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Conserved domains on  [gi|15596316|ref|NP_249810|]
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hypothetical protein PA1119 [Pseudomonas aeruginosa PAO1]

Protein Classification

OmpA family protein( domain architecture ID 11458387)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0009279|GO:0015288|GO:0042834
PubMed:  22986056|17559395
SCOP:  4001470
TCDB:  1.B.6

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09967 super family cl40716
OmpA family protein;
10-165 3.73e-46

OmpA family protein;


The actual alignment was detected with superfamily member PRK09967:

Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 148.20  E-value: 3.73e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   10 RLLALALFSLVLgLAGCQTkpPQTGLSAEQIAVLQEQGFELRDEGWEFGMSSKVLFGNNLDRLNPDSRNTLTKIARALLA 89
Cdd:PRK09967   4 HLVAPLIFTSLI-LTGCQS--PQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLAS 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15596316   90 VDIDKVRLEGHTDNYGDEGYNQKLSERRAESVAAVFRE-AGMPAANIEVRGLGMSKPVADNKTRAGRSENRRVAIIV 165
Cdd:PRK09967  81 TGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMgGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVI 157
 
Name Accession Description Interval E-value
PRK09967 PRK09967
OmpA family protein;
10-165 3.73e-46

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 148.20  E-value: 3.73e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   10 RLLALALFSLVLgLAGCQTkpPQTGLSAEQIAVLQEQGFELRDEGWEFGMSSKVLFGNNLDRLNPDSRNTLTKIARALLA 89
Cdd:PRK09967   4 HLVAPLIFTSLI-LTGCQS--PQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLAS 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15596316   90 VDIDKVRLEGHTDNYGDEGYNQKLSERRAESVAAVFRE-AGMPAANIEVRGLGMSKPVADNKTRAGRSENRRVAIIV 165
Cdd:PRK09967  81 TGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMgGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVI 157
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 63-165 4.54e-40

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 131.14  E-value: 4.54e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316  63 VLFGNNLDRLNPDSRNTLTKIARALLAVDIDKVRLEGHTDNYGDEGYNQKLSERRAESVAAVFREAGMPAANIEVRGLGM 142
Cdd:cd07185   4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                        90       100
                ....*....|....*....|...
gi 15596316 143 SKPVADNKTRAGRSENRRVAIIV 165
Cdd:cd07185  84 SRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 28-165 3.20e-37

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 129.52  E-value: 3.20e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316  28 TKPPQTGLSAEQIAVLQEQGFELRDEGWEFGMSSKVLFGNNLDRLNPDSRNTLTKIARALLAVDIDKVRLEGHTDNYGDE 107
Cdd:COG2885 154 DSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSD 233

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15596316 108 GYNQKLSERRAESVAAVFREAGMPAANIEVRGLGMSKPVADNKTRAGRSENRRVAIIV 165
Cdd:COG2885 234 AYNLALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVV 291
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 65-158 6.72e-23

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 87.03  E-value: 6.72e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316    65 FGNNLDRLNPDSRNTLTKIARALLAVD-IDKVRLEGHTDNYGDEGYNQKLSERRAESVAAVFREAGMPAANIEVRGLGMS 143
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPElKNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 15596316   144 KPVADNKTRAGRSEN 158
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 64-165 4.81e-22

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 85.82  E-value: 4.81e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316    64 LFGNNLDRLNPDSRNTLTKIARALLAVDiDKVRLEGHTDN-------YGDegyNQKLSERRAESVAAVFREAGMPAANIE 136
Cdd:TIGR03350  33 LFASGSAEVRAEFEPLLLRIAKALAAVP-GRITVVGHTDNvpirtarFPS---NWHLSEARAKAVADVLAQAGGPAGRVR 108

                          90       100
                  ....*....|....*....|....*....
gi 15596316   137 VRGLGMSKPVADNKTRAGRSENRRVAIIV 165
Cdd:TIGR03350 109 AEGRGDSEPIASNATAAGRARNRRVEIDV 137
 
Name Accession Description Interval E-value
PRK09967 PRK09967
OmpA family protein;
10-165 3.73e-46

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 148.20  E-value: 3.73e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   10 RLLALALFSLVLgLAGCQTkpPQTGLSAEQIAVLQEQGFELRDEGWEFGMSSKVLFGNNLDRLNPDSRNTLTKIARALLA 89
Cdd:PRK09967   4 HLVAPLIFTSLI-LTGCQS--PQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLAS 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15596316   90 VDIDKVRLEGHTDNYGDEGYNQKLSERRAESVAAVFRE-AGMPAANIEVRGLGMSKPVADNKTRAGRSENRRVAIIV 165
Cdd:PRK09967  81 TGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMgGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVI 157
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 63-165 4.54e-40

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 131.14  E-value: 4.54e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316  63 VLFGNNLDRLNPDSRNTLTKIARALLAVDIDKVRLEGHTDNYGDEGYNQKLSERRAESVAAVFREAGMPAANIEVRGLGM 142
Cdd:cd07185   4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                        90       100
                ....*....|....*....|...
gi 15596316 143 SKPVADNKTRAGRSENRRVAIIV 165
Cdd:cd07185  84 SRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 28-165 3.20e-37

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 129.52  E-value: 3.20e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316  28 TKPPQTGLSAEQIAVLQEQGFELRDEGWEFGMSSKVLFGNNLDRLNPDSRNTLTKIARALLAVDIDKVRLEGHTDNYGDE 107
Cdd:COG2885 154 DSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSD 233

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15596316 108 GYNQKLSERRAESVAAVFREAGMPAANIEVRGLGMSKPVADNKTRAGRSENRRVAIIV 165
Cdd:COG2885 234 AYNLALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVV 291
MotB COG1360
Flagellar motor protein MotB [Cell motility];
35-165 2.31e-26

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 97.99  E-value: 2.31e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316  35 LSAEQIAVLQEQG---FELRDEGWEFGMSSKVLFGNNLDRLNPDSRNTLTKIARALLAVDiDKVRLEGHTDN--YGDEGY 109
Cdd:COG1360  30 ALSSALEENLLSGqveVRITEEGLVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVP-NRIRVEGHTDNvpISTARF 108

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15596316 110 --NQKLSERRAESVAAVFREAGMPAANIEVRGLGMSKPVADNKTRAGRSENRRVAIIV 165
Cdd:COG1360 109 psNWELSAARAAAVVRYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVI 166
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 65-158 6.72e-23

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 87.03  E-value: 6.72e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316    65 FGNNLDRLNPDSRNTLTKIARALLAVD-IDKVRLEGHTDNYGDEGYNQKLSERRAESVAAVFREAGMPAANIEVRGLGMS 143
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPElKNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 15596316   144 KPVADNKTRAGRSEN 158
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 64-165 4.81e-22

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 85.82  E-value: 4.81e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316    64 LFGNNLDRLNPDSRNTLTKIARALLAVDiDKVRLEGHTDN-------YGDegyNQKLSERRAESVAAVFREAGMPAANIE 136
Cdd:TIGR03350  33 LFASGSAEVRAEFEPLLLRIAKALAAVP-GRITVVGHTDNvpirtarFPS---NWHLSEARAKAVADVLAQAGGPAGRVR 108

                          90       100
                  ....*....|....*....|....*....
gi 15596316   137 VRGLGMSKPVADNKTRAGRSENRRVAIIV 165
Cdd:TIGR03350 109 AEGRGDSEPIASNATAAGRARNRRVEIDV 137
PRK10510 PRK10510
OmpA family lipoprotein;
59-163 6.89e-20

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 82.62  E-value: 6.89e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   59 MSSKVLFGNNLDRLNPDSRNTLTKIARALLAVDIDKVRLEGHTDNYGDEGYNQKLSERRAESVAAVFREAGMPAANIEVR 138
Cdd:PRK10510 110 MPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQ 189

                         90       100
                 ....*....|....*....|....*
gi 15596316  139 GLGMSKPVADNKTRAGRSENRRVAI 163
Cdd:PRK10510 190 GMGPANPIASNSTAEGKAQNRRVEI 214
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 62-165 7.22e-19

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 76.83  E-value: 7.22e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316    62 KVLFGNNLDRLNPDSRNTLTKIARALLAVDIDKVRLEGHTDNYGDEGYNQKLSERRAESVAAVFREAGMPAANIEVRGLG 141
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 15596316   142 MSKPVADNKTRAGRSENRRVAIIV 165
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
PRK08126 PRK08126
hypothetical protein; Provisional
 71-165 5.22e-18

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 79.74  E-value: 5.22e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   71 RLNPDSRNTLTKIARALLAVDiDKVRLEGHTDNY----GDEGYNQKLSERRAESVAAVFREAGMPAANIEVRGLGMSKPV 146
Cdd:PRK08126 333 TVNPAMGPLIAKIAREIARVG-GKVTVTGHTDNQpirsAQFASNLVLSEKRAAQVAQMLQSAGVPASRLEAVGKGDAQPV 411

                         90
                 ....*....|....*....
gi 15596316  147 ADNKTRAGRSENRRVAIIV 165
Cdd:PRK08126 412 ADNRTPQGRAQNRRVEITV 430
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 51-165 5.69e-17

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 75.82  E-value: 5.69e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   51 RDEGW-EFGMSSKVLFGNNLDRLNPDSRNTLTKIARALLAVDIDkVRLEGHTDN-------YGDegyNQKLSERRAESVA 122
Cdd:PRK09038 122 RNELWiEIEINSSLLFGSGDAMLSDQAFAILEKVAEVLKPAPNP-IHVEGFTDNvpiataqFPS---NWELSAARAASVV 197

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 15596316  123 AVFREAGMPAANIEVRGLGMSKPVADNKTRAGRSENRRVAIIV 165
Cdd:PRK09038 198 RLLADDGVAPSRLAAVGYGEFQPVADNDTAEGRARNRRVVLVI 240
PRK10808 PRK10808
outer membrane protein A; Reviewed
 57-165 2.96e-16

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 74.34  E-value: 2.96e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   57 FGMSSKVLFGNNLDRLNPDSRNTLTKIARALLAVDID--KVRLEGHTDNYGDEGYNQKLSERRAESVAAVFREAGMPAAN 134
Cdd:PRK10808 220 FTLKSDVLFNFNKATLKPEGQQALDQLYSQLSNLDPKdgSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADK 299

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 15596316  135 IEVRGLGMSKPVADNK--TRAGRSE-------NRRVAIIV 165
Cdd:PRK10808 300 ISARGMGKSNPVTGNTcdNVKPRAAlidclapDRRVEIEV 339
motB PRK08944
flagellar motor protein MotB; Reviewed
 72-165 5.28e-12

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 62.33  E-value: 5.28e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   72 LNPDSRNTLTKIARALlaVDID-KVRLEGHTDNYG--DEGY--NQKLSERRAESVA-AVFREAGMPAANIEVRGLGMSKP 145
Cdd:PRK08944 190 LQPKFKPVVRKIGELL--KDVPgIITVSGHTDNVPisSELYrsNWDLSSARAVAVAhELLKVKGFDPQRLKVVGMADTQP 267

                         90       100
                 ....*....|....*....|
gi 15596316  146 VADNKTRAGRSENRRVAIIV 165
Cdd:PRK08944 268 LVPNDTAENRARNRRVEIII 287
PRK06925 PRK06925
flagellar motor protein MotB;
43-165 6.52e-12

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 61.32  E-value: 6.52e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   43 LQEQGFELRDE-GWEFGMSSKVLFGNNLDRLNPDSRNTLTKIARALLAVDIDkVRLEGHTDNYGDEGY----NQKLSERR 117
Cdd:PRK06925  99 LKSVITAKRDErGVVLVLQEAVLFETGEADILKQAEPFLHKIGVLLSTIPND-IKVEGHTDSRPISTYrypsNWELSAAR 177

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 15596316  118 AESVAAVFREA-GMPAANIEVRGLGMSKPVADNKTRAGRSENRRVAIIV 165
Cdd:PRK06925 178 ASSVIRYFTSKeKLDSSRFIAVGYADTKPVVPNTTEENMQENRRVEIVI 226
PRK09040 PRK09040
hypothetical protein; Provisional
 58-163 3.51e-11

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 59.26  E-value: 3.51e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   58 GMSSKVLFGNNLDRLNPDSRNTLTKIARAL---LAVDIDKVRLEGHTDNY----GDEGY--NQKLSERRAESVAAVFREA 128
Cdd:PRK09040  85 GISGSVLFALNSDQLQPEGRELLKSLAGPLaayLRARDEILMVSGFTDDQpvraGNRRFadNWELSAQRALTVTRALIDA 164

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 15596316  129 GMPAANIEVRGLGMSKPVADNKTRAGRSENRRVAI 163
Cdd:PRK09040 165 GVPASSVFAAAFGSEQPVASNADDEGRAKNRRVEI 199
PRK09039 PRK09039
peptidoglycan -binding protein;
51-161 3.44e-10

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 57.28  E-value: 3.44e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   51 RDEGWEFGMSSKVLFGNNLDRLNPDSRNTLTKIARALLAV------DIDKV-RLEGHTDN--------YGDegyNQKLSE 115
Cdd:PRK09039 214 RIVGDRFVFQSEVLFPTGSAELNPEGQAEIAKLAAALIELakeippEINWVlRVDGHTDNvplsgtgrFRD---NWELSS 290

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 15596316  116 RRAESVAAVFREAGMPAANIEVRGLGMSKPVADNKTRAGRSENRRV 161
Cdd:PRK09039 291 ARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPEARARNRRI 336
motB PRK06667
flagellar motor protein MotB; Validated
 74-168 1.39e-09

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 55.19  E-value: 1.39e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   74 PDSRNTLTKIARAL--LAVDIDKVRLEGHTDNY-----GDEGYNQKLSERRAESVAAVFREAG-MPAANIEVRGLGMSKP 145
Cdd:PRK06667 139 EENRETLQKIASFIgfLDLAGRNFRIEGHTDNVdvnpeGPWKSNWELSGARAVNMLEYILNYGdQSESWFQVSGFAGSRP 218

                         90       100
                 ....*....|....*....|...
gi 15596316  146 VADNKTRAGRSENRRVAIIVPAE 168
Cdd:PRK06667 219 LATEDTPEGRAYNRRIDIVILTD 241
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
24-165 6.01e-09

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 52.56  E-value: 6.01e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   24 AGCQTKPPQTGLSAEQIAVLQEQgfelrdegwEFGMSSKVLFGNNLDRLNPDSRNTLTKIARALLAVDIDKVRLEGHTDN 103
Cdd:PRK10802  41 TGMDANGGNGNMSSEEQARLQMQ---------QLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADE 111

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15596316  104 YGDEGYNQKLSERRAESVAAVFREAGMPAANIEVRGLGMSKPVADNKTRAGRSENRRvAIIV 165
Cdd:PRK10802 112 RGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR-AVLV 172
PRK07033 PRK07033
DotU family type VI secretion system protein;
80-165 1.32e-08

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 52.74  E-value: 1.32e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   80 LTKIARALLAVDiDKVRLEGHTDNYGDEGY----NQKLSERRAESVAAVFREAGMPAANIEVRGLGMSKPVADNKTRAGR 155
Cdd:PRK07033 333 LARVADALNQVK-GNVLVTGYSDNVPIRTArfpsNWELSQARAQAVRALLAARLGQPERVTAEGRGDSDPVAPNDSAENR 411

                         90
                 ....*....|
gi 15596316  156 SENRRVAIIV 165
Cdd:PRK07033 412 ARNRRVEITL 421
motB PRK07734
flagellar motor protein MotB; Reviewed
 50-166 2.20e-08

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 51.67  E-value: 2.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   50 LRDEGWEFGMSSKVLFGNNLDRLNPDSRNTLTKIARALLAVDIDKVRLEGHTDNY----GDEGYNQKLSERRAESVAAVF 125
Cdd:PRK07734 131 LTEEGLLITILDNILFDSGKADVRLEDLPLAKEISNLLVSNPPRNITISGHTDNVpianAQFASNWELSVMRAVNFMQVL 210

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 15596316  126 RE-AGMPAANIEVRGLGMSKPVADNKTRAGRSENRRVAI-IVP 166
Cdd:PRK07734 211 LEnKELDPEKFSAKGYGEYKPIASNDTAEGRAKNRRVEVlILP 253
motB PRK09041
motility protein MotB;
70-165 5.11e-07

motility protein MotB;


Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 48.02  E-value: 5.11e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   70 DRLNPDSRNTLTKIARALLAVDiDKVRLEGHTDNY----GDEGY-NQKLSERRAEsvaAVFRE---AGMPAANIeVRGLG 141
Cdd:PRK09041 170 AEVEPYMRDILREIAPVLNDVP-NRISLSGHTDATpyanGEKGYsNWELSADRAN---ASRRElvaGGMDEGKV-LRVVG 244

                         90       100
                 ....*....|....*....|....
gi 15596316  142 MSKPVADNKTRAGRSENRRVAIIV 165
Cdd:PRK09041 245 LASTMLLDKKDPLNPVNRRISIVV 268
PRK07034 PRK07034
hypothetical protein; Provisional
 42-164 2.56e-06

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 46.32  E-value: 2.56e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   42 VLQEQGFELRDE--GWEFGMSSKVLFGNNLDRLNPD--SRNTLTKIARALLAVDIDkVRLEGHTDN---YGDEGYNQ-KL 113
Cdd:PRK07034 373 ILNEGWLEVRKDprGWLLIFTSDGAFRTGEATLSEEfiNKKNIERLGLALAPWPGD-IEVIGHTDNkpfRSTSGNNNlKL 451

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 15596316  114 SERRAESVAAVFREAGM----PAANIEVRGLGMSKPVADNKTRAGRSENRRVAII 164
Cdd:PRK07034 452 SAARASVVADKLRESTQinetHQREISAIGRGESDPLADNATEEGRKRNRRVDIL 506
PRK14693 PRK14693
hypothetical protein; Provisional
 53-164 1.54e-05

hypothetical protein; Provisional


Pssm-ID: 173156 [Multi-domain]  Cd Length: 552  Bit Score: 43.98  E-value: 1.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   53 EGWEFGMSSKVLFGNNLDRLNPDSRNTLTKIARALLAVDIDkVRLEGHTDN----YGDEGYNQKLSERRAESVAAVFREA 128
Cdd:PRK14693 364 QGWLLVFKSDGAFDVGKANVRADFMHNIERLGLAFAPWPGD-LEVIGHTDSrpirTSEFPDNQALSEARARNVADELRKT 442

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 15596316  129 GMPAA----------NIEVRGLGMSKPVADNKTRAGRSENRRVAII 164
Cdd:PRK14693 443 ALPGGarapenavqrNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 488
PRK06778 PRK06778
hypothetical protein; Validated
 71-165 1.96e-04

hypothetical protein; Validated


Pssm-ID: 235860 [Multi-domain]  Cd Length: 289  Bit Score: 40.30  E-value: 1.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596316   71 RLNPDSRNTLTKIARALLAVDiDKVRLEGHTD--NYGDEGYNQ-KLSERRAESVAAVFREAGMPAANIeVRGLGMSKPVA 147
Cdd:PRK06778 162 QIMPFFKTLLVELAPVFDSLD-NKIIITGHTDamAYKNNIYNNwNLSGDRALSARRVLEEAGMPEDKV-MQVSAMADQML 239

                         90
                 ....*....|....*...
gi 15596316  148 DNKTRAGRSENRRVAIIV 165
Cdd:PRK06778 240 LDAKNPQSAGNRRIEIMV 257
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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