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Conserved domains on  [gi|15596599|ref|NP_250093|]
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hypothetical protein PA1402 [Pseudomonas aeruginosa PAO1]

Protein Classification

O-methyltransferase( domain architecture ID 11467877)

O-methyltransferase of the class I-like SAM-binding methyltransferase superfamily, such as catechol O-methyltransferases that can use various catechol-like compounds

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TrmR COG4122
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; ...
65-221 5.57e-48

tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; tRNA 5-hydroxyU34 O-methylase TrmR/YrrM is part of the Pathway/BioSystem: tRNA modification


:

Pssm-ID: 443298  Cd Length: 173  Bit Score: 155.34  E-value: 5.57e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599  65 RETGCLLYMLARSSSARSIVEFGTSFGLSTLHLAAALRDngGGRLIGSEFEPSKAERARRNLAAGGLLDLVELREGDALQ 144
Cdd:COG4122   2 PEQGRLLYLLARLLGAKRILEIGTGTGYSTLWLARALPD--DGRLTTIEIDPERAAIARENFARAGLADRIRLILGDALE 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599 145 TLAKDLPDSIDLVLLDGAKALYPEVLALLESRLRPGALVIADNAEHSP----------------EYLAHVRSPANGYLST 208
Cdd:COG4122  80 VLPRLADGPFDLVFIDADKSNYPDYLELALPLLRPGGLIVADNVLWHGrvadparrdpstrairEFNEYLREDPRLESVL 159
                       170
                ....*....|....
gi 15596599 209 -PFAEDVELSMRLG 221
Cdd:COG4122 160 lPIGDGLLLARKRG 173
 
Name Accession Description Interval E-value
TrmR COG4122
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; ...
65-221 5.57e-48

tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; tRNA 5-hydroxyU34 O-methylase TrmR/YrrM is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443298  Cd Length: 173  Bit Score: 155.34  E-value: 5.57e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599  65 RETGCLLYMLARSSSARSIVEFGTSFGLSTLHLAAALRDngGGRLIGSEFEPSKAERARRNLAAGGLLDLVELREGDALQ 144
Cdd:COG4122   2 PEQGRLLYLLARLLGAKRILEIGTGTGYSTLWLARALPD--DGRLTTIEIDPERAAIARENFARAGLADRIRLILGDALE 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599 145 TLAKDLPDSIDLVLLDGAKALYPEVLALLESRLRPGALVIADNAEHSP----------------EYLAHVRSPANGYLST 208
Cdd:COG4122  80 VLPRLADGPFDLVFIDADKSNYPDYLELALPLLRPGGLIVADNVLWHGrvadparrdpstrairEFNEYLREDPRLESVL 159
                       170
                ....*....|....
gi 15596599 209 -PFAEDVELSMRLG 221
Cdd:COG4122 160 lPIGDGLLLARKRG 173
Methyltransf_24 pfam13578
Methyltransferase domain; This family appears to be a methyltransferase domain.
84-187 2.32e-20

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 433324 [Multi-domain]  Cd Length: 106  Bit Score: 82.36  E-value: 2.32e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599    84 VEFGTSFGLSTLHLAAALRDNGGGRLIGSEFEPsKAERARRNLAAGGLLDLVELREGDALQTLAKDLPDSIDLVLLDG-- 161
Cdd:pfam13578   1 VEIGTYSGVSTLWLAAALRDNGLGRLTAVDPDP-GAEEAGALLRKAGLDDRVRLIVGDSREALPSLADGPIDLLFIDGdh 79
                          90       100
                  ....*....|....*....|....*..
gi 15596599   162 -AKALYPEVLALLEsRLRPGALVIADN 187
Cdd:pfam13578  80 tYEAVLNDLELWLP-RLAPGGVILFHD 105
PLN02476 PLN02476
O-methyltransferase
31-187 1.53e-08

O-methyltransferase


Pssm-ID: 178094  Cd Length: 278  Bit Score: 53.53  E-value: 1.53e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599   31 LADLSEAELKRlmgsktEYREFYGRLKDLALPVSRETGCLLYMLARSSSARSIVEFGTSFGLSTLHLAAALRDNGGgrLI 110
Cdd:PLN02476  76 LSNVREPKILR------QLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGC--LV 147
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599  111 GSEFEPSKAERARRNLAAGGLLDLVELREGDALQTLAKDLPD----SIDLVLLDGAKALYPEVLALLESRLRPGALVIAD 186
Cdd:PLN02476 148 ACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNgegsSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD 227

                 .
gi 15596599  187 N 187
Cdd:PLN02476 228 N 228
 
Name Accession Description Interval E-value
TrmR COG4122
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; ...
65-221 5.57e-48

tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; tRNA 5-hydroxyU34 O-methylase TrmR/YrrM is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443298  Cd Length: 173  Bit Score: 155.34  E-value: 5.57e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599  65 RETGCLLYMLARSSSARSIVEFGTSFGLSTLHLAAALRDngGGRLIGSEFEPSKAERARRNLAAGGLLDLVELREGDALQ 144
Cdd:COG4122   2 PEQGRLLYLLARLLGAKRILEIGTGTGYSTLWLARALPD--DGRLTTIEIDPERAAIARENFARAGLADRIRLILGDALE 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599 145 TLAKDLPDSIDLVLLDGAKALYPEVLALLESRLRPGALVIADNAEHSP----------------EYLAHVRSPANGYLST 208
Cdd:COG4122  80 VLPRLADGPFDLVFIDADKSNYPDYLELALPLLRPGGLIVADNVLWHGrvadparrdpstrairEFNEYLREDPRLESVL 159
                       170
                ....*....|....
gi 15596599 209 -PFAEDVELSMRLG 221
Cdd:COG4122 160 lPIGDGLLLARKRG 173
Methyltransf_24 pfam13578
Methyltransferase domain; This family appears to be a methyltransferase domain.
84-187 2.32e-20

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 433324 [Multi-domain]  Cd Length: 106  Bit Score: 82.36  E-value: 2.32e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599    84 VEFGTSFGLSTLHLAAALRDNGGGRLIGSEFEPsKAERARRNLAAGGLLDLVELREGDALQTLAKDLPDSIDLVLLDG-- 161
Cdd:pfam13578   1 VEIGTYSGVSTLWLAAALRDNGLGRLTAVDPDP-GAEEAGALLRKAGLDDRVRLIVGDSREALPSLADGPIDLLFIDGdh 79
                          90       100
                  ....*....|....*....|....*..
gi 15596599   162 -AKALYPEVLALLEsRLRPGALVIADN 187
Cdd:pfam13578  80 tYEAVLNDLELWLP-RLAPGGVILFHD 105
Methyltransf_3 pfam01596
O-methyltransferase; Members of this family are O-methyltransferases. The family includes ...
48-188 1.43e-10

O-methyltransferase; Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production.


Pssm-ID: 396257 [Multi-domain]  Cd Length: 203  Bit Score: 58.66  E-value: 1.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599    48 EYREFYGRLKDLALPVSRETGCLLYMLARSSSARSIVEFGTSFGLSTLHLAAALRDNggGRLIGSEFEPSKAERARRNLA 127
Cdd:pfam01596  12 ELREETAKLPLAPMQVSPDEGQFLGMLVKLTGAKNVLEIGVFTGYSALAMALALPED--GKITAIDIDPEAYEIAKKFIQ 89
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15596599   128 AGGLLDLVELREGDALQTLAKDLPDS----IDLVLLDGAKALYPEVLALLESRLRPGALVIADNA 188
Cdd:pfam01596  90 KAGVAHKISFILGPALKVLEQLTQDKplpeFDFIFIDADKSNYPNYYERLLELLKVGGLMAIDNT 154
PLN02476 PLN02476
O-methyltransferase
31-187 1.53e-08

O-methyltransferase


Pssm-ID: 178094  Cd Length: 278  Bit Score: 53.53  E-value: 1.53e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599   31 LADLSEAELKRlmgsktEYREFYGRLKDLALPVSRETGCLLYMLARSSSARSIVEFGTSFGLSTLHLAAALRDNGGgrLI 110
Cdd:PLN02476  76 LSNVREPKILR------QLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGC--LV 147
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599  111 GSEFEPSKAERARRNLAAGGLLDLVELREGDALQTLAKDLPD----SIDLVLLDGAKALYPEVLALLESRLRPGALVIAD 186
Cdd:PLN02476 148 ACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNgegsSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD 227

                 .
gi 15596599  187 N 187
Cdd:PLN02476 228 N 228
Gcd14 COG2519
tRNA A58 N-methylase Trm61 [Translation, ribosomal structure and biogenesis]; tRNA A58 ...
72-185 8.04e-08

tRNA A58 N-methylase Trm61 [Translation, ribosomal structure and biogenesis]; tRNA A58 N-methylase Trm61 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 442009 [Multi-domain]  Cd Length: 249  Bit Score: 51.31  E-value: 8.04e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599  72 YMLARS---SSARsIVEFGTSFGLSTLHLAAALRDNGggRLIGSEFEPSKAERARRNLAAGGLLDLVELREGDalqtLAK 148
Cdd:COG2519  82 YIIARLdifPGAR-VLEAGTGSGALTLALARAVGPEG--KVYSYERREDFAEIARKNLERFGLPDNVELKLGD----IRE 154
                        90       100       110
                ....*....|....*....|....*....|....*....
gi 15596599 149 DLPD-SIDLVLLDgakALYP-EVLALLESRLRPGALVIA 185
Cdd:COG2519 155 GIDEgDVDAVFLD---MPDPwEALEAVAKALKPGGVLVA 190
SmtA COG0500
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ...
70-184 1.12e-07

SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 440266 [Multi-domain]  Cd Length: 199  Bit Score: 50.30  E-value: 1.12e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599  70 LLYMLARSSSARSIVEFGTSFGLSTLHLAAALrdngGGRLIGSEFEPSKAERARRNLAAGGlLDLVELREGDALQTLAKD 149
Cdd:COG0500  17 LLALLERLPKGGRVLDLGCGTGRNLLALAARF----GGRVIGIDLSPEAIALARARAAKAG-LGNVEFLVADLAELDPLP 91
                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 15596599 150 LPdSIDLVLLDGA-----KALYPEVLALLESRLRPGALVI 184
Cdd:COG0500  92 AE-SFDLVVAFGVlhhlpPEEREALLRELARALKPGGVLL 130
RsmD COG0742
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ...
123-193 5.40e-07

16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440505 [Multi-domain]  Cd Length: 183  Bit Score: 48.15  E-value: 5.40e-07
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15596599 123 RRNLAAGGLLDLVELREGDALQTLAKDLPDSIDLVLLDG--AKALYPEVLALLESR--LRPGALVIadnAEHSPE 193
Cdd:COG0742  81 RKNLEKLGLEDRARVIRGDALRFLKRLAGEPFDLVFLDPpyAKGLLEKALELLAENglLAPGGLIV---VEHSKR 152
TrmN6 COG4123
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ...
68-158 6.41e-07

tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443299 [Multi-domain]  Cd Length: 238  Bit Score: 48.60  E-value: 6.41e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599  68 GCLLYMLARSSSARSIVEFGTSFGLSTLHLAAalrDNGGGRLIGSEFEPSKAERARRNLAAGGLLDLVELREGDALQTLA 147
Cdd:COG4123  26 AVLLAAFAPVKKGGRVLDLGTGTGVIALMLAQ---RSPGARITGVEIQPEAAELARRNVALNGLEDRITVIHGDLKEFAA 102
                        90
                ....*....|.
gi 15596599 148 KDLPDSIDLVL 158
Cdd:COG4123 103 ELPPGSFDLVV 113
cbiT PRK00377
cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
91-186 4.00e-06

cobalt-precorrin-6Y C(15)-methyltransferase; Provisional


Pssm-ID: 234740  Cd Length: 198  Bit Score: 45.94  E-value: 4.00e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599   91 GLSTLHLAAALRDNGGGRLIGSEFEPSKAERARRNLAAGGLLDLVELREGDALQTLAKdLPDSIDLVLLDGAKALYPEVL 170
Cdd:PRK00377  50 GTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT-INEKFDRIFIGGGSEKLKEII 128
                         90
                 ....*....|....*.
gi 15596599  171 ALLESRLRPGALVIAD 186
Cdd:PRK00377 129 SASWEIIKKGGRIVID 144
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
83-180 2.25e-05

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 41.78  E-value: 2.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599    83 IVEFGTSFGLSTLHLAAAlrdnGGGRLIGSEFEPSKAERARRNLAAGGLldLVELREGDALQTLAKDlpDSIDLVLLDGA 162
Cdd:pfam13649   1 VLDLGCGTGRLTLALARR----GGARVTGVDLSPEMLERARERAAEAGL--NVEFVQGDAEDLPFPD--GSFDLVVSSGV 72
                          90       100
                  ....*....|....*....|...
gi 15596599   163 -----KALYPEVLALLESRLRPG 180
Cdd:pfam13649  73 lhhlpDPDLEAALREIARVLKPG 95
PLN02589 PLN02589
caffeoyl-CoA O-methyltransferase
48-206 8.08e-05

caffeoyl-CoA O-methyltransferase


Pssm-ID: 166230  Cd Length: 247  Bit Score: 42.29  E-value: 8.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599   48 EYREFYGRLKDLALPVSRETGCLLYMLARSSSARSIVEFGTSFGLSTLHLAAALRDNggGRLIGSEFEPSKAERARRNLA 127
Cdd:PLN02589  48 ELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPED--GKILAMDINRENYELGLPVIQ 125
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599  128 AGGLLDLVELREGDALQTLAKDLPD-----SIDLVLLDGAKALYPEVLALLESRLRPGALVIADNAEHSPEYLAHVRSPA 202
Cdd:PLN02589 126 KAGVAHKIDFREGPALPVLDQMIEDgkyhgTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPM 205

                 ....
gi 15596599  203 NGYL 206
Cdd:PLN02589 206 RKYV 209
PLN02781 PLN02781
Probable caffeoyl-CoA O-methyltransferase
21-200 2.02e-04

Probable caffeoyl-CoA O-methyltransferase


Pssm-ID: 215417  Cd Length: 234  Bit Score: 40.95  E-value: 2.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599   21 EASA-PGDSPALADLSEAELKRlmgskteyrefYGRLKDLALPVsrETGCLLYMLARSSSARSIVEFGTSFGLSTLHLAA 99
Cdd:PLN02781  22 ETSAyPREHELLKELREATVQK-----------YGNLSEMEVPV--DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTAL 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599  100 ALRDNggGRLIGSEFEPSKAERARRNLAAGGLLDLVELREGDAL----QTLAKDLPDSIDLVLLDGAKALYPEVLALLES 175
Cdd:PLN02781  89 ALPED--GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALsaldQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLK 166
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 15596599  176 RLRPGALVIADNA----------EHSPEYLAHVRS 200
Cdd:PLN02781 167 LVKVGGIIAFDNTlwfgfvaqeeDEVPEHMRAYRK 201
Trm11 COG1041
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ...
106-185 2.95e-04

tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440663 [Multi-domain]  Cd Length: 172  Bit Score: 39.93  E-value: 2.95e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599 106 GGRLIGSEFEPSKAERARRNLAAGGLLDlVELREGDalqtlAKDLP---DSIDLVLLD------------GAKALYPEVL 170
Cdd:COG1041  48 GRRVIGSDIDPKMVEGARENLEHYGYED-ADVIRGD-----ARDLPladESVDAIVTDppygrsskisgeELLELYEKAL 121
                        90
                ....*....|....*.
gi 15596599 171 ALLESRLRPGA-LVIA 185
Cdd:COG1041 122 EEAARVLKPGGrVVIV 137
COG4076 COG4076
Predicted RNA methylase [General function prediction only];
83-184 4.30e-03

Predicted RNA methylase [General function prediction only];


Pssm-ID: 443253 [Multi-domain]  Cd Length: 230  Bit Score: 36.94  E-value: 4.30e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596599  83 IVEFGTSFGLSTLhLAAAlrdNGGGRLIGSEFEPSKAERARRNLAAGGLLDLVELREGDAlQTLakDLPDSIDLV---LL 159
Cdd:COG4076  39 VLDIGTGSGLLSM-LAAR---AGAKKVYAVEVNPDIAAVARRIIAANGLSDRITVINADA-TDL--DLPEKADVIiseML 111
                        90       100
                ....*....|....*....|....*....
gi 15596599 160 DGAkALYPEVLALLES----RLRPGALVI 184
Cdd:COG4076 112 DTA-LLDEGQVPILNHarkrLLKPGGRII 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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