|
Name |
Accession |
Description |
Interval |
E-value |
| PRK00811 |
PRK00811 |
polyamine aminopropyltransferase; |
4-281 |
9.15e-176 |
|
polyamine aminopropyltransferase;
Pssm-ID: 234843 [Multi-domain] Cd Length: 283 Bit Score: 486.20 E-value: 9.15e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 4 YQETLYQGYGQRFSIDNMLHEVRTEHQHLVIFENARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGG 83
Cdd:PRK00811 6 FTETLTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVLIIGG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 84 GDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPNHSQGAFDDPRLNLVIDDGMRFVATTEERFDVIISDSTDPIGPG 163
Cdd:PRK00811 86 GDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 164 EVLFSENFYQACRRCLNEGGILVTQNGTPFMQLEEVRTTAARTDGLFADWHFYQAAVPTYIGGAMTFAWGSTHEGLRRLP 243
Cdd:PRK00811 166 EGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFASKNDDLKFLP 245
|
250 260 270
....*....|....*....|....*....|....*...
gi 15596884 244 LETLRQRFRDSGIATRYYNADIHLGAFALPQYVLQAIG 281
Cdd:PRK00811 246 LDVIEARFAERGIKTRYYNPELHKAAFALPQFVKDALK 283
|
|
| speE |
TIGR00417 |
spermidine synthase; the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine ... |
4-275 |
1.70e-130 |
|
spermidine synthase; the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. [Central intermediary metabolism, Polyamine biosynthesis]
Pssm-ID: 188048 [Multi-domain] Cd Length: 271 Bit Score: 370.99 E-value: 1.70e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 4 YQETLYQGYGQRFSIDNMLHEVRTEHQHLVIFENARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGG 83
Cdd:TIGR00417 2 FTEYHDKNFGLTMKVDKVLYHEKSEFQDLEIFETEAFGNVLVLDGVVQTTERDEFIYHEMITHVPLFTHPNPKHVLVIGG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 84 GDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPNHSqGAFDDPRLNLVIDDGMRFVATTEERFDVIISDSTDPIGPG 163
Cdd:TIGR00417 82 GDGGVLREVLKHKSVESATLVDIDEKVIELSRKYLPNLA-GSYDDPRVKLVIDDGFKFLADTENTFDVIIVDSTDPVGPA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 164 EVLFSENFYQACRRCLNEGGILVTQNGTPFMQLEEVRTTAARTDGLFADWHFYQAAVPTYIGGAMTFAWGSTHEgLRRLP 243
Cdd:TIGR00417 161 ETLFTKEFYELLKKALNPDGIFVAQSESPWLQLELIIDLKRKLKEAFPITEYYTAAIPTYPSGLWTFTIASKNK-YRPLE 239
|
250 260 270
....*....|....*....|....*....|..
gi 15596884 244 LETLRQRFRDSGIATRYYNADIHLGAFALPQY 275
Cdd:TIGR00417 240 VEIRRIKFEAEDGKTKYYNPDIHKAAFVLPKW 271
|
|
| SpeE |
COG0421 |
Spermidine synthase (polyamine aminopropyltransferase) [Amino acid transport and metabolism]; |
41-233 |
6.71e-92 |
|
Spermidine synthase (polyamine aminopropyltransferase) [Amino acid transport and metabolism];
Pssm-ID: 440190 [Multi-domain] Cd Length: 195 Bit Score: 270.16 E-value: 6.71e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 41 GRVMALDGVIQTT-EADEFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLP 119
Cdd:COG0421 3 GRVLVLDGVVQSTmELDEFEYHEMMAHVPLLFHPNPKRVLIIGGGDGGLARELLKHPPVERVDVVEIDPEVVELAREYFP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 120 NHSqGAFDDPRLNLVIDDGMRFVATTEERFDVIISDSTDPIGPGEVLFSENFYQACRRCLNEGGILVTQNGTPFMQLEEV 199
Cdd:COG0421 83 LLA-PAFDDPRLRVVIGDGRAFLREAEESYDVIIVDLTDPVGPAEGLFTREFYEDCRRALKPGGVLVVNLGSPFYGLDLL 161
|
170 180 190
....*....|....*....|....*....|....
gi 15596884 200 RTTAARTDGLFADWHFYQAAVPTYiGGAMTFAWG 233
Cdd:COG0421 162 RRVLATLREVFPHVVLYAAPVPTY-GGGNVFLLA 194
|
|
| Spermine_synth |
pfam01564 |
Spermine/spermidine synthase domain; Spermine and spermidine are polyamines. This family ... |
57-236 |
3.16e-80 |
|
Spermine/spermidine synthase domain; Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyzes the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Pssm-ID: 396237 [Multi-domain] Cd Length: 183 Bit Score: 240.30 E-value: 3.16e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 57 EFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPNHSqGAFDDPRLNLVID 136
Cdd:pfam01564 1 EFIYHEMIAHVPLCSHPNPKKVLIIGGGDGGVLREVVKHPSVEKITLVDIDEKVIDFSKKFLPSLA-IGFQDPRVKVVIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 137 DGMRFVATTEERFDVIISDSTDPIGPGEVLFSENFYQACRRCLNEGGILVTQNGTPFMQLEEVRTTAARTDGLFADWHFY 216
Cdd:pfam01564 80 DGFKFLKDYLNTFDVIIVDSTDPVGPAENLFSKPFFDLLKKALKEDGVFITQAESPWLHLELIINILKNGKQVFPVVMPY 159
|
170 180
....*....|....*....|
gi 15596884 217 QAAVPTYIGGAMTFAWGSTH 236
Cdd:pfam01564 160 VATIPTYPSGGWGFTVCSKN 179
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
77-188 |
7.98e-10 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 55.13 E-value: 7.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 77 RVLIIGGGDGGMLREVAKHKsVERITMVEIDGTVVDMCKEFlpnhsQGAFDDPRLNLVIDDGMRFVATTEERFDVIISDS 156
Cdd:cd02440 1 RVLDLGCGTGALALALASGP-GARVTGVDISPVALELARKA-----AAALLADNVEVLKGDAEELPPEADESFDVIISDP 74
|
90 100 110
....*....|....*....|....*....|..
gi 15596884 157 TDPIGPGEVlfsENFYQACRRCLNEGGILVTQ 188
Cdd:cd02440 75 PLHHLVEDL---ARFLEEARRLLKPGGVLVLT 103
|
|
| MFS_SpdSyn |
NF037959 |
fused MFS/spermidine synthase; Proteins of this family are fusion of a N-terminal MFS (Major ... |
42-184 |
3.37e-05 |
|
fused MFS/spermidine synthase; Proteins of this family are fusion of a N-terminal MFS (Major Facilitator Superfamily) transporter domain and a C-terminal spermidine synthase (SpdSyn)-like domain. The encoding genes usually near the genes encoding S-adenosylmethionine decarboxylase (AdoMetDC) on many bacterial genomes. It has been shown in Shewanella oneidensis that the fused protein aminopropylates a substrate other than putrescine, and has a role outside of polyamine biosynthesis.
Pssm-ID: 468290 [Multi-domain] Cd Length: 480 Bit Score: 44.83 E-value: 3.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 42 RVMALDGVIQTTEADE-----FI-YHEMLTHVPILAHGAAR-RVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMC 114
Cdd:NF037959 236 RLMVLDHLAHGINARDdptvlFTpYAAMLDELARLRMGRADfSAFFIGGGAYTLPRAWAARRPAGRITVAEIDPAVTRVA 315
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15596884 115 KEFLpnhsqgAFDDPRLNLVIDDGMRFVAT-TEERFDVIISDS-TDpIGPGEVLFSENFYQACRRCLNEGGI 184
Cdd:NF037959 316 AEDF------WFDPASATVLHEDARRALRRrPEERFDVIVGDAfTD-IAVPAHLVTREFFELVRARLTPDGV 380
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK00811 |
PRK00811 |
polyamine aminopropyltransferase; |
4-281 |
9.15e-176 |
|
polyamine aminopropyltransferase;
Pssm-ID: 234843 [Multi-domain] Cd Length: 283 Bit Score: 486.20 E-value: 9.15e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 4 YQETLYQGYGQRFSIDNMLHEVRTEHQHLVIFENARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGG 83
Cdd:PRK00811 6 FTETLTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVLIIGG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 84 GDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPNHSQGAFDDPRLNLVIDDGMRFVATTEERFDVIISDSTDPIGPG 163
Cdd:PRK00811 86 GDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 164 EVLFSENFYQACRRCLNEGGILVTQNGTPFMQLEEVRTTAARTDGLFADWHFYQAAVPTYIGGAMTFAWGSTHEGLRRLP 243
Cdd:PRK00811 166 EGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFASKNDDLKFLP 245
|
250 260 270
....*....|....*....|....*....|....*...
gi 15596884 244 LETLRQRFRDSGIATRYYNADIHLGAFALPQYVLQAIG 281
Cdd:PRK00811 246 LDVIEARFAERGIKTRYYNPELHKAAFALPQFVKDALK 283
|
|
| speE |
TIGR00417 |
spermidine synthase; the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine ... |
4-275 |
1.70e-130 |
|
spermidine synthase; the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. [Central intermediary metabolism, Polyamine biosynthesis]
Pssm-ID: 188048 [Multi-domain] Cd Length: 271 Bit Score: 370.99 E-value: 1.70e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 4 YQETLYQGYGQRFSIDNMLHEVRTEHQHLVIFENARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGG 83
Cdd:TIGR00417 2 FTEYHDKNFGLTMKVDKVLYHEKSEFQDLEIFETEAFGNVLVLDGVVQTTERDEFIYHEMITHVPLFTHPNPKHVLVIGG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 84 GDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPNHSqGAFDDPRLNLVIDDGMRFVATTEERFDVIISDSTDPIGPG 163
Cdd:TIGR00417 82 GDGGVLREVLKHKSVESATLVDIDEKVIELSRKYLPNLA-GSYDDPRVKLVIDDGFKFLADTENTFDVIIVDSTDPVGPA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 164 EVLFSENFYQACRRCLNEGGILVTQNGTPFMQLEEVRTTAARTDGLFADWHFYQAAVPTYIGGAMTFAWGSTHEgLRRLP 243
Cdd:TIGR00417 161 ETLFTKEFYELLKKALNPDGIFVAQSESPWLQLELIIDLKRKLKEAFPITEYYTAAIPTYPSGLWTFTIASKNK-YRPLE 239
|
250 260 270
....*....|....*....|....*....|..
gi 15596884 244 LETLRQRFRDSGIATRYYNADIHLGAFALPQY 275
Cdd:TIGR00417 240 VEIRRIKFEAEDGKTKYYNPDIHKAAFVLPKW 271
|
|
| SpeE |
COG0421 |
Spermidine synthase (polyamine aminopropyltransferase) [Amino acid transport and metabolism]; |
41-233 |
6.71e-92 |
|
Spermidine synthase (polyamine aminopropyltransferase) [Amino acid transport and metabolism];
Pssm-ID: 440190 [Multi-domain] Cd Length: 195 Bit Score: 270.16 E-value: 6.71e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 41 GRVMALDGVIQTT-EADEFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLP 119
Cdd:COG0421 3 GRVLVLDGVVQSTmELDEFEYHEMMAHVPLLFHPNPKRVLIIGGGDGGLARELLKHPPVERVDVVEIDPEVVELAREYFP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 120 NHSqGAFDDPRLNLVIDDGMRFVATTEERFDVIISDSTDPIGPGEVLFSENFYQACRRCLNEGGILVTQNGTPFMQLEEV 199
Cdd:COG0421 83 LLA-PAFDDPRLRVVIGDGRAFLREAEESYDVIIVDLTDPVGPAEGLFTREFYEDCRRALKPGGVLVVNLGSPFYGLDLL 161
|
170 180 190
....*....|....*....|....*....|....
gi 15596884 200 RTTAARTDGLFADWHFYQAAVPTYiGGAMTFAWG 233
Cdd:COG0421 162 RRVLATLREVFPHVVLYAAPVPTY-GGGNVFLLA 194
|
|
| PLN02366 |
PLN02366 |
spermidine synthase |
13-281 |
1.03e-84 |
|
spermidine synthase
Pssm-ID: 215208 [Multi-domain] Cd Length: 308 Bit Score: 256.11 E-value: 1.03e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 13 GQRFS--IDNMLHEVRTEHQHLVIFENARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLR 90
Cdd:PLN02366 28 GEAHSlkVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLR 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 91 EVAKHKSVERITMVEIDGTVVDMCKEFLPNHSQGaFDDPRLNLVIDDGMRFV-ATTEERFDVIISDSTDPIGPGEVLFSE 169
Cdd:PLN02366 108 EIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG-FDDPRVNLHIGDGVEFLkNAPEGTYDAIIVDSSDPVGPAQELFEK 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 170 NFYQACRRCLNEGGILVTQNGTPFMQLEEVRTTAARTDGLFADW-HFYQAAVPTYIGGAMTFAWGSThEGLRRLPLETLR 248
Cdd:PLN02366 187 PFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSvNYAWTTVPTYPSGVIGFVLCSK-EGPAVDFKHPVN 265
|
250 260 270
....*....|....*....|....*....|....*...
gi 15596884 249 QRFRDSGIAT-----RYYNADIHLGAFALPQYVLQAIG 281
Cdd:PLN02366 266 PIDKLEGAGKakrplKFYNSEVHRAAFCLPSFAKRELE 303
|
|
| Spermine_synth |
pfam01564 |
Spermine/spermidine synthase domain; Spermine and spermidine are polyamines. This family ... |
57-236 |
3.16e-80 |
|
Spermine/spermidine synthase domain; Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyzes the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Pssm-ID: 396237 [Multi-domain] Cd Length: 183 Bit Score: 240.30 E-value: 3.16e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 57 EFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPNHSqGAFDDPRLNLVID 136
Cdd:pfam01564 1 EFIYHEMIAHVPLCSHPNPKKVLIIGGGDGGVLREVVKHPSVEKITLVDIDEKVIDFSKKFLPSLA-IGFQDPRVKVVIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 137 DGMRFVATTEERFDVIISDSTDPIGPGEVLFSENFYQACRRCLNEGGILVTQNGTPFMQLEEVRTTAARTDGLFADWHFY 216
Cdd:pfam01564 80 DGFKFLKDYLNTFDVIIVDSTDPVGPAENLFSKPFFDLLKKALKEDGVFITQAESPWLHLELIINILKNGKQVFPVVMPY 159
|
170 180
....*....|....*....|
gi 15596884 217 QAAVPTYIGGAMTFAWGSTH 236
Cdd:pfam01564 160 VATIPTYPSGGWGFTVCSKN 179
|
|
| PLN02823 |
PLN02823 |
spermine synthase |
4-280 |
3.42e-66 |
|
spermine synthase
Pssm-ID: 178418 [Multi-domain] Cd Length: 336 Bit Score: 209.92 E-value: 3.42e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 4 YQETLYQGYGQRFSIDNMLHEVRTEHQHLVIFENARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGG 83
Cdd:PLN02823 33 YEEEIEDDLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKTVFIMGG 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 84 GDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPNHSQgAFDDPRLNLVIDDGMRFVATTEERFDVIISDSTDPI--G 161
Cdd:PLN02823 113 GEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNRE-AFCDKRLELIINDARAELEKRDEKFDVIIGDLADPVegG 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 162 PGEVLFSENFYQ-ACRRCLNEGGILVTQNGTP-FMQLEEVRTTAARTDG-LFADWHFYQAAVPTYiggAMTFAW----GS 234
Cdd:PLN02823 192 PCYQLYTKSFYErIVKPKLNPGGIFVTQAGPAgILTHKEVFSSIYNTLRqVFKYVVPYTAHVPSF---ADTWGWvmasDH 268
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 15596884 235 THEGLRRLPL-ETLRQRFRDSgiaTRYYNADIHLGAFALPQYVLQAI 280
Cdd:PLN02823 269 PFADLSAEELdSRIKERIDGE---LKYLDGETFSSAFALNKTVRQAL 312
|
|
| COG4262 |
COG4262 |
Predicted spermidine synthase with an N-terminal membrane domain [General function prediction ... |
14-204 |
7.39e-58 |
|
Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only];
Pssm-ID: 443404 [Multi-domain] Cd Length: 426 Bit Score: 190.85 E-value: 7.39e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 14 QRFSIDNMLHEVRTEHQHLVIFENARmGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLREVA 93
Cdd:COG4262 227 QKLYGDPVVYSEQTPYQRIVVTRDKD-DRRLYLNGNLQFSSLDEYRYHEALVHPPMAAHPRPRRVLVLGGGDGLAAREVL 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 94 KHKSVERITMVEIDGTVVDMCKE--FLPNHSQGAFDDPRLNLVIDDGMRFVATTEERFDVIISDSTDPIGPGEV-LFSEN 170
Cdd:COG4262 306 KYPDVESVTLVDLDPEVTDLAKTnpFLRELNGGALNDPRVTVVNADAFQFLRETDEKYDVIIVDLPDPSNFSLGkLYSVE 385
|
170 180 190
....*....|....*....|....*....|....
gi 15596884 171 FYQACRRCLNEGGILVTQNGTPFMQLEEVRTTAA 204
Cdd:COG4262 386 FYRLVRRHLAPGGVLVVQATSPYFAPKAFWCIAK 419
|
|
| PRK03612 |
PRK03612 |
polyamine aminopropyltransferase; |
14-273 |
4.77e-46 |
|
polyamine aminopropyltransferase;
Pssm-ID: 235139 [Multi-domain] Cd Length: 521 Bit Score: 161.93 E-value: 4.77e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 14 QRFSIDNMLHEVRTEHQHLVIFENAR-MGRVMAL--DGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLR 90
Cdd:PRK03612 234 QLLYGDPVVYAEQTPYQRIVVTRRGNgRGPDLRLylNGRLQFSSRDEYRYHEALVHPAMAASARPRRVLVLGGGDGLALR 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 91 EVAKHKSVERITMVEIDGTVVDMCKEFLP----NhsQGAFDDPRLNLVIDDGMRFVATTEERFDVIISDSTDPIGPGEV- 165
Cdd:PRK03612 314 EVLKYPDVEQVTLVDLDPAMTELARTSPAlralN--GGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGk 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 166 LFSENFYQACRRCLNEGGILVTQNGTPFMQLEE----VRTTAArtdglfADWHF--YQAAVPtyiggamTFA-WGSTheg 238
Cdd:PRK03612 392 LYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAfwsiEATLEA------AGLATtpYHVNVP-------SFGeWGFV--- 455
|
250 260 270
....*....|....*....|....*....|....*
gi 15596884 239 LRRLPLETLRQRFRDSGIATRYYNADIHLGAFALP 273
Cdd:PRK03612 456 LAGAGARPPLAVPTELPVPLRFLDPALLAAAFVFP 490
|
|
| speE |
PRK01581 |
polyamine aminopropyltransferase; |
19-192 |
9.57e-28 |
|
polyamine aminopropyltransferase;
Pssm-ID: 234961 [Multi-domain] Cd Length: 374 Bit Score: 110.05 E-value: 9.57e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 19 DNMLHE-VRTEHQHLVIFENARMgrvmALDGVIQTTEADEFIYHEMLTHvPILAHGA-ARRVLIIGGGDGGMLREVAKHK 96
Cdd:PRK01581 98 TNLFAEkSNYQNINLLQVSDIRL----YLDKQLQFSSVDEQIYHEALVH-PIMSKVIdPKRVLILGGGDGLALREVLKYE 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 97 SVERITMVEIDGTVVDMCK--EFLPNHSQGAFDDPRLNLVIDDGMRFVATTEERFDVIISDSTDPIGPG-EVLFSENFYQ 173
Cdd:PRK01581 173 TVLHVDLVDLDGSMINMARnvPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELlSTLYTSELFA 252
|
170
....*....|....*....
gi 15596884 174 ACRRCLNEGGILVTQNGTP 192
Cdd:PRK01581 253 RIATFLTEDGAFVCQSNSP 271
|
|
| speE |
PRK00536 |
spermidine synthase; Provisional |
14-285 |
4.43e-17 |
|
spermidine synthase; Provisional
Pssm-ID: 134311 [Multi-domain] Cd Length: 262 Bit Score: 78.75 E-value: 4.43e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 14 QRFSIDNMLHEVRTEHQHLVIFENARMGRVMALDGVIqTTEADEFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLREVA 93
Cdd:PRK00536 13 KEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNKQL-LFKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 94 KHKSveRITMVEIDGTVVDMCKEFLPnHSQGAFDDPRLNLViddgMRFVATTEERFDVIISDStdpigpgevLFSENFYQ 173
Cdd:PRK00536 92 KYDT--HVDFVQADEKILDSFISFFP-HFHEVKNNKNFTHA----KQLLDLDIKKYDLIICLQ---------EPDIHKID 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 174 ACRRCLNEGGILVTQNGTPFMQlEEVRTTAARTDGlfadwHFYQAAVPTY----IGGAMTFAWGSthegLRRLPLETLRQ 249
Cdd:PRK00536 156 GLKRMLKEDGVFISVAKHPLLE-HVSMQNALKNMG-----DFFSIAMPFVaplrILSNKGYIYAS----FKTHPLKDLML 225
|
250 260 270
....*....|....*....|....*....|....*.
gi 15596884 250 RFRDSGIATRYYNADIHLGAFALPQYVLQAIgkQDN 285
Cdd:PRK00536 226 QKIEALKSVRYYNEDIHRAAFALPKNLQEVF--KDN 259
|
|
| PRK04457 |
PRK04457 |
polyamine aminopropyltransferase; |
76-187 |
6.87e-14 |
|
polyamine aminopropyltransferase;
Pssm-ID: 179854 [Multi-domain] Cd Length: 262 Bit Score: 69.68 E-value: 6.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 76 RRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKeflpNHSQGAFDDPRLNLVIDDGMRFVATTEERFDVIISD 155
Cdd:PRK04457 68 QHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVAR----NHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143
|
90 100 110
....*....|....*....|....*....|..
gi 15596884 156 STDPIGPGEVLFSENFYQACRRCLNEGGILVT 187
Cdd:PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175
|
|
| Spermine_synt_N |
pfam17284 |
Spermidine synthase tetramerization domain; This domain represents the N-terminal ... |
7-54 |
9.33e-13 |
|
Spermidine synthase tetramerization domain; This domain represents the N-terminal tetramerization domain from spermidine synthase.
Pssm-ID: 407397 [Multi-domain] Cd Length: 53 Bit Score: 61.52 E-value: 9.33e-13
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15596884 7 TLYQGYGQRFS--IDNMLHEVRTEHQHLVIFENARMGRVMALDGVIQTTE 54
Cdd:pfam17284 4 TEIHDLGQALEykVEKVLYDEKSEYQDIEIFESKTFGNVLVLDGVVQLTE 53
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
77-188 |
7.98e-10 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 55.13 E-value: 7.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 77 RVLIIGGGDGGMLREVAKHKsVERITMVEIDGTVVDMCKEFlpnhsQGAFDDPRLNLVIDDGMRFVATTEERFDVIISDS 156
Cdd:cd02440 1 RVLDLGCGTGALALALASGP-GARVTGVDISPVALELARKA-----AAALLADNVEVLKGDAEELPPEADESFDVIISDP 74
|
90 100 110
....*....|....*....|....*....|..
gi 15596884 157 TDPIGPGEVlfsENFYQACRRCLNEGGILVTQ 188
Cdd:cd02440 75 PLHHLVEDL---ARFLEEARRLLKPGGVLVLT 103
|
|
| UbiG |
COG2227 |
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ... |
73-186 |
1.05e-06 |
|
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 441829 [Multi-domain] Cd Length: 126 Bit Score: 46.93 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 73 GAARRVLIIGGGDGGMLREVAKHksVERITMVEIDGTVVDMCKEFLPnhsqgafdDPRLNLVIDDgMRFVATTEERFDVI 152
Cdd:COG2227 23 PAGGRVLDVGCGTGRLALALARR--GADVTGVDISPEALEIARERAA--------ELNVDFVQGD-LEDLPLEDGSFDLV 91
|
90 100 110
....*....|....*....|....*....|....*....
gi 15596884 153 ISDST-----DPigpgevlfsENFYQACRRCLNEGGILV 186
Cdd:COG2227 92 ICSEVlehlpDP---------AALLRELARLLKPGGLLL 121
|
|
| MFS_SpdSyn |
NF037959 |
fused MFS/spermidine synthase; Proteins of this family are fusion of a N-terminal MFS (Major ... |
42-184 |
3.37e-05 |
|
fused MFS/spermidine synthase; Proteins of this family are fusion of a N-terminal MFS (Major Facilitator Superfamily) transporter domain and a C-terminal spermidine synthase (SpdSyn)-like domain. The encoding genes usually near the genes encoding S-adenosylmethionine decarboxylase (AdoMetDC) on many bacterial genomes. It has been shown in Shewanella oneidensis that the fused protein aminopropylates a substrate other than putrescine, and has a role outside of polyamine biosynthesis.
Pssm-ID: 468290 [Multi-domain] Cd Length: 480 Bit Score: 44.83 E-value: 3.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 42 RVMALDGVIQTTEADE-----FI-YHEMLTHVPILAHGAAR-RVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMC 114
Cdd:NF037959 236 RLMVLDHLAHGINARDdptvlFTpYAAMLDELARLRMGRADfSAFFIGGGAYTLPRAWAARRPAGRITVAEIDPAVTRVA 315
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15596884 115 KEFLpnhsqgAFDDPRLNLVIDDGMRFVAT-TEERFDVIISDS-TDpIGPGEVLFSENFYQACRRCLNEGGI 184
Cdd:NF037959 316 AEDF------WFDPASATVLHEDARRALRRrPEERFDVIVGDAfTD-IAVPAHLVTREFFELVRARLTPDGV 380
|
|
| SmtA |
COG0500 |
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ... |
74-252 |
1.03e-04 |
|
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];
Pssm-ID: 440266 [Multi-domain] Cd Length: 199 Bit Score: 42.21 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 74 AARRVLIIGGGDGGMLREVAKHKsVERITMVEIDGTVVDMCKEFLPnhsqgAFDDPRLNLVIDDGMRFVATTEERFDVII 153
Cdd:COG0500 26 KGGRVLDLGCGTGRNLLALAARF-GGRVIGIDLSPEAIALARARAA-----KAGLGNVEFLVADLAELDPLPAESFDLVV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 154 SDST----DPIGPGEVLfsenfyQACRRCLNEGGIL-VTQNGTPFMQLEEvRTTAARTDGLFADWHFYQAAVPTyIGGAM 228
Cdd:COG0500 100 AFGVlhhlPPEEREALL------RELARALKPGGVLlLSASDAAAALSLA-RLLLLATASLLELLLLLRLLALE-LYLRA 171
|
170 180
....*....|....*....|....
gi 15596884 229 TFAWGSTHEGLRRLPLETLRQRFR 252
Cdd:COG0500 172 LLAAAATEDLRSDALLESANALEY 195
|
|
| COG2521 |
COG2521 |
Predicted archaeal methyltransferase [General function prediction only]; |
77-192 |
1.61e-04 |
|
Predicted archaeal methyltransferase [General function prediction only];
Pssm-ID: 442011 [Multi-domain] Cd Length: 285 Bit Score: 42.20 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 77 RVLIIGGGDGGMLREVAKhKSVERITMVEIDGTVVDMCKefLPNHSQGAFDdPRLNLVIDDGMRFVAT-TEERFDVIISD 155
Cdd:COG2521 135 RVLDTCTGLGYTAIEALK-RGAREVITVEKDPNVLELAE--LNPWSRELAN-ERIKIILGDASEVIKTfPDESFDAIIHD 210
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 15596884 156 stdpigP------GEvLFSENFYQACRRCLNEGGILVTQNGTP 192
Cdd:COG2521 211 ------PprfslaGE-LYSLEFYRELYRVLKPGGRLFHYTGNP 246
|
|
| RsmC |
COG2813 |
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
63-186 |
4.61e-04 |
|
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA G1207 methylase RsmC is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 442062 [Multi-domain] Cd Length: 191 Bit Score: 40.17 E-value: 4.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 63 MLTHVPILAHGaarRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKE-FLPNHSQGAfddprlNLVIDDGMRF 141
Cdd:COG2813 41 LLEHLPEPLGG---RVLDLGCGYGVIGLALAKRNPEARVTLVDVNARAVELARAnAAANGLENV------EVLWSDGLSG 111
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 15596884 142 VAttEERFDVIIS--------DSTDPIGpgevlfsENFYQACRRCLNEGGILV 186
Cdd:COG2813 112 VP--DGSFDLILSnppfhagrAVDKEVA-------HALIADAARHLRPGGELW 155
|
|
| Tam |
COG4106 |
Trans-aconitate methyltransferase [Energy production and conversion]; |
74-186 |
7.08e-04 |
|
Trans-aconitate methyltransferase [Energy production and conversion];
Pssm-ID: 443282 [Multi-domain] Cd Length: 100 Bit Score: 38.27 E-value: 7.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 74 AARRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPNhsqgafddprLNLVIDDGMRFvaTTEERFDVII 153
Cdd:COG4106 1 PPRRVLDLGCGTGRLTALLAERFPGARVTGVDLSPEMLARARARLPN----------VRFVVADLRDL--DPPEPFDLVV 68
|
90 100 110
....*....|....*....|....*....|....*...
gi 15596884 154 SDST-----DPigpgevlfsENFYQACRRCLNEGGILV 186
Cdd:COG4106 69 SNAAlhwlpDH---------AALLARLAAALAPGGVLA 97
|
|
| Cfa |
COG2230 |
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport ... |
77-188 |
1.04e-03 |
|
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism];
Pssm-ID: 441831 [Multi-domain] Cd Length: 158 Bit Score: 38.76 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 77 RVLIIGGGDGGMLREVAKHKSVeRITMVEIDGTVVDMCKEFLpnhsQGAFDDPRLNLVIDDGMRFVAttEERFDVIIS-D 155
Cdd:COG2230 54 RVLDIGCGWGGLALYLARRYGV-RVTGVTLSPEQLEYARERA----AEAGLADRVEVRLADYRDLPA--DGQFDAIVSiG 126
|
90 100 110
....*....|....*....|....*....|...
gi 15596884 156 STDPIGPGEVlfsENFYQACRRCLNEGGILVTQ 188
Cdd:COG2230 127 MFEHVGPENY---PAYFAKVARLLKPGGRLLLH 156
|
|
| COG4976 |
COG4976 |
Predicted methyltransferase, contains TPR repeat [General function prediction only]; |
70-186 |
4.22e-03 |
|
Predicted methyltransferase, contains TPR repeat [General function prediction only];
Pssm-ID: 444001 [Multi-domain] Cd Length: 181 Bit Score: 37.29 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 70 LAHGAARRVLIIGGGDGGMLREVAKHksVERITMVEIDGTVVDMCKEflpnhsQGAFDdprlNLVIDDgMRFVATTEERF 149
Cdd:COG4976 42 LPPGPFGRVLDLGCGTGLLGEALRPR--GYRLTGVDLSEEMLAKARE------KGVYD----RLLVAD-LADLAEPDGRF 108
|
90 100 110
....*....|....*....|....*....|....*...
gi 15596884 150 DVIIS-DSTDPIGPGEVLFsenfyQACRRCLNEGGILV 186
Cdd:COG4976 109 DLIVAaDVLTYLGDLAAVF-----AGVARALKPGGLFI 141
|
|
| COG4076 |
COG4076 |
Predicted RNA methylase [General function prediction only]; |
76-215 |
9.88e-03 |
|
Predicted RNA methylase [General function prediction only];
Pssm-ID: 443253 [Multi-domain] Cd Length: 230 Bit Score: 36.55 E-value: 9.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596884 76 RRVLIIGGGDG--GMLrevAKHKSVERITMVEIDGTVVDMCKEFLPNHsqgAFDDpRLNLVIDDgmrfvATT---EERFD 150
Cdd:COG4076 37 DVVLDIGTGSGllSML---AARAGAKKVYAVEVNPDIAAVARRIIAAN---GLSD-RITVINAD-----ATDldlPEKAD 104
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15596884 151 VIISD--STDPIGPGEVlfsENFYQACRRCLNEGGILVTQNGTPFMQLEEVRtTAARTDGLFADWHF 215
Cdd:COG4076 105 VIISEmlDTALLDEGQV---PILNHARKRLLKPGGRIIPERITNAAQPVESP-VDAEGFEDWQFDGF 167
|
|
| |
