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Conserved domains on  [gi|15597184|ref|NP_250678|]
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coenzyme PQQ synthesis protein D [Pseudomonas aeruginosa PAO1]

Protein Classification

pyrroloquinoline quinone biosynthesis protein PqqD( domain architecture ID 10011743)

pyrroloquinoline quinone biosynthesis protein PqqD is involved in the biosynthesis of pyrroloquinoline quinone (PQQ)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK02079 PRK02079
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;
6-92 1.41e-56

pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;


:

Pssm-ID: 179362  Cd Length: 88  Bit Score: 168.98  E-value: 1.41e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597184   6 LDSVPMLRRGFRFQFEPAQDCHVLLYPEGMVKLNDSAGEILKLVDGRRDVAAIVAALRERFPEVPGIDEDILAFLEVAHA 85
Cdd:PRK02079  2 RNQVPTLRPGYRFQWEPAQNCHVLLYPEGMIKLNESAGEILGLIDGKRTVAAIIAELQQQFPDVPGLDEDVLEFLEVARA 81


                ....*..
gi 15597184  86 QFWIELQ 92
Cdd:PRK02079 82 KHWIELV 88
 
Name Accession Description Interval E-value
PRK02079 PRK02079
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;
6-92 1.41e-56

pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;


Pssm-ID: 179362  Cd Length: 88  Bit Score: 168.98  E-value: 1.41e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597184   6 LDSVPMLRRGFRFQFEPAQDCHVLLYPEGMVKLNDSAGEILKLVDGRRDVAAIVAALRERFPEVPGIDEDILAFLEVAHA 85
Cdd:PRK02079  2 RNQVPTLRPGYRFQWEPAQNCHVLLYPEGMIKLNESAGEILGLIDGKRTVAAIIAELQQQFPDVPGLDEDVLEFLEVARA 81


                ....*..
gi 15597184  86 QFWIELQ 92
Cdd:PRK02079 82 KHWIELV 88
PQQ_PqqD TIGR03859
coenzyme PQQ biosynthesis protein PqqD; This model identifies PqqD, a protein involved in the ...
 10-90 7.40e-41

coenzyme PQQ biosynthesis protein PqqD; This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 274818  Cd Length: 81  Bit Score: 128.97  E-value: 7.40e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597184   10 PMLRRGFRFQFEPAQDCHVLLYPEGMVKLNDSAGEILKLVDGRRDVAAIVAALRERFPEVPGIDEDILAFLEVAHAQFWI 89
Cdd:TIGR03859  1 PALRRGYRLQWERAQDCWVLLYPEGMVKLNDSAGEILELCDGKRSLAEIIQELAQRFPAAEEIEDDVIAFLAVARAKHWL 80


                 .
gi 15597184   90 E 90
Cdd:TIGR03859 81 E 81
PqqD pfam05402
Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ ...
 28-89 1.15e-14

Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.


Pssm-ID: 461641  Cd Length: 65  Bit Score: 62.11  E-value: 1.15e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15597184   28 VLLYPEG--MVKLNDSAGEILKLVDGRRDVAAIVAALRERFPEVP-GIDEDILAFLEVAHAQFWI 89
Cdd:pfam05402  1 VLLDPETgkYISLNETGAFIWELLDGRTTVEEIVAALAEEYDVDEeEAEADVEAFLEQLREAGLI 65
 
Name Accession Description Interval E-value
PRK02079 PRK02079
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;
6-92 1.41e-56

pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;


Pssm-ID: 179362  Cd Length: 88  Bit Score: 168.98  E-value: 1.41e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597184   6 LDSVPMLRRGFRFQFEPAQDCHVLLYPEGMVKLNDSAGEILKLVDGRRDVAAIVAALRERFPEVPGIDEDILAFLEVAHA 85
Cdd:PRK02079  2 RNQVPTLRPGYRFQWEPAQNCHVLLYPEGMIKLNESAGEILGLIDGKRTVAAIIAELQQQFPDVPGLDEDVLEFLEVARA 81


                ....*..
gi 15597184  86 QFWIELQ 92
Cdd:PRK02079 82 KHWIELV 88
PQQ_PqqD TIGR03859
coenzyme PQQ biosynthesis protein PqqD; This model identifies PqqD, a protein involved in the ...
 10-90 7.40e-41

coenzyme PQQ biosynthesis protein PqqD; This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 274818  Cd Length: 81  Bit Score: 128.97  E-value: 7.40e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597184   10 PMLRRGFRFQFEPAQDCHVLLYPEGMVKLNDSAGEILKLVDGRRDVAAIVAALRERFPEVPGIDEDILAFLEVAHAQFWI 89
Cdd:TIGR03859  1 PALRRGYRLQWERAQDCWVLLYPEGMVKLNDSAGEILELCDGKRSLAEIIQELAQRFPAAEEIEDDVIAFLAVARAKHWL 80


                 .
gi 15597184   90 E 90
Cdd:TIGR03859 81 E 81
PqqD pfam05402
Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ ...
 28-89 1.15e-14

Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.


Pssm-ID: 461641  Cd Length: 65  Bit Score: 62.11  E-value: 1.15e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15597184   28 VLLYPEG--MVKLNDSAGEILKLVDGRRDVAAIVAALRERFPEVP-GIDEDILAFLEVAHAQFWI 89
Cdd:pfam05402  1 VLLDPETgkYISLNETGAFIWELLDGRTTVEEIVAALAEEYDVDEeEAEADVEAFLEQLREAGLI 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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