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Conserved domains on  [gi|15597656|ref|NP_251150|]
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hypothetical protein PA2460 [Pseudomonas aeruginosa PAO1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PT-VENN super family cl04783
Pre-toxin domain with VENN motif; This family represents a conserved region found in many ...
 5-51 1.56e-03

Pre-toxin domain with VENN motif; This family represents a conserved region found in many bacterial porlymorphic toxins which is located before the C-terminal toxin modules.


The actual alignment was detected with superfamily member pfam04829:

Pssm-ID: 428147  Cd Length: 52  Bit Score: 33.86  E-value: 1.56e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 15597656    5 EKKGLLTMSSQLIGLLAASTQGDADAkSLQTGAWVARNATQHNYLSH 51
Cdd:pfam04829  7 EEKQTVSALSTLAAGLAGGVVGGSTA-DAVTGAQAAKNAVENNFLSD 52
 
Name Accession Description Interval E-value
PT-VENN pfam04829
Pre-toxin domain with VENN motif; This family represents a conserved region found in many ...
 5-51 1.56e-03

Pre-toxin domain with VENN motif; This family represents a conserved region found in many bacterial porlymorphic toxins which is located before the C-terminal toxin modules.


Pssm-ID: 428147  Cd Length: 52  Bit Score: 33.86  E-value: 1.56e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 15597656    5 EKKGLLTMSSQLIGLLAASTQGDADAkSLQTGAWVARNATQHNYLSH 51
Cdd:pfam04829  7 EEKQTVSALSTLAAGLAGGVVGGSTA-DAVTGAQAAKNAVENNFLSD 52
 
Name Accession Description Interval E-value
PT-VENN pfam04829
Pre-toxin domain with VENN motif; This family represents a conserved region found in many ...
 5-51 1.56e-03

Pre-toxin domain with VENN motif; This family represents a conserved region found in many bacterial porlymorphic toxins which is located before the C-terminal toxin modules.


Pssm-ID: 428147  Cd Length: 52  Bit Score: 33.86  E-value: 1.56e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 15597656    5 EKKGLLTMSSQLIGLLAASTQGDADAkSLQTGAWVARNATQHNYLSH 51
Cdd:pfam04829  7 EEKQTVSALSTLAAGLAGGVVGGSTA-DAVTGAQAAKNAVENNFLSD 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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