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Conserved domains on  [gi|15596836|ref|NP_250330|]
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hypothetical protein PA1639 [Pseudomonas aeruginosa PAO1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4893 super family cl24717
Domain of unknown function (DUF4893); This family consists of uncharacterized proteins around ...
 74-198 4.77e-18

Domain of unknown function (DUF4893); This family consists of uncharacterized proteins around 200 residues in length and is mainly found in various Pseudomonas species. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam16233:

Pssm-ID: 406607  Cd Length: 171  Bit Score: 77.43  E-value: 4.77e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596836    74 SLAQPVVAVDEKGLL-GDWKCRST----QADQYGIYR-YPNFQCRIRRTDRGLFLEKTSGSQRVSGYLFREGTQRYVFLG 147
Cdd:pfam16233  41 ALLEPDAALPDPAPPaGDYRCRTIklggQGRRGLGYVaYPWFRCRVTDDGGGLFLEKLTGSQRPSGLLFPDGDRRMVFLG 120

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 15596836   148 GATVNDEPQVafsgLAHGAPAESDVVALL-RPHAGGFLLLFPERRG--GYEVLE 198
Cdd:pfam16233 121 AMALGDEGAP----LAYGEDPERDMVGVVeRIGPFRWRLVLPWPRLesTLDVLE 170
 
Name Accession Description Interval E-value
DUF4893 pfam16233
Domain of unknown function (DUF4893); This family consists of uncharacterized proteins around ...
 74-198 4.77e-18

Domain of unknown function (DUF4893); This family consists of uncharacterized proteins around 200 residues in length and is mainly found in various Pseudomonas species. The function of this family is unknown.


Pssm-ID: 406607  Cd Length: 171  Bit Score: 77.43  E-value: 4.77e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596836    74 SLAQPVVAVDEKGLL-GDWKCRST----QADQYGIYR-YPNFQCRIRRTDRGLFLEKTSGSQRVSGYLFREGTQRYVFLG 147
Cdd:pfam16233  41 ALLEPDAALPDPAPPaGDYRCRTIklggQGRRGLGYVaYPWFRCRVTDDGGGLFLEKLTGSQRPSGLLFPDGDRRMVFLG 120

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 15596836   148 GATVNDEPQVafsgLAHGAPAESDVVALL-RPHAGGFLLLFPERRG--GYEVLE 198
Cdd:pfam16233 121 AMALGDEGAP----LAYGEDPERDMVGVVeRIGPFRWRLVLPWPRLesTLDVLE 170
 
Name Accession Description Interval E-value
DUF4893 pfam16233
Domain of unknown function (DUF4893); This family consists of uncharacterized proteins around ...
 74-198 4.77e-18

Domain of unknown function (DUF4893); This family consists of uncharacterized proteins around 200 residues in length and is mainly found in various Pseudomonas species. The function of this family is unknown.


Pssm-ID: 406607  Cd Length: 171  Bit Score: 77.43  E-value: 4.77e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596836    74 SLAQPVVAVDEKGLL-GDWKCRST----QADQYGIYR-YPNFQCRIRRTDRGLFLEKTSGSQRVSGYLFREGTQRYVFLG 147
Cdd:pfam16233  41 ALLEPDAALPDPAPPaGDYRCRTIklggQGRRGLGYVaYPWFRCRVTDDGGGLFLEKLTGSQRPSGLLFPDGDRRMVFLG 120

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 15596836   148 GATVNDEPQVafsgLAHGAPAESDVVALL-RPHAGGFLLLFPERRG--GYEVLE 198
Cdd:pfam16233 121 AMALGDEGAP----LAYGEDPERDMVGVVeRIGPFRWRLVLPWPRLesTLDVLE 170
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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