|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
15-469 |
0e+00 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 537.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 15 QQAIRSLFEIVEGSSEGTVIVDREARIVWINQRYAQRFGLaDPAQAIGRPCESVIPGSLLREVVGSGKPILLDMM--DSA 92
Cdd:COG3829 7 KELEEELEAILDSLDDGIIVVDADGRITYVNRAAERILGL-PREEVIGKNVTELIPNSPLLEVLKTGKPVTGVIQktGGK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 93 KDPLVVMRLPIHDDaGEVIGAIGfaLLDELRSLSPLVTRYLSMQRElastrsqlQARQAKYSFSHFVGTSPVSLEVKRRA 172
Cdd:COG3829 86 GKTVIVTAIPIFED-GEVIGAVE--TFRDITELKRLERKLREEELE--------RGLSAKYTFDDIIGKSPAMKELLELA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 173 RRGAASEAPVLLLGETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPESLLEAEFFGTAPGAFTGAERKGRPGKLQVAQG 252
Cdd:COG3829 155 KRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELADG 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 253 GTLFLDEIGDMPLALQGKLLRVLQEKEFEAVGSNEVIRSDIRLVAATSIDLQQAMREGRFRADLYYRLNVLPIEIPPLRQ 332
Cdd:COG3829 235 GTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRE 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 333 RLDDLPALCESILDSLD---HGRLHELGGDALALLARHAWPGNVRELRNVLERALLLADQRlldaaaLGAALGPLQPLPE 409
Cdd:COG3829 315 RKEDIPLLAEHFLEKFNkkyGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGD------VITPEHLPEYLLE 388
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 410 LPRAADDRPVGDFQQAREAFERDLIGRALAQSAGNVVEAAKRLGLGRSTLYKKIVALGMR 469
Cdd:COG3829 389 EAEAASAAEEGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKYGIK 448
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
4-467 |
9.22e-132 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 394.65 E-value: 9.22e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 4 ADSLQDYQRVRQQAIRslfEIVEGSSEGTVIVDREARIVWINQRYAQRFGLADpAQAIGRPCESVIPGSLlrevvgsgkp 83
Cdd:COG3284 204 LRSFRREWRLRLHFLP---EFLGSLSEGLLAFDEDGRIVAANRAARRLLGLAD-AALLGRPLEELFGLDL---------- 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 84 illDMMDSAKDPLVVMRLPIHDDAGEVIGAIgfalldelrslsplvtryLSMQRELASTRSQLQARQAKYSFSHFVGTSP 163
Cdd:COG3284 270 ---EALPDGARRAPASPRPLRLRDGRRLGAL------------------LRLRPARRAARAAPAGAPAPAALAALAGGDP 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 164 VSLEVKRRARRGAASEAPVLLLGETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPESLLEAEFFGTAPGAFTGAERKGR 243
Cdd:COG3284 329 AMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAFTGARRKGR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 244 PGKLQVAQGGTLFLDEIGDMPLALQGKLLRVLQEKEFEAVGSNEVIRSDIRLVAATSIDLQQAMREGRFRADLYYRLNVL 323
Cdd:COG3284 409 PGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGL 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 324 PIEIPPLRQRlDDLPALCESILDSLDHGRLH-ELGGDALALLARHAWPGNVRELRNVLERALLLADQRLLDAAAlgaalg 402
Cdd:COG3284 489 TLTLPPLRER-EDLPALIEHLLRELAAGRGPlRLSPEALALLAAYPWPGNVRELRNVLRTALALADGGVITVED------ 561
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15597201 403 plqpLPE--LPRAADDRPVGDFQQAR-EAFERDLIGRALAQSAGNVVEAAKRLGLGRSTLYKKIVALG 467
Cdd:COG3284 562 ----LPDelRAELAAAAPAAAAPLTSlEEAERDAILRALRACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
147-467 |
2.53e-125 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 371.22 E-value: 2.53e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 147 QARQAKYSFSHFVGTSPVSLEVKRRARRGAASEAPVLLLGETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPESLLEAE 226
Cdd:COG2204 122 RLRRENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESE 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 227 FFGTAPGAFTGAERKgRPGKLQVAQGGTLFLDEIGDMPLALQGKLLRVLQEKEFEAVGSNEVIRSDIRLVAATSIDLQQA 306
Cdd:COG2204 202 LFGHEKGAFTGAVAR-RIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEEL 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 307 MREGRFRADLYYRLNVLPIEIPPLRQRLDDLPALCESILD--SLDHGRLHELGGDALALLARHAWPGNVRELRNVLERAL 384
Cdd:COG2204 281 VEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLArfAAELGKPVKLSPEALEALLAYDWPGNVRELENVIERAV 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 385 LLADQRLLDaaalgaalgplqplpelpraaddrpVGDFQQAREAFERDLIGRALAQSAGNVVEAAKRLGLGRSTLYKKIV 464
Cdd:COG2204 361 ILADGEVIT-------------------------AEDLPEALEEVERELIERALEETGGNVSRAAELLGISRRTLYRKLK 415
|
...
gi 15597201 465 ALG 467
Cdd:COG2204 416 KYG 418
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
88-461 |
1.90e-104 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 320.97 E-value: 1.90e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 88 MMDSAKDPLVV---MRLPIHDDaGEVIGAIGF-AL---------LDELRSLSPLVT---------RYLSMQRELASTRSQ 145
Cdd:PRK05022 99 LIPGVQESLPVhdcMGLPLFVD-GRLIGALTLdALdpgqfdafsDEELRALAALAAatlrnalliEQLESQAELPQDVAE 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 146 lQARQAKYSFSHFVGTSPVSLEVKRRARRGAASEAPVLLLGETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPESLLEA 225
Cdd:PRK05022 178 -FLRQEALKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAES 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 226 EFFGTAPGAFTGAERKgRPGKLQVAQGGTLFLDEIGDMPLALQGKLLRVLQEKEFEAVGSNEVIRSDIRLVAATSIDLQQ 305
Cdd:PRK05022 257 ELFGHVKGAFTGAISN-RSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLRE 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 306 AMREGRFRADLYYRLNVLPIEIPPLRQRLDDLPALCESILD----SLDHGRLHeLGGDALALLARHAWPGNVRELRNVLE 381
Cdd:PRK05022 336 EVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEqnraRLGLRSLR-LSPAAQAALLAYDWPGNVRELEHVIS 414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 382 RALLLADQRLLDAAAL------GAALGPLQPLPELPRAADDRPVGDFQQAREAFERDLIGRALAQSAGNVVEAAKRLGLG 455
Cdd:PRK05022 415 RAALLARARGAGRIVTleaqhlDLPAEVALPPPEAAAAPAAVVSQNLREATEAFQRQLIRQALAQHQGNWAAAARALELD 494
|
....*.
gi 15597201 456 RSTLYK 461
Cdd:PRK05022 495 RANLHR 500
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
158-326 |
8.26e-97 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 288.92 E-value: 8.26e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 158 FVGTSPVSLEVKRRARRGAASEAPVLLLGETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPESLLEAEFFGTAPGAFTG 237
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 238 AeRKGRPGKLQVAQGGTLFLDEIGDMPLALQGKLLRVLQEKEFEAVGSNEVIRSDIRLVAATSIDLQQAMREGRFRADLY 317
Cdd:pfam00158 81 A-DSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159
|
....*....
gi 15597201 318 YRLNVLPIE 326
Cdd:pfam00158 160 YRLNVIPIE 168
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
125-469 |
8.96e-92 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 286.26 E-value: 8.96e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 125 LSPLVTRYLSMQrELASTRSQLQARQAKYSFSHFVGTSPVSLEVKRRARRGAASEAPVLLLGETGTGKELLAHAIHSASP 204
Cdd:TIGR02915 109 LKLIVDRAFHLY-TLETENRRLQSALGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSD 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 205 RAHKAFVSVNAAAIPESLLEAEFFGTAPGAFTGAERKgRPGKLQVAQGGTLFLDEIGDMPLALQGKLLRVLQEKEFEAVG 284
Cdd:TIGR02915 188 RKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQ-TLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLG 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 285 SNEVIRSDIRLVAATSIDLQQAMREGRFRADLYYRLNVLPIEIPPLRQRLDDLPALCESILD--SLDHGR-LHELGGDAL 361
Cdd:TIGR02915 267 GREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLErfARELKRkTKGFTDDAL 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 362 ALLARHAWPGNVRELRNVLERALLLADQRLLDAAALGaalgplqpLPELPRAADDRPVgDFQQAREAFERDLIGRALAQS 441
Cdd:TIGR02915 347 RALEAHAWPGNVRELENKVKRAVIMAEGNQITAEDLG--------LDARERAETPLEV-NLREVRERAEREAVRKAIARV 417
|
330 340
....*....|....*....|....*...
gi 15597201 442 AGNVVEAAKRLGLGRSTLYKKIVALGMR 469
Cdd:TIGR02915 418 DGNIARAAELLGITRPTLYDLMKKHGIK 445
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
58-388 |
3.83e-91 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 287.38 E-value: 3.83e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 58 AQAIGRPCESVIpgsllREVVGSGKPILLDmmDSAKDPLVVMRLPIHDD------------AGEVIGAIGFALLDELRSL 125
Cdd:TIGR01817 65 APIRYRVGEGAI-----GQIVATGNSLVVP--DVAAEPLFLDRLSLYDPgpvpfigvpikaDSETIGVLAADRDFRSRER 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 126 SPLVTRYLSM-----------QRELASTRSQLQA-----------------RQAKYSFSHFVGTSPVSLEVKRRARRGAA 177
Cdd:TIGR01817 138 LEEEVRFLEMvanligqtvrlHRLVAQRRERLIAeavqlskqlrdkapeiaRRRSGKEDGIIGKSPAMRQVVDQARVVAR 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 178 SEAPVLLLGETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPESLLEAEFFGTAPGAFTGA--ERKGRpgkLQVAQGGTL 255
Cdd:TIGR01817 218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAiaQRKGR---FELADGGTL 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 256 FLDEIGDMPLALQGKLLRVLQEKEFEAVGSNEVIRSDIRLVAATSIDLQQAMREGRFRADLYYRLNVLPIEIPPLRQRLD 335
Cdd:TIGR01817 295 FLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERRE 374
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 15597201 336 DLPALCESILDSLDH--GRLHELGGDALALLARHAWPGNVRELRNVLERALLLAD 388
Cdd:TIGR01817 375 DIPLLAEAFLEKFNRenGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLSR 429
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
119-468 |
2.74e-90 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 282.51 E-value: 2.74e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 119 LDELRSLsplVTRYLSMQRELASTRSQLQARQAKYSFSHFVGTSPVSLEVKRRARRGAASEAPVLLLGETGTGKELLAHA 198
Cdd:PRK11361 109 LDELNLI---VQRALQLQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARA 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 199 IHSASPRAHKAFVSVNAAAIPESLLEAEFFGTAPGAFTGAERKgRPGKLQVAQGGTLFLDEIGDMPLALQGKLLRVLQEK 278
Cdd:PRK11361 186 IHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTL-RQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQER 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 279 EFEAVGSNEVIRSDIRLVAATSIDLQQAMREGRFRADLYYRLNVLPIEIPPLRQRLDDLPALCESILD--SLDHGR-LHE 355
Cdd:PRK11361 265 EFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQkfSSENQRdIID 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 356 LGGDALALLARHAWPGNVRELRNVLERA-------LLLADQRLLDAAALGAALGPLQPLPELPRaaddrpvgDFQQAREA 428
Cdd:PRK11361 345 IDPMAMSLLTAWSWPGNIRELSNVIERAvvmnsgpIIFSEDLPPQIRQPVCNAGEVKTAPVGER--------NLKEEIKR 416
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 15597201 429 FERDLIGRALAQSAGNVVEAAKRLGLGRSTLYKKIVALGM 468
Cdd:PRK11361 417 VEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGI 456
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
35-388 |
9.04e-90 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 282.85 E-value: 9.04e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 35 VDREARIVWINQRYAQRFGLaDPAQAIGRPCESVIPG-SLLREVVGS------------GKPILLDMMdsakdplvvmrl 101
Cdd:COG3283 96 IDLKGKIELANPAALSLLGL-SEEELIGQPLSELLKGfNFSRWLESNeprpqservvinGQDYLADIL------------ 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 102 PIH--DDAGEVI--GAigfalldelrslspLVTryLSMQRELASTRSQLQARQAKySFSHFVGTSPVSLEVKRRARRGAA 177
Cdd:COG3283 163 PIYlpDEEGKSIlaGA--------------VVT--LKSAARLGEQLQALQVNDDS-GFDHIVASSPKMRQVIRQAKKMAM 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 178 SEAPVLLLGETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPESLLEAEFFGTAPGAFtGAERKGRPGKLQVAQGGTLFL 257
Cdd:COG3283 226 LDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAF-GNAREGKKGLFEQANGGTVFL 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 258 DEIGDMPLALQGKLLRVLQEKEFEAVGSNEVIRSDIRLVAATSIDLQQAMREGRFRADLYYRLNVLPIEIPPLRQRLDDL 337
Cdd:COG3283 305 DEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYYRLNVLTLTLPPLRERKSDI 384
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 15597201 338 PALCESILD--SLDHGRLH-ELGGDALALLARHAWPGNVRELRNVLERALLLAD 388
Cdd:COG3283 385 LPLAEHFVArfSQQLGRPRpRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLE 438
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
129-465 |
1.02e-82 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 265.43 E-value: 1.02e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 129 VTRYLSMQRELASTRSQLQARqakYSFSHFVGTSPVSLEVKRRARRGAASEAPVLLLGETGTGKELLAHAIHSASP---- 204
Cdd:PRK15424 195 MTRMTLRHNTHYATRNALRTR---YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFarhd 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 205 ----RAHKAFVSVNAAAIPESLLEAEFFGTAPGAFTGAERKGRPGKLQVAQGGTLFLDEIGDMPLALQGKLLRVLQEKEF 280
Cdd:PRK15424 272 arqgKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEV 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 281 EAVGSNEVIRSDIRLVAATSIDLQQAMREGRFRADLYYRLNVLPIEIPPLRQRLDDLPALCESILDS--------LDHGR 352
Cdd:PRK15424 352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQslaalsapFSAAL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 353 LHELgGDALALLARHAWPGNVRELRNVLER-ALLLADQRlldaAALGAALGPLQPLPELPRAAddrpvgdFQQAREAFER 431
Cdd:PRK15424 432 RQGL-QQCETLLLHYDWPGNVRELRNLMERlALFLSVEP----TPDLTPQFLQLLLPELARES-------AKTPAPRLLA 499
|
330 340 350
....*....|....*....|....*....|....
gi 15597201 432 DLIGRALAQSAGNVVEAAKRLGLGRSTLYKKIVA 465
Cdd:PRK15424 500 ATLQQALERFNGDKTAAANYLGISRTTLWRRLKA 533
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
142-465 |
4.50e-82 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 263.64 E-value: 4.50e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 142 TRSQLQARqakYSFSHFVGTSPVSLEVKRRARRGAASEAPVLLLGETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPES 221
Cdd:TIGR02329 201 TRNQLRTR---YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 222 LLEAEFFGTAPGAFTGAERKGRPGKLQVAQGGTLFLDEIGDMPLALQGKLLRVLQEKEFEAVGSNEVIRSDIRLVAATSI 301
Cdd:TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 302 DLQQAMREGRFRADLYYRLNVLPIEIPPLRQRLDDLPALCESILDS--------LDHGRLHELGGDALALLaRHAWPGNV 373
Cdd:TIGR02329 358 ALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQaaaalrlpDSEAAAQVLAGVADPLQ-RYPWPGNV 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 374 RELRNVLER-ALLLADQRLLDAAALGAALGplqpLPELPRA-ADDRPVGDFQQAREAFERDLIGRALAQSAGNVVEAAKR 451
Cdd:TIGR02329 437 RELRNLVERlALELSAMPAGALTPDVLRAL----APELAEAsGKGKTSALSLRERSRVEALAVRAALERFGGDRDAAAKA 512
|
330
....*....|....
gi 15597201 452 LGLGRSTLYKKIVA 465
Cdd:TIGR02329 513 LGISRTTLWRRLKA 526
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
157-461 |
1.11e-79 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 254.76 E-value: 1.11e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 157 HFVGTSPVSLEVKRRARRGAASEAPVLLLGETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPESLLEAEFFGTAPGAFT 236
Cdd:PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFT 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 237 GAERKgRPGKLQVAQGGTLFLDEIGDMPLALQGKLLRVLQEKEFEAVGSNEVIRSDIRLVAATSIDLQQAMREGRFRADL 316
Cdd:PRK15115 215 GAVSN-REGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDL 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 317 YYRLNVLPIEIPPLRQRLDDLPALCESIL-DSLDHGR--LHELGGDALALLARHAWPGNVRELRNVLERALLLAdqrlld 393
Cdd:PRK15115 294 YYRLNVVSLKIPALAERTEDIPLLANHLLrQAAERHKpfVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT------ 367
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15597201 394 aaalgAALGPLQPLPELPRAADDRPVGDFQQAREAFERDLIGRALAQSAGNVVEAAKRLGLGRSTLYK 461
Cdd:PRK15115 368 -----SSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYK 430
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
155-471 |
4.15e-79 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 259.76 E-value: 4.15e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 155 FSHFVGTSPVSLEVKRRARRGAASEAPVLLLGETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPESLLEAEFFGTAPGA 234
Cdd:PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 235 FTGAERKgRPGKLQVAQGGTLFLDEIGDMPLALQGKLLRVLQEKEFEAVGSNEVIRSDIRLVAATSIDLQQAMREGRFRA 314
Cdd:PRK15429 455 FTGASAQ-RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 315 DLYYRLNVLPIEIPPLRQRLDDLPALCESILDSLDH--GR-LHELGGDALALLARHAWPGNVRELRNVLERALLLADQRL 391
Cdd:PRK15429 534 DLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARrmGRnIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV 613
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 392 LDAAalgaalgplqpLPELPRAADDRPVGDFQQAREAF-ERDLIGRALAQSAGNVV---EAAKRLGLGRSTLYKKIVALG 467
Cdd:PRK15429 614 LQLS-----------LPDITLPEPETPPAATVVAQEGEdEYQLIVRVLKETNGVVAgpkGAAQRLGLKRTTLLSRMKRLG 682
|
....
gi 15597201 468 MRLD 471
Cdd:PRK15429 683 IDKS 686
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
134-463 |
1.51e-78 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 251.87 E-value: 1.51e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 134 SMQRELASTR-SQLQARQAKYSFSHFVGTSPVSLEVKRRARRGAASEAPVLLLGETGTGKELLAHAIHSASPRAHKAFVS 212
Cdd:PRK10365 116 TLEKALAHTHsIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVT 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 213 VNAAAIPESLLEAEFFGTAPGAFTGAERKgRPGKLQVAQGGTLFLDEIGDMPLALQGKLLRVLQEKEFEAVGSNEVIRSD 292
Cdd:PRK10365 196 LNCAALNESLLESELFGHEKGAFTGADKR-REGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVD 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 293 IRLVAATSIDLQQAMREGRFRADLYYRLNVLPIEIPPLRQRLDDLPALCESILDSLDHGRLHELGG---DALALLARHAW 369
Cdd:PRK10365 275 VRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGftpQAMDLLIHYDW 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 370 PGNVRELRNVLERALLLADQRlLDAAALGAALGPLQPLPELPrAADDRPVGDfqqareaFERDLIGRALAQSAGNVVEAA 449
Cdd:PRK10365 355 PGNIRELENAVERAVVLLTGE-YISERELPLAIASTPIPLGQ-SQDIQPLVE-------VEKEVILAALEKTGGNKTEAA 425
|
330
....*....|....
gi 15597201 450 KRLGLGRSTLYKKI 463
Cdd:PRK10365 426 RQLGITRKTLLAKL 439
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
4-463 |
5.52e-73 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 242.66 E-value: 5.52e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 4 ADSLQ-DYQRVRQQairsLFEIVEGSSEGTVIVDREARIVWINQRYAQRFGLaDPAQAIGRPCESVI--PgSLLREVVGS 80
Cdd:PRK11388 191 TDSLLaESNRHLNQ----LNALLESMDDGVIAWDEQGNLQFLNAQAARLLRL-DATASQGRAITELLtlP-AVLQQAIKQ 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 81 GKPilLDMMDSAKD------PLVVMRLPIHDDAGevigaIGFALLdelrsLSPLvtrylSMQRELAstrsQLQARQAKYS 154
Cdd:PRK11388 265 AHP--LKHVEVTFEsqgqfiDAVITLKPIIEGQG-----TSFILL-----LHPV-----EQMRQLM----TSQLGKVSHT 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 155 FSHFVGTSPVSLEVKRRARRGAASEAPVLLLGETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPESLLEAEFFGTAPGA 234
Cdd:PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTD 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 235 ftgaERKGRPGKLQVAQGGTLFLDEIGDMPLALQGKLLRVLQEKEFEAVGSNEVIRSDIRLVAATSIDLQQAMREGRFRA 314
Cdd:PRK11388 404 ----SENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 315 DLYYRLNVLPIEIPPLRQRLDDLPALCESILDSLD--HGRLHELGGDALALLARHAWPGNVRELRNVLERALLLADQrll 392
Cdd:PRK11388 480 QLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEkrFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDN--- 556
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15597201 393 daaalgaALGPLQPLPE-----LPRAADDRPVGDFQQAREAFERDLIGRALAQSAGNVVEAAKRLGLGRSTLYKKI 463
Cdd:PRK11388 557 -------GRIRLSDLPEhlfteQATDDVSATRLSTSLSLAELEKEAIINAAQVCGGRIQEMAALLGIGRTTLWRKM 625
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
34-468 |
5.73e-73 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 238.23 E-value: 5.73e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 34 IVDREARIVWINQRYAQRFGLA----DPAQAIGRPCESVIPGSLLREVVGSGKP--ILLDMMDSAKDPLVVMRLPIHDDA 107
Cdd:PRK10923 8 VVDDDSSIRWVLERALAGAGLTcttfENGNEVLEALASKTPDVLLSDIRMPGMDglALLKQIKQRHPMLPVIIMTAHSDL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 108 GEVIGAIGFALLDELRSLSPLVTRYLSMQRELASTRSQLQAR--QAKYSFSHFVGTSPVSLEVKRRARRGAASEAPVLLL 185
Cdd:PRK10923 88 DAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRniQVNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLIN 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 186 GETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPESLLEAEFFGTAPGAFTGAERKgRPGKLQVAQGGTLFLDEIGDMPL 265
Cdd:PRK10923 168 GESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTI-RQGRFEQADGGTLFLDEIGDMPL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 266 ALQGKLLRVLQEKEFEAVGSNEVIRSDIRLVAATSIDLQQAMREGRFRADLYYRLNVLPIEIPPLRQRLDDLPALCESIL 345
Cdd:PRK10923 247 DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFL 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 346 DSldhgRLHELG-------GDALALLARHAWPGNVRELRNVLE--------RALLLAD---QRLLDAAALGAALGPLQPL 407
Cdd:PRK10923 327 QV----AARELGveakllhPETEAALTRLAWPGNVRQLENTCRwltvmaagQEVLIQDlpgELFESTVPESTSQMQPDSW 402
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15597201 408 PELPRAADDRPVGDFQQ-----AREAFERDLIGRALAQSAGNVVEAAKRLGLGRSTLYKKIVALGM 468
Cdd:PRK10923 403 ATLLAQWADRALRSGHQnllseAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
184-469 |
6.19e-69 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 223.57 E-value: 6.19e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 184 LLGETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPESLLEAeffgtapgaftgaerkgrpgklqvaqggtlfldeigdm 263
Cdd:COG3604 120 ILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES-------------------------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 264 plalqgkllrvLQEKEFEAVGSNEVIRSDIRLVAATSIDLQQAMREGRFRADLYYRLNVLPIEIPPLRQRLDDLPALCES 343
Cdd:COG3604 162 -----------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDIPLLAEH 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 344 ILD--SLDHGR-LHELGGDALALLARHAWPGNVRELRNVLERALLLADQRLLDAAAlgaalgplqpLPELPRaaddrpvg 420
Cdd:COG3604 231 FLEkfSRRLGKpILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADD----------LAPGSR-------- 292
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 15597201 421 dfqQAREAFERDLIGRALAQSAGNVVEAAKRLGLGRSTLYKKIVALGMR 469
Cdd:COG3604 293 ---EALEEVEREHILEALERTGGNIAGAARLLGLTPSTLRSRMKKLGIK 338
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
135-384 |
1.95e-63 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 214.17 E-value: 1.95e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 135 MQRELASTRSQLQ--ARQAKYSFSHFVGTSPVSLEVKRRARRGAASEAPVLLLGETGTGKELLAHAIHSASPRAHKAFVS 212
Cdd:PRK10820 181 MLRSTARMGRQLQnlAVNDDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 213 VNAAAIPESLLEAEFFGTAPGAFTGAeRKGRPGKLQVAQGGTLFLDEIGDMPLALQGKLLRVLQEKEFEAVGSNEVIRSD 292
Cdd:PRK10820 261 LNCASIPDDVVESELFGHAPGAYPNA-LEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 293 IRLVAATSIDLQQAMREGRFRADLYYRLNVLPIEIPPLRQRLDDLPALCESILD--SLDHGRLH-ELGGDALALLARHAW 369
Cdd:PRK10820 340 VRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVArfADEQGVPRpKLAADLNTVLTRYGW 419
|
250
....*....|....*
gi 15597201 370 PGNVRELRNVLERAL 384
Cdd:PRK10820 420 PGNVRQLKNAIYRAL 434
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
166-454 |
5.48e-61 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 202.21 E-value: 5.48e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 166 LEVKRRARRGAASEAPVLLLGETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPESLLEAEFFGTAPGAFTGAERKgRPG 245
Cdd:PRK11608 16 LEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKR-HPG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 246 KLQVAQGGTLFLDEIGDMPLALQGKLLRVLQEKEFEAVGSNEVIRSDIRLVAATSIDLQQAMREGRFRADLYYRLNVLPI 325
Cdd:PRK11608 95 RFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVV 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 326 EIPPLRQRLDDLPALCESILDSLdhgrLHELG--------GDALALLARHAWPGNVRELRNVLERAL------------L 385
Cdd:PRK11608 175 QLPPLRERQSDIMLMAEHFAIQM----CRELGlplfpgftERARETLLNYRWPGNIRELKNVVERSVyrhgtseypldnI 250
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15597201 386 LADQRLLDAAALGAALGPLQPLPELPraADDRpvgDFQQAReafERDLIGRALAQSAGNVVEAAKRLGL 454
Cdd:PRK11608 251 IIDPFKRRPAEEAIAVSETTSLPTLP--LDLR---EWQHQQ---EKELLQRSLQQAKFNQKRAAELLGL 311
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
167-329 |
6.90e-22 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 91.82 E-value: 6.90e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 167 EVKRRARRgaASEAPVLLLGETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPESLLEAEFFGTapgaftgAERKGRPGK 246
Cdd:cd00009 9 ALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGH-------FLVRLLFEL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 247 LQVAQGGTLFLDEIGDMPLALQGKLLRVLQEKEFEAvgsneVIRSDIRLVAATSIDLqqamrEGRFRADLYYRLNvLPIE 326
Cdd:cd00009 80 AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPL-----LGDLDRALYDRLD-IRIV 148
|
...
gi 15597201 327 IPP 329
Cdd:cd00009 149 IPL 151
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
159-330 |
1.70e-20 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 87.40 E-value: 1.70e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 159 VGTSPVSLEVKRRARRGAASEAPVLLLGETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPESLLEAeffgtapgaftga 238
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLEQ------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 239 erkgrpgklqvAQGGTLFLDEIGDMPLALQGKLLRVLQEKEfeavgsneviRSDIRLVAATSIDLQQAMREGRFRADLYY 318
Cdd:pfam14532 68 -----------AKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYF 126
|
170
....*....|..
gi 15597201 319 RLNVLPIEIPPL 330
Cdd:pfam14532 127 ELSALRLHVPPL 138
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
181-333 |
1.57e-19 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 92.09 E-value: 1.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 181 PVLLLGETGTGKELLAHAIH----SASPRAHKA-FVSVNAAAI---PEsLLEAEFFGTAPGAFTGAErKGRPGKLQVAQG 252
Cdd:COG1221 132 HTLILGPTGVGKSFFAELMYeyaiEIGVLPEDApFVVFNCADYannPQ-LLMSQLFGYVKGAFTGAD-KDKEGLIEKADG 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 253 GTLFLDEIGDMPLALQGKLLRVLQEKEFEAVGSNEVIR-SDIRLVAATSIDLQQA-----MRegrfradlyyRLNVLpIE 326
Cdd:COG1221 210 GILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGETEKTRkANVRIIFATTEDPESSllktfLR----------RIPMV-IK 278
|
....*..
gi 15597201 327 IPPLRQR 333
Cdd:COG1221 279 LPSLEER 285
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
181-320 |
2.59e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.84 E-value: 2.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 181 PVLLLGETGTGKELLAHAIHSASPRAHKAFVSVNAAAIPE---SLLEAEFFGTAPGAFTGAER-KGRPGKLQVAQGGTLF 256
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEevlDQLLLIIVGGKKASGSGELRlRLALALARKLKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15597201 257 LDEIGDMPLALQGKLLRVLqekEFEAVGSNEVIRSDIRLVAAT--SIDLQQAMREGRFRADLYYRL 320
Cdd:smart00382 84 LDEITSLLDAEQEALLLLL---EELRLLLLLKSEKNLTVILTTndEKDLGPALLRRRFDRRIVLLL 146
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
426-463 |
4.13e-09 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 52.01 E-value: 4.13e-09
10 20 30
....*....|....*....|....*....|....*...
gi 15597201 426 REAFERDLIGRALAQSAGNVVEAAKRLGLGRSTLYKKI 463
Cdd:pfam02954 1 LEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKL 38
|
|
| PAS_4 |
pfam08448 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
25-117 |
5.65e-08 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain is associated to signalling systems and works as a signal sensor domain. It recognizes differently substituted aromatic hydrocarbons, oxygen, different dodecanoic acids, autoinducers, 3,5-dimethyl-pyrazin-2-ol and N-alanyl-aminoacetone (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 312075 [Multi-domain] Cd Length: 110 Bit Score: 50.88 E-value: 5.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 25 VEGSSEGTVIVDREARIVWINQRYAQRFGLaDPAQAIGRPCESVIPG-------SLLREVVGSGKPI--LLDMMDSAKDP 95
Cdd:pfam08448 1 LDSLPDALAVLDPDGRVRYANAAAAELFGL-PPEELLGKTLAELLPPedaarleRALRRALEGEEPIdfLEELLLNGEER 79
|
90 100
....*....|....*....|...
gi 15597201 96 LVVMRL-PIHDDAGEVIGAIGFA 117
Cdd:pfam08448 80 HYELRLtPLRDPDGEVIGVLVIS 102
|
|
| CitA |
COG3290 |
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ... |
10-145 |
3.20e-06 |
|
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];
Pssm-ID: 442519 [Multi-domain] Cd Length: 389 Bit Score: 49.08 E-value: 3.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 10 YQRVRQQAIRSLFE----IVEGSSEGTVIVDREARIVWINQRYAQRFGLadpaQAIGRPCESVIpgsllREVVGSGKpiL 85
Cdd:COG3290 71 LLLKLLEEIARLVEereaVLESIREGVIAVDRDGRITLINDAARRLLGL----DAIGRPIDEVL-----AEVLETGE--R 139
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15597201 86 LDMMDSAKDPLVVMRLPIHDDaGEVIGAIG-FALLDELRSLsplvTRYLSMQRELA-STRSQ 145
Cdd:COG3290 140 DEEILLNGRVLVVNRVPIRDD-GRVVGAVAtFRDRTELERL----EEELEGVKELAeALRAQ 196
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
11-117 |
6.41e-06 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 47.71 E-value: 6.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 11 QRVRQQAIRSLFEIVEGSSEGTVIVDREARIVWINQRYAQRFGLaDPAQAIGRPCESVIPGS-------LLREVVGSGKP 83
Cdd:COG2202 3 EEALEESERRLRALVESSPDAIIITDLDGRILYVNPAFERLTGY-SAEELLGKTLRDLLPPEdddefleLLRAALAGGGV 81
|
90 100 110
....*....|....*....|....*....|....*...
gi 15597201 84 ILLDMMDSAKD----PLVVMRLPIHDDAGEVIGAIGFA 117
Cdd:COG2202 82 WRGELRNRRKDgslfWVELSISPVRDEDGEITGFVGIA 119
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
427-468 |
8.07e-06 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 44.03 E-value: 8.07e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 15597201 427 EAFERDLIGRALAQSAGNVVEAAKRLGLGRSTLYKKIVALGM 468
Cdd:COG2901 41 AEVEKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQYGL 82
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
181-334 |
1.82e-05 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 44.21 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 181 PVLLLGETGTGK----ELLAHAIHSAsprahkafvSVNAAAIPESLLEAEFFG---TAPGaftGAERKGRPGKLQVAQGG 253
Cdd:pfam07728 1 GVLLVGPPGTGKtelaERLAAALSNR---------PVFYVQLTRDTTEEDLFGrrnIDPG---GASWVDGPLVRAAREGE 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 254 TLFLDEIGDMPLALQGKLLRVLQEKEFEAVGSNEVIRS---DIRLVAATSidlqqamregrfraDLYYRLNVLPieiPPL 330
Cdd:pfam07728 69 IAVLDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATMN--------------PLDRGLNELS---PAL 131
|
....
gi 15597201 331 RQRL 334
Cdd:pfam07728 132 RSRF 135
|
|
| PRK11086 |
PRK11086 |
sensory histidine kinase DcuS; Provisional |
17-114 |
4.57e-05 |
|
sensory histidine kinase DcuS; Provisional
Pssm-ID: 236839 [Multi-domain] Cd Length: 542 Bit Score: 45.67 E-value: 4.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 17 AIRSLFE----IVEGSSEGTVIVDREARIVWINQRYAQRFGLADPAQ--AIGRPCESVIPGSLLREVVGSGKPILLDMMD 90
Cdd:PRK11086 215 EISTLFEqrqaMLQSIKEGVIAVDDRGEVTLINDEAKRLFNYKKGLEddPLGTDVESWMPVSRLKEVLRTGTPRRDEEIN 294
|
90 100
....*....|....*....|....
gi 15597201 91 SAKDPLVVMRLPIHDDaGEVIGAI 114
Cdd:PRK11086 295 INGRLLLTNTVPVRVN-GEIIGAI 317
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
15-148 |
1.73e-04 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 43.68 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 15 QQAIRSLFEIVEGSSEGTVIVDREARIVWINQRYAQRFGLaDPAQAIGRPCESVIPG-----SLLREVVGSGKP-----I 84
Cdd:COG3852 3 RESEELLRAILDSLPDAVIVLDADGRITYVNPAAERLLGL-SAEELLGRPLAELFPEdsplrELLERALAEGQPvtereV 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15597201 85 LLDMMDSAKDPLVVMRLPIHDDAGEVigaigfALLDELRSlsplVTRYLSMQRELAStRSQLQA 148
Cdd:COG3852 82 TLRRKDGEERPVDVSVSPLRDAEGEG------GVLLVLRD----ITERKRLERELRR-AEKLAA 134
|
|
| PAS |
pfam00989 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
24-117 |
3.64e-04 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395786 [Multi-domain] Cd Length: 113 Bit Score: 40.09 E-value: 3.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597201 24 IVEGSSEGTVIVDREARIVWINQRYAQRFGLaDPAQAIGRPCESVIPGSLLREVV------------GSGKPILLDMMDS 91
Cdd:pfam00989 6 ILESLPDGIFVVDEDGRILYVNAAAEELLGL-SREEVIGKSLLDLIPEEDDAEVAellrqallqgeeSRGFEVSFRVPDG 84
|
90 100
....*....|....*....|....*.
gi 15597201 92 AKDPLVVMRLPIHDDAGEVIGAIGFA 117
Cdd:pfam00989 85 RPRHVEVRASPVRDAGGEILGFLGVL 110
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
21-70 |
5.45e-04 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 38.15 E-value: 5.45e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15597201 21 LFEIVEGSSEGTVIVDREARIVWINQRYAQRFGLaDPAQAIGRPCESVIP 70
Cdd:smart00091 3 LRAILESLPDGIFVLDLDGRILYANPAAEELLGY-SPEELIGKSLLELIH 51
|
|
| PAS_8 |
pfam13188 |
PAS domain; PAS domains are involved in many signalling proteins where they are used as a ... |
24-70 |
7.35e-04 |
|
PAS domain; PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Heme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. This domain recognizes oxygen and CO (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 463802 [Multi-domain] Cd Length: 65 Bit Score: 37.91 E-value: 7.35e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 15597201 24 IVEGSSEGTVIVDREARIVWINQRYAQRFGLADPAQAIGRPCESVIP 70
Cdd:pfam13188 6 LFESSPDGILVLDEGGRIIYVNPAALELLGYELLGELLGELLDLLDP 52
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
4-78 |
8.13e-04 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 41.87 E-value: 8.13e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15597201 4 ADSLQDYQRVRQQAIRSLFEIVEGSSEGTVIVDREARIVWINQRYAQRFGLaDPAQAIGRPCESVIPGSLLREVV 78
Cdd:COG5000 75 TDQLKEQREELEERRRYLETILENLPAGVIVLDADGRITLANPAAERLLGI-PLEELIGKPLEELLPELDLAELL 148
|
|
| |
