 EERLEELEIKLAFQEDTIEELNDVVAEQQRQIDRLQRQLRLLAERLKELEPSLGADPAEEEPPPHY 66
 
Name Accession Description Interval E-value
PRK00295 PRK00295
hypothetical protein; Provisional
 1-69 1.07e-29

hypothetical protein; Provisional


Pssm-ID: 166895  Cd Length: 68  Bit Score: 99.46  E-value: 1.07e-29
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15596157   1 MELDARMDDLECRQAFQDDTLQALNDVVVEQQRSIERLQLQVAALIKRLEDVQGLVGEAGEDeAPPPHY 69
Cdd:PRK00295  1 MSLEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMVGQFGSFEEE-APPPHY 68
SlyX COG2900
Uncharacterized coiled-coil protein SlyX (sensitive to lysis X) [Function unknown];
3-69 8.41e-21

Uncharacterized coiled-coil protein SlyX (sensitive to lysis X) [Function unknown];


Pssm-ID: 442145 [Multi-domain]  Cd Length: 67  Bit Score: 76.76  E-value: 8.41e-21
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15596157  3 LDARMDDLECRQAFQDDTLQALNDVVVEQQRSIERLQLQVAALIKRLEDVQGLVGEAGEDEAPPPHY 69
Cdd:COG2900  1 LEERLEELEIRLAFQEDTIEELNDVVARQQREIDRLQRQLRLLAERLKELEPSLGASPAEEEPPPHY 67
SlyX pfam04102
SlyX; The SlyX protein has no known function. It is short less than 80 amino acids and is ...
 4-69 2.04e-20

SlyX; The SlyX protein has no known function. It is short less than 80 amino acids and is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C-terminus. The protein may be a coiled-coil structure.


Pssm-ID: 461173 [Multi-domain]  Cd Length: 66  Bit Score: 75.99  E-value: 2.04e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15596157    4 DARMDDLECRQAFQDDTLQALNDVVVEQQRSIERLQLQVAALIKRLEDVQGLVGEAGEDEAPPPHY 69
Cdd:pfam04102  1 EERLEELEIKLAFQEDTIEELNDVVAEQQRQIDRLQRQLRLLAERLKELEPSLGADPAEEEPPPHY 66
PRK04406 PRK04406
hypothetical protein; Provisional
 2-69 2.26e-11

hypothetical protein; Provisional


Pssm-ID: 235296  Cd Length: 75  Bit Score: 53.40  E-value: 2.26e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15596157   2 ELDARMDDLECRQAFQDDTLQALNDVVVEQQRSIERLQLQVAALIKRLEDVQGLVGEAGEDEAPPPHY 69
Cdd:PRK04406  8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDSSNLADPAEETPPPHY 75
PRK02793 PRK02793
phi X174 lysis protein; Provisional
 3-69 1.17e-10

phi X174 lysis protein; Provisional


Pssm-ID: 179472  Cd Length: 72  Bit Score: 51.45  E-value: 1.17e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15596157   3 LDARMDDLECRQAFQDDTLQALNDVVVEQQRSIERLQLQVAALIKRLEDVQGLVGEAGEDEAPPPHY 69
Cdd:PRK02793  6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPSNIASQAEETPPPHY 72
PRK02119 PRK02119
hypothetical protein; Provisional
 2-69 1.67e-10

hypothetical protein; Provisional


Pssm-ID: 235004  Cd Length: 73  Bit Score: 50.98  E-value: 1.67e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15596157   2 ELDARMDDLECRQAFQDDTLQALNDVVVEQQRSIERLQLQVAALIKRLEDVQGLVGEAGEDEAPPPHY 69
Cdd:PRK02119  6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPSNIASQAEETPPPHY 73
PRK04325 PRK04325
hypothetical protein; Provisional
 2-69 2.83e-07

hypothetical protein; Provisional


Pssm-ID: 179824  Cd Length: 74  Bit Score: 42.97  E-value: 2.83e-07
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15596157   2 ELDARMDDLECRQAFQDDTLQALNDVVVEQQRSIERLQLQVAALIKRLEDVQGLVGEAGE-DEAPPPHY 69
Cdd:PRK04325  6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANPDAAEPYSlRDEIPPHY 74
PRK00846 PRK00846
hypothetical protein; Provisional
 2-69 2.13e-04

hypothetical protein; Provisional


Pssm-ID: 179141  Cd Length: 77  Bit Score: 35.63  E-value: 2.13e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15596157   2 ELDARMDDLECRQAFQDDTLQALNDVVVEQQRSIERLQLQVAALIKRLEDVQGLVGEAGEDEAPPPHY 69
Cdd:PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTLFADPADEPPPPHY 77
PRK00736 PRK00736
hypothetical protein; Provisional
 1-69 3.71e-03

hypothetical protein; Provisional


Pssm-ID: 179103  Cd Length: 68  Bit Score: 32.11  E-value: 3.71e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15596157   1 MELDARMDDLECRQAFQDDTLQALNDVVVEQQRSIERLQLQVAALIKRLEDVQglvgEAGEDEAP---PPHY 69
Cdd:PRK00736  1 MDAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE----EQAAPDVPvtkPPHW 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH