|
Name |
Accession |
Description |
Interval |
E-value |
| MscK |
COG3264 |
Small-conductance mechanosensitive channel MscK [Cell wall/membrane/envelope biogenesis]; |
523-794 |
3.81e-93 |
|
Small-conductance mechanosensitive channel MscK [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442495 [Multi-domain] Cd Length: 281 Bit Score: 293.26 E-value: 3.81e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 523 AQLGESSKTLGNLNIVPQDILVALLLFVGGLFALRIVKRWLSERLLPETNMDAGMRASLVTLVGYLGFVLLAMLVMSTLR 602
Cdd:COG3264 4 SALLELLFLIGGISISLPNLLLALLILVVTYLLARLLSRLLERRLLRRTRLDPGLRYLISKLIRYLIIVLGLLIALSALG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 603 INLTSLTWVVSALSVGIGFGLQAIVQNFISGLILLTERPVKVGDWVSLGGVEGDIRRINVRATEIQMGDRSTVIVPNSQF 682
Cdd:COG3264 84 IDLTALAALAGALGVGIGFGLQDIVSNFISGLILLFERPFRVGDWIEIGGTEGTVEEIGLRSTRIRTFDGEEVIIPNSEL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 683 ISQTVRNVTMGNALGVVGVNLTLPLDTDAMKVRELLLQAFAEHPAILDAPAPSVTFKDLASNGLVLNASGFVNSPRSVAG 762
Cdd:COG3264 164 ITNPVINWSLSDPRRRVEIPVGVAYGSDLEKVRELLLEAAREHPRVLKDPAPSVLFTEFGDSSVNFELRFWVNDPRDRLR 243
|
250 260 270
....*....|....*....|....*....|..
gi 15596605 763 ARSDLLFTILDRLRSEGIALSSPQSLLMIQDG 794
Cdd:COG3264 244 VRSDLNEAIKKAFREEGIEIPFPQRDVHLRNP 275
|
|
| MS_channel |
pfam00924 |
Mechanosensitive ion channel; Two members of this protein family: Swiss:Q57634 and Swiss: ... |
583-781 |
5.72e-39 |
|
Mechanosensitive ion channel; Two members of this protein family: Swiss:Q57634 and Swiss:Q58543 of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.
Pssm-ID: 459999 [Multi-domain] Cd Length: 203 Bit Score: 143.51 E-value: 5.72e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 583 TLVGYLGFVLLAMLVMSTLRINLTSLTWVVSALSVGIGFGLQAIVQNFISGLILLTERPVKVGDWVSLGGVEGDIRRINV 662
Cdd:pfam00924 2 KILKYLIIVVGILIVLSYLGVNVSALLAGLGALGLALGFALQDLVSNLVSGIIILFEKPFKIGDWIEIGDIEGTVEDIGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 663 RATEIQMGDRSTVIVPNSQFISQTVRNVTMGNAlGVVGVNLTLPLDTD---AMKVRELLLQAFAEHPAILDAPAPSVTFK 739
Cdd:pfam00924 82 RTTTIRTFDGRLVTIPNSSILTSNIINYSRSPT-RRVELSIGVAYSSDpdkLEKVIEILKEAAYEHPLVLKDPEPPVVFG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 15596605 740 DLASNGLVLNASGFVNS-PRSVAGARSDLLFTILDRLRSEGIA 781
Cdd:pfam00924 161 EFGDSSLNFELRVWVKTlPGEYFNVRSELNLRIKKALEENGIE 203
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
583-738 |
7.03e-32 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 133.88 E-value: 7.03e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 583 TLVGYLGFVLLAMLVMSTLRINLTSLTWVVSALSVGIGFGLQAIVQNFISGLILLTERPVKVGDWVSLGGVEGDIRRINV 662
Cdd:PRK11281 880 TLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAALSVGLGFGLQEIFANFVSGLIILFERPVRIGDTVTIGTFSGTVSKIRI 959
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15596605 663 RATEIQMGDRSTVIVPNSQFISQTVRNVTMGNALGVVGVNLTLPLDTDAMKVRELLLQAFAEHPAILDAPAPSVTF 738
Cdd:PRK11281 960 RATTITDFDRKEVIVPNKAFVTERLINWSLSDTVTRVVIKVGVAYGSDLEKVRELLLQAATENPRVMKEPEPQVFF 1035
|
|
| DUF3772 |
pfam12607 |
Protein of unknown function (DUF3772); This domain family is found in bacteria, and is ... |
140-201 |
6.12e-15 |
|
Protein of unknown function (DUF3772); This domain family is found in bacteria, and is approximately 60 amino acids in length. The family is found in association with pfam00924.
Pssm-ID: 432664 Cd Length: 63 Bit Score: 69.65 E-value: 6.12e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15596605 140 RQATQLGQSSRDLAAQIVNLRRSLFNSQISSRAATPFSPSFWSTLIRPTDDDLRRLDKLKAE 201
Cdd:pfam12607 2 KQARLLKVRADQLSDQISKLRRERFTSQLLERSPSPLNPAFWSPLAAPLPEDLRRLQALLAD 63
|
|
| PksD |
COG3321 |
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ... |
27-446 |
4.46e-07 |
|
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442550 [Multi-domain] Cd Length: 1386 Bit Score: 53.72 E-value: 4.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 27 AWAARPAPQAAVDLEAPAALAEDASLDQLNAQLDLIRQRVTADASDDLLAELRQSALQVQRQADALLALRVADIERLDDQ 106
Cdd:COG3321 867 PFQREDAAAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALAALLALVALAAAAAALLALA 946
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 107 LKVIGPPQPDEAESLAAQRQALTRQKNALLDDERQATQLGQSSRDLAAQIVNLRRSLfnsQISSRAATPFSPSFWSTLIR 186
Cdd:COG3321 947 AAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALA---LLAAAALLLAAAAAAAALLA 1023
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 187 PTDDDLRRLDKLKAEALVAFDSAIAPGHRWAFAGTLLATVLVWSFGRRLLERMLTWAMIRWLPEGRLRRSALALAVGLAT 266
Cdd:COG3321 1024 LAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALAAALAAAALALALAALA 1103
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 267 ILTIVGAVSLMRWGLESNASLSPDMASLTDQLVSLATFCAFIAGLGRALLMLPRPSWRLPAIPDRIASALGPFPAILAVA 346
Cdd:COG3321 1104 AALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAALLLALALALAA 1183
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 347 LMLVATEERINNVTGTSLALTVALNGLTALVTALIFAAALLRYHHVRRKHDLERPGGIAGLIPFVASVWIAAILLALFTG 426
Cdd:COG3321 1184 ALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAALAAAAAALLAALAALA 1263
|
410 420
....*....|....*....|
gi 15596605 427 YLSLAYFLTGKLLWISVIAA 446
Cdd:COG3321 1264 LLAAAAGLAALAAAAAAAAA 1283
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
40-174 |
9.40e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 9.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 40 LEAPAALAEDASLDQLNAQLDLIRQRVTADA----SDDLLAELRQSALQVQRQADALLALRVADIERLDDQLKVIGppqp 115
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTELEAEIEELEErleeAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT---- 813
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 15596605 116 DEAESLAAQRQALTRQKNALLDDERQATQLGQSSRDLAAQIVNLRRSLFNSQISSRAAT 174
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872
|
|
| MscS_porin |
pfam12795 |
Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part ... |
33-168 |
2.86e-03 |
|
Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this MscS_porin is towards the N-terminal of the molecules. The high concentration of negative charges at the extracellular entrance of the pore helps select the cations for efflux.
Pssm-ID: 432790 [Multi-domain] Cd Length: 238 Bit Score: 40.36 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 33 APQAAVDLEAPAALAEDASLDQLNAQL-----DLIRQRVTADASDDLLAELRQSALQVQRQadaLLALRVAdIERLDDQL 107
Cdd:pfam12795 61 AALQAKAEAAPKEILASLSLEELEQRLlqtsaQLQELQNQLAQLNSQLIELQTRPERAQQQ---LSEARQR-LQQIRNRL 136
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15596605 108 KviGPPQPDEAESLAAQRQALTRQknALLDDERQATQLGQSSRDLAAQIVNLRRSLFNSQI 168
Cdd:pfam12795 137 N--GPAPPGEPLSEAQRWALQAEL--AALKAQIDMLEQELLSNNNRQDLLKARRDLLTLRI 193
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| MscK |
COG3264 |
Small-conductance mechanosensitive channel MscK [Cell wall/membrane/envelope biogenesis]; |
523-794 |
3.81e-93 |
|
Small-conductance mechanosensitive channel MscK [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442495 [Multi-domain] Cd Length: 281 Bit Score: 293.26 E-value: 3.81e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 523 AQLGESSKTLGNLNIVPQDILVALLLFVGGLFALRIVKRWLSERLLPETNMDAGMRASLVTLVGYLGFVLLAMLVMSTLR 602
Cdd:COG3264 4 SALLELLFLIGGISISLPNLLLALLILVVTYLLARLLSRLLERRLLRRTRLDPGLRYLISKLIRYLIIVLGLLIALSALG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 603 INLTSLTWVVSALSVGIGFGLQAIVQNFISGLILLTERPVKVGDWVSLGGVEGDIRRINVRATEIQMGDRSTVIVPNSQF 682
Cdd:COG3264 84 IDLTALAALAGALGVGIGFGLQDIVSNFISGLILLFERPFRVGDWIEIGGTEGTVEEIGLRSTRIRTFDGEEVIIPNSEL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 683 ISQTVRNVTMGNALGVVGVNLTLPLDTDAMKVRELLLQAFAEHPAILDAPAPSVTFKDLASNGLVLNASGFVNSPRSVAG 762
Cdd:COG3264 164 ITNPVINWSLSDPRRRVEIPVGVAYGSDLEKVRELLLEAAREHPRVLKDPAPSVLFTEFGDSSVNFELRFWVNDPRDRLR 243
|
250 260 270
....*....|....*....|....*....|..
gi 15596605 763 ARSDLLFTILDRLRSEGIALSSPQSLLMIQDG 794
Cdd:COG3264 244 VRSDLNEAIKKAFREEGIEIPFPQRDVHLRNP 275
|
|
| MscS |
COG0668 |
Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis]; |
542-793 |
7.94e-48 |
|
Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440432 [Multi-domain] Cd Length: 276 Bit Score: 170.83 E-value: 7.94e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 542 ILVALLLFVGGLFALRIVKRWLSERLLPETNmDAGMRASLVTLVGYLGFVLLAMLVMSTLRINLTSLTWVVSALSVGIGF 621
Cdd:COG0668 27 LLLALLILLIGWLLIRLLRRLIRRLLRRARR-DRTLLPLLRNILKILIVIIAILLILSILGVNITSLLAGLGAAGLAIGL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 622 GLQAIVQNFISGLILLTERPVKVGDWVSLGGVEGDIRRINVRATEIQMGDRSTVIVPNSQFISQTVRNVTMGNALGVVgV 701
Cdd:COG0668 106 AAQDLLSNFIAGIFILLERPFRVGDWIEVGGVEGTVEEIGLRSTRLRTLDGRLVTIPNSKILSSPITNYSRGPTRRVD-V 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 702 NLTLPLDTDAMKVRELLLQAFAEHPAILDAPApSVTFKDLASNGLVLNASGFVNSPRSVAgARSDLLFTILDRLRSEGIA 781
Cdd:COG0668 185 TIGVDYDTDIDKARELLKEILEELPRILKDPA-VVGVTELGDSSVNLRVRAWTKPGDYWD-VRRDIRERIKAALDEAGIE 262
|
250
....*....|..
gi 15596605 782 LSSPQSLLMIQD 793
Cdd:COG0668 263 IPFPTRTVHLAE 274
|
|
| MS_channel |
pfam00924 |
Mechanosensitive ion channel; Two members of this protein family: Swiss:Q57634 and Swiss: ... |
583-781 |
5.72e-39 |
|
Mechanosensitive ion channel; Two members of this protein family: Swiss:Q57634 and Swiss:Q58543 of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.
Pssm-ID: 459999 [Multi-domain] Cd Length: 203 Bit Score: 143.51 E-value: 5.72e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 583 TLVGYLGFVLLAMLVMSTLRINLTSLTWVVSALSVGIGFGLQAIVQNFISGLILLTERPVKVGDWVSLGGVEGDIRRINV 662
Cdd:pfam00924 2 KILKYLIIVVGILIVLSYLGVNVSALLAGLGALGLALGFALQDLVSNLVSGIIILFEKPFKIGDWIEIGDIEGTVEDIGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 663 RATEIQMGDRSTVIVPNSQFISQTVRNVTMGNAlGVVGVNLTLPLDTD---AMKVRELLLQAFAEHPAILDAPAPSVTFK 739
Cdd:pfam00924 82 RTTTIRTFDGRLVTIPNSSILTSNIINYSRSPT-RRVELSIGVAYSSDpdkLEKVIEILKEAAYEHPLVLKDPEPPVVFG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 15596605 740 DLASNGLVLNASGFVNS-PRSVAGARSDLLFTILDRLRSEGIA 781
Cdd:pfam00924 161 EFGDSSLNFELRVWVKTlPGEYFNVRSELNLRIKKALEENGIE 203
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
583-738 |
7.03e-32 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 133.88 E-value: 7.03e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 583 TLVGYLGFVLLAMLVMSTLRINLTSLTWVVSALSVGIGFGLQAIVQNFISGLILLTERPVKVGDWVSLGGVEGDIRRINV 662
Cdd:PRK11281 880 TLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAALSVGLGFGLQEIFANFVSGLIILFERPVRIGDTVTIGTFSGTVSKIRI 959
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15596605 663 RATEIQMGDRSTVIVPNSQFISQTVRNVTMGNALGVVGVNLTLPLDTDAMKVRELLLQAFAEHPAILDAPAPSVTF 738
Cdd:PRK11281 960 RATTITDFDRKEVIVPNKAFVTERLINWSLSDTVTRVVIKVGVAYGSDLEKVRELLLQAATENPRVMKEPEPQVFF 1035
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
542-741 |
3.04e-29 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 125.55 E-value: 3.04e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 542 ILVALLLFVGGLFALRIVKRWLSERLLPETNMDAGMRASLVTLVGYLGFVLLAMLVMSTLRINLTSLTWVVSALSVGIGF 621
Cdd:PRK10929 836 VLIAILVFIITTQLVRNLPALLELALLQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGF 915
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 622 GLQAIVQNFISGLILLTERPVKVGDWVSLGGVEGDIRRINVRATEIQMGDRSTVIVPNSQFISQTVRNVTMGNALGVVGV 701
Cdd:PRK10929 916 GLQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDSVTRVVL 995
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 15596605 702 NLTLPLDTDAMKVRELLLQAFAEHPAILDAPAPSVTFKDL 741
Cdd:PRK10929 996 TIPAPADANSEEVTEILLTAARRCSLVLDNPAPEVFLVDL 1035
|
|
| PRK10334 |
PRK10334 |
small-conductance mechanosensitive channel MscS; |
541-786 |
3.08e-15 |
|
small-conductance mechanosensitive channel MscS;
Pssm-ID: 182386 [Multi-domain] Cd Length: 286 Bit Score: 76.88 E-value: 3.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 541 DILVALLLFVGGLFALRIVKRWLSeRLLPETNMDAGMRASLVTLVGY--LGFVLLAMLvmSTLRINLTSLTWVVSALSVG 618
Cdd:PRK10334 30 NIVAALAIIIVGLIIARMISNAVN-RLMISRKIDATVADFLSALVRYgiIAFTLIAAL--GRVGVQTASVIAVLGAAGLA 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 619 IGFGLQAIVQNFISGLILLTERPVKVGDWVSLGGVEGDIRRINVRATEIQMGDRSTVIVPNSQFISQTVRNVTMGNALG- 697
Cdd:PRK10334 107 VGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRn 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 698 --VVGVNltlpLDTDAMKVRELLLQAFAEHPAILDAPAPSVTFKDLASNGLvlnasGFVNSPRSVAGARSDLLFTILDRL 775
Cdd:PRK10334 187 efIIGVA----YDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSI-----NFVVRVWSNSGDLQNVYWDVLERI 257
|
250
....*....|....*
gi 15596605 776 RSE----GIALSSPQ 786
Cdd:PRK10334 258 KREfdaaGISFPYPQ 272
|
|
| DUF3772 |
pfam12607 |
Protein of unknown function (DUF3772); This domain family is found in bacteria, and is ... |
140-201 |
6.12e-15 |
|
Protein of unknown function (DUF3772); This domain family is found in bacteria, and is approximately 60 amino acids in length. The family is found in association with pfam00924.
Pssm-ID: 432664 Cd Length: 63 Bit Score: 69.65 E-value: 6.12e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15596605 140 RQATQLGQSSRDLAAQIVNLRRSLFNSQISSRAATPFSPSFWSTLIRPTDDDLRRLDKLKAE 201
Cdd:pfam12607 2 KQARLLKVRADQLSDQISKLRRERFTSQLLERSPSPLNPAFWSPLAAPLPEDLRRLQALLAD 63
|
|
| PksD |
COG3321 |
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ... |
27-446 |
4.46e-07 |
|
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442550 [Multi-domain] Cd Length: 1386 Bit Score: 53.72 E-value: 4.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 27 AWAARPAPQAAVDLEAPAALAEDASLDQLNAQLDLIRQRVTADASDDLLAELRQSALQVQRQADALLALRVADIERLDDQ 106
Cdd:COG3321 867 PFQREDAAAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALAALLALVALAAAAAALLALA 946
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 107 LKVIGPPQPDEAESLAAQRQALTRQKNALLDDERQATQLGQSSRDLAAQIVNLRRSLfnsQISSRAATPFSPSFWSTLIR 186
Cdd:COG3321 947 AAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALA---LLAAAALLLAAAAAAAALLA 1023
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 187 PTDDDLRRLDKLKAEALVAFDSAIAPGHRWAFAGTLLATVLVWSFGRRLLERMLTWAMIRWLPEGRLRRSALALAVGLAT 266
Cdd:COG3321 1024 LAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALAAALAAAALALALAALA 1103
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 267 ILTIVGAVSLMRWGLESNASLSPDMASLTDQLVSLATFCAFIAGLGRALLMLPRPSWRLPAIPDRIASALGPFPAILAVA 346
Cdd:COG3321 1104 AALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAALLLALALALAA 1183
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 347 LMLVATEERINNVTGTSLALTVALNGLTALVTALIFAAALLRYHHVRRKHDLERPGGIAGLIPFVASVWIAAILLALFTG 426
Cdd:COG3321 1184 ALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAALAAAAAALLAALAALA 1263
|
410 420
....*....|....*....|
gi 15596605 427 YLSLAYFLTGKLLWISVIAA 446
Cdd:COG3321 1264 LLAAAAGLAALAAAAAAAAA 1283
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
26-161 |
1.76e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 1.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 26 EAWAArpapQAAVDLEAPAALAEDASLDQLNAQLDLIRQRVTA--DASDDLLAELRQS------ALQVQ-RQADALLALR 96
Cdd:COG4913 282 RLWFA----QRRLELLEAELEELRAELARLEAELERLEARLDAlrEELDELEAQIRGNggdrleQLEREiERLERELEER 357
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15596605 97 VADIERLDDQLKVIGPPQPDEAESLAAQRQALTRQKNALLDDER----QATQLGQSSRDLAAQIVNLRR 161
Cdd:COG4913 358 ERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEaleeALAEAEAALRDLRRELRELEA 426
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
39-206 |
4.04e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 4.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 39 DLEAPAALAEdasLDQLNAQLDLIrqrvtaDASDDLLAELRQSALQVQRQADAL-------------LALRVADIERLDD 105
Cdd:COG4913 660 EIDVASAERE---IAELEAELERL------DASSDDLAALEEQLEELEAELEELeeeldelkgeigrLEKELEQAEEELD 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 106 QLKvigpPQPDEAESLA--AQRQALTRQKNALLDDERQAT---QLGQSSRDLAAQIVNLRRSLFNSQISSRAATPFSPSF 180
Cdd:COG4913 731 ELQ----DRLEAAEDLArlELRALLEERFAAALGDAVERElreNLEERIDALRARLNRAEEELERAMRAFNREWPAETAD 806
|
170 180
....*....|....*....|....*.
gi 15596605 181 WSTLIRPTDDDLRRLDKLKAEALVAF 206
Cdd:COG4913 807 LDADLESLPEYLALLDRLEEDGLPEY 832
|
|
| PRK11465 |
PRK11465 |
putative mechanosensitive channel protein; Provisional |
595-724 |
7.28e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 183147 [Multi-domain] Cd Length: 741 Bit Score: 49.78 E-value: 7.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 595 MLVMSTLRINLTSLTWVVSALSVGIGFGLQAIVQNFISGLILLTERPVKVGDWVSLGGVEGDIRRINVRATEIQMGDRST 674
Cdd:PRK11465 527 MIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAY 606
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 15596605 675 VIVPNSQFisQTVRNVTMGnaLGVVGVNLTLPLDTDAMKVRELLLQAFAE 724
Cdd:PRK11465 607 HIIPWSSI--TTFANFVRG--IGSVVANYDVDRHEDADKANQALKDAVAE 652
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
40-174 |
9.40e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 9.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 40 LEAPAALAEDASLDQLNAQLDLIRQRVTADA----SDDLLAELRQSALQVQRQADALLALRVADIERLDDQLKVIGppqp 115
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTELEAEIEELEErleeAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT---- 813
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 15596605 116 DEAESLAAQRQALTRQKNALLDDERQATQLGQSSRDLAAQIVNLRRSLFNSQISSRAAT 174
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
35-265 |
1.23e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 35 QAAVDLEAPAALAEDASLDQLNAQLDLIRQRVTADASDDLLAELRQSALQVQRQADALLALRVADIERLDDQLKVIGPPQ 114
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 115 PDEAESLAAQRQALTRQKNALLDDERQ-----ATQLGQSSRDLAAQIVNLRRSLFNSQISSRAATP-----FSPSFWSTL 184
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLAGAVAVLIGveaayEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKagratFLPLDKIRA 584
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 185 IRPTDDDLRRLDKLKAEALVAFDSAIAPGHRWAFAGTLLATVLVwsfgrrlLERMLTWAMIRWLPEGRLRRSALALAVGL 264
Cdd:COG1196 585 RAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV-------AARLEAALRRAVTLAGRLREVTLEGEGGS 657
|
.
gi 15596605 265 A 265
Cdd:COG1196 658 A 658
|
|
| MscS_porin |
pfam12795 |
Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part ... |
33-168 |
2.86e-03 |
|
Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this MscS_porin is towards the N-terminal of the molecules. The high concentration of negative charges at the extracellular entrance of the pore helps select the cations for efflux.
Pssm-ID: 432790 [Multi-domain] Cd Length: 238 Bit Score: 40.36 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 33 APQAAVDLEAPAALAEDASLDQLNAQL-----DLIRQRVTADASDDLLAELRQSALQVQRQadaLLALRVAdIERLDDQL 107
Cdd:pfam12795 61 AALQAKAEAAPKEILASLSLEELEQRLlqtsaQLQELQNQLAQLNSQLIELQTRPERAQQQ---LSEARQR-LQQIRNRL 136
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15596605 108 KviGPPQPDEAESLAAQRQALTRQknALLDDERQATQLGQSSRDLAAQIVNLRRSLFNSQI 168
Cdd:pfam12795 137 N--GPAPPGEPLSEAQRWALQAEL--AALKAQIDMLEQELLSNNNRQDLLKARRDLLTLRI 193
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
52-172 |
7.02e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.50 E-value: 7.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596605 52 LDQLNAQLDLIRQRVTA------DASDDLLA---ELRQSALQVQRQADALLALRvADIERLDDQLKVIGppqpDEAESLA 122
Cdd:COG4372 47 LEQLREELEQAREELEQleeeleQARSELEQleeELEELNEQLQAAQAELAQAQ-EELESLQEEAEELQ----EELEELQ 121
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 15596605 123 AQRQALTRQKNAlLDDERQATQLGQSSRD-----LAAQIVNLRRSLFNSQISSRA 172
Cdd:COG4372 122 KERQDLEQQRKQ-LEAQIAELQSEIAEREeelkeLEEQLESLQEELAALEQELQA 175
|
|
| |
