|
Name |
Accession |
Description |
Interval |
E-value |
| AcrA |
COG0845 |
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope ... |
44-377 |
1.54e-86 |
|
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms];
Pssm-ID: 440606 [Multi-domain] Cd Length: 324 Bit Score: 266.04 E-value: 1.54e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 44 VIEQPLNEWDEFTGRLEAPESVELRPRVSGYIDRVAFHEGALVKKGDLLFQIDPRPFEAEVKRLEAQLQQARAAQARSVN 123
Cdd:COG0845 3 VERGDVPETVEATGTVEARREVEVRARVSGRVEEVLVDEGDRVKKGQVLARLDPPDLQAALAQAQAQLAAAQAQLELAKA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 124 EAQRGERLRASNAISAELADARTTAAQEAKAAVAATQAQLDAARLNLSFTRITAPIDGRVSRAEVTAGNLVNSGeTLLTT 203
Cdd:COG0845 83 ELERYKALLKKGAVSQQELDQAKAALDQAQAALAAAQAALEQARANLAYTTIRAPFDGVVGERNVEPGQLVSAG-TPLFT 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 204 LVSTDKVYAYFDADERVFLKYvelarqagrdtRSESPVYLGLSSEDGNPHLGRLDFLDNQVNPRTGTIRGRAVFDNAKGE 283
Cdd:COG0845 162 IADLDPLEVEFDVPESDLARL-----------KVGQPVTVTLDAGPGKTFEGKVTFIDPAVDPATRTVRVRAELPNPDGL 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 284 FTPGLYVRLKLVGSKTYAATLIKDEAVGTDLGKKFVLVLDGDNKTVYRTVEMGPKLEGLRIVRSGLSKGDRIVVNGLQRV 363
Cdd:COG0845 231 LRPGMFVRVRIVLGERENALLVPASAVVRDGGGAYVFVVDADGKVERRPVTLGRRDGDQVEVLSGLKAGDRVVVSGLQRL 310
|
330
....*....|....
gi 15597689 364 RPGMQVDPQKVEMA 377
Cdd:COG0845 311 RDGAKVRVVEAAAP 324
|
|
| RND_mfp |
TIGR01730 |
RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion ... |
39-369 |
7.40e-71 |
|
RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273776 [Multi-domain] Cd Length: 322 Bit Score: 225.66 E-value: 7.40e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 39 VSVAEVIEQPLNEWDEFTGRLEAPESVELRPRVSGYIDRVAFHEGALVKKGDLLFQIDPRPFEAEVKRLEAQLQQARAAQ 118
Cdd:TIGR01730 1 VTVATVESETLANTLTFPGSLEAVDEADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 119 ARSVNEAQRGERLRASNAISAELADARTTAAQEAKAAVAATQAQLDAARLNLSFTRITAPIDGRVSRAEVTAGNLVNSGE 198
Cdd:TIGR01730 81 ELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 199 TLLtTLVSTDKVYAYFDADERVFLKYvelarqagrdtRSESPVYLGLSSEDGNPHLGRLDFLDNQVNPRTGTIRGRAVFD 278
Cdd:TIGR01730 161 TLA-TIVDLDPLEADFSVPERDLPQL-----------RRGQTLTVELDALPGEEFKGKLRFIDPRVDSGTGTVRVRATFP 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 279 NAKGEFTPGLYVRLKLVGSKTYAATLIKDEAVGTDLGKKFVLVLDGDNKTVYRTVEMGPKLEGLRIVRSGLSKGDRIVVN 358
Cdd:TIGR01730 229 NPDGRLLPGMFGRVTISLKVRSSAIVVPTQAVIEDLNGKYVYVVKNDGKVSKRPVEVGLRNGGYVEIESGLKAGDQIVTA 308
|
330
....*....|.
gi 15597689 359 GLQRVRPGMQV 369
Cdd:TIGR01730 309 GVVKLRDGAKV 319
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
46-357 |
9.88e-58 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 191.87 E-value: 9.88e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 46 EQPLNEWDEFTGRLEA-PESVELRPRVSGYIDRVAFHEGALVKKGDLLFQIDPRPFEAEVKRLEAQLQQARAAQARSVNE 124
Cdd:pfam00529 1 LAPLTKGVEAPGRVVVsGNAKAVQPQVSGIVTRVLVKEGDRVKAGDVLFQLDPTDYQAALDSAEAQLAKAQAQVARLQAE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 125 AQRGERLRASNAISAELADARTTAAQEAKAAVAATQAQLDAARLNLSFTRITAPIDGRVSRAEVTAGNLVNSGE-TLLTT 203
Cdd:pfam00529 81 LDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARRRVLAPIGGISRESLVTAGALVAQAQaNLLAT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 204 LVSTDKVYAYFDADERVFLKYVELARQAGRDTRSESPVYLGLSSEDG------NPHLGRLDFLDNQVNPRTGTIRGRAVF 277
Cdd:pfam00529 161 VAQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDLerteirAPVDGTVAFLSVTVDGGTVSAGLRLMF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 278 DN-AKGEFTPGLYVRLKLVGSKTYAATLIKDEAVGTDLGKKFVLVLDGDNKTVY-RTVEMGPKLEGLRIVRSGLSKGDRI 355
Cdd:pfam00529 241 VVpEDNLLVPGMFVETQLDQVRVGQPVLIPFDAFPQTKTGRFTGVVVGISPDTGpVRVVVDKAQGPYYPLRIGLSAGALV 320
|
..
gi 15597689 356 VV 357
Cdd:pfam00529 321 RL 322
|
|
| PRK15030 |
PRK15030 |
multidrug efflux RND transporter periplasmic adaptor subunit AcrA; |
13-403 |
1.09e-49 |
|
multidrug efflux RND transporter periplasmic adaptor subunit AcrA;
Pssm-ID: 184990 [Multi-domain] Cd Length: 397 Bit Score: 172.98 E-value: 1.09e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 13 LALAAVLVLSACGKAPETTQGMAAPKVSVAEVIEQPLNEWDEFTGRLEAPESVELRPRVSGYIDRVAFHEGALVKKGDLL 92
Cdd:PRK15030 14 LMLSGSLALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 93 FQIDPRPFEAEVKRLEAQLQQARAAQARSVNEAQRGERLRASNAISAELADARTTAAQEAKAAVAATQAQLDAARLNLSF 172
Cdd:PRK15030 94 YQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAY 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 173 TRITAPIDGRVSRAEVTAGNLVNSGE-TLLTTLVSTDKVYAYFDADERVFLKY-VELARQAGRDTRSESPVYLGLSSEDG 250
Cdd:PRK15030 174 TKVTSPISGRIGKSNVTEGALVQNGQaTALATVQQLDPIYVDVTQSSNDFLRLkQELANGTLKQENGKAKVSLITSDGIK 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 251 NPHLGRLDFLDNQVNPRTGTIRGRAVFDNAKGEFTPGLYVRLKLVGSKTYAATLIKDEAVG-TDLGKKFVLVLDGDNKTV 329
Cdd:PRK15030 254 FPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTrTPRGDATVLVVGADDKVE 333
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15597689 330 YRTVEMGPKLEGLRIVRSGLSKGDRIVVNGLQRVRPGMQVDPQKVemaSADTlatlarlRQSVGDSEPPKVAAS 403
Cdd:PRK15030 334 TRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQEV---TADN-------NQQAASGAQPEQSKS 397
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AcrA |
COG0845 |
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope ... |
44-377 |
1.54e-86 |
|
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms];
Pssm-ID: 440606 [Multi-domain] Cd Length: 324 Bit Score: 266.04 E-value: 1.54e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 44 VIEQPLNEWDEFTGRLEAPESVELRPRVSGYIDRVAFHEGALVKKGDLLFQIDPRPFEAEVKRLEAQLQQARAAQARSVN 123
Cdd:COG0845 3 VERGDVPETVEATGTVEARREVEVRARVSGRVEEVLVDEGDRVKKGQVLARLDPPDLQAALAQAQAQLAAAQAQLELAKA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 124 EAQRGERLRASNAISAELADARTTAAQEAKAAVAATQAQLDAARLNLSFTRITAPIDGRVSRAEVTAGNLVNSGeTLLTT 203
Cdd:COG0845 83 ELERYKALLKKGAVSQQELDQAKAALDQAQAALAAAQAALEQARANLAYTTIRAPFDGVVGERNVEPGQLVSAG-TPLFT 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 204 LVSTDKVYAYFDADERVFLKYvelarqagrdtRSESPVYLGLSSEDGNPHLGRLDFLDNQVNPRTGTIRGRAVFDNAKGE 283
Cdd:COG0845 162 IADLDPLEVEFDVPESDLARL-----------KVGQPVTVTLDAGPGKTFEGKVTFIDPAVDPATRTVRVRAELPNPDGL 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 284 FTPGLYVRLKLVGSKTYAATLIKDEAVGTDLGKKFVLVLDGDNKTVYRTVEMGPKLEGLRIVRSGLSKGDRIVVNGLQRV 363
Cdd:COG0845 231 LRPGMFVRVRIVLGERENALLVPASAVVRDGGGAYVFVVDADGKVERRPVTLGRRDGDQVEVLSGLKAGDRVVVSGLQRL 310
|
330
....*....|....
gi 15597689 364 RPGMQVDPQKVEMA 377
Cdd:COG0845 311 RDGAKVRVVEAAAP 324
|
|
| RND_mfp |
TIGR01730 |
RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion ... |
39-369 |
7.40e-71 |
|
RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273776 [Multi-domain] Cd Length: 322 Bit Score: 225.66 E-value: 7.40e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 39 VSVAEVIEQPLNEWDEFTGRLEAPESVELRPRVSGYIDRVAFHEGALVKKGDLLFQIDPRPFEAEVKRLEAQLQQARAAQ 118
Cdd:TIGR01730 1 VTVATVESETLANTLTFPGSLEAVDEADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 119 ARSVNEAQRGERLRASNAISAELADARTTAAQEAKAAVAATQAQLDAARLNLSFTRITAPIDGRVSRAEVTAGNLVNSGE 198
Cdd:TIGR01730 81 ELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 199 TLLtTLVSTDKVYAYFDADERVFLKYvelarqagrdtRSESPVYLGLSSEDGNPHLGRLDFLDNQVNPRTGTIRGRAVFD 278
Cdd:TIGR01730 161 TLA-TIVDLDPLEADFSVPERDLPQL-----------RRGQTLTVELDALPGEEFKGKLRFIDPRVDSGTGTVRVRATFP 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 279 NAKGEFTPGLYVRLKLVGSKTYAATLIKDEAVGTDLGKKFVLVLDGDNKTVYRTVEMGPKLEGLRIVRSGLSKGDRIVVN 358
Cdd:TIGR01730 229 NPDGRLLPGMFGRVTISLKVRSSAIVVPTQAVIEDLNGKYVYVVKNDGKVSKRPVEVGLRNGGYVEIESGLKAGDQIVTA 308
|
330
....*....|.
gi 15597689 359 GLQRVRPGMQV 369
Cdd:TIGR01730 309 GVVKLRDGAKV 319
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
46-357 |
9.88e-58 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 191.87 E-value: 9.88e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 46 EQPLNEWDEFTGRLEA-PESVELRPRVSGYIDRVAFHEGALVKKGDLLFQIDPRPFEAEVKRLEAQLQQARAAQARSVNE 124
Cdd:pfam00529 1 LAPLTKGVEAPGRVVVsGNAKAVQPQVSGIVTRVLVKEGDRVKAGDVLFQLDPTDYQAALDSAEAQLAKAQAQVARLQAE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 125 AQRGERLRASNAISAELADARTTAAQEAKAAVAATQAQLDAARLNLSFTRITAPIDGRVSRAEVTAGNLVNSGE-TLLTT 203
Cdd:pfam00529 81 LDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARRRVLAPIGGISRESLVTAGALVAQAQaNLLAT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 204 LVSTDKVYAYFDADERVFLKYVELARQAGRDTRSESPVYLGLSSEDG------NPHLGRLDFLDNQVNPRTGTIRGRAVF 277
Cdd:pfam00529 161 VAQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDLerteirAPVDGTVAFLSVTVDGGTVSAGLRLMF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 278 DN-AKGEFTPGLYVRLKLVGSKTYAATLIKDEAVGTDLGKKFVLVLDGDNKTVY-RTVEMGPKLEGLRIVRSGLSKGDRI 355
Cdd:pfam00529 241 VVpEDNLLVPGMFVETQLDQVRVGQPVLIPFDAFPQTKTGRFTGVVVGISPDTGpVRVVVDKAQGPYYPLRIGLSAGALV 320
|
..
gi 15597689 356 VV 357
Cdd:pfam00529 321 RL 322
|
|
| PRK15030 |
PRK15030 |
multidrug efflux RND transporter periplasmic adaptor subunit AcrA; |
13-403 |
1.09e-49 |
|
multidrug efflux RND transporter periplasmic adaptor subunit AcrA;
Pssm-ID: 184990 [Multi-domain] Cd Length: 397 Bit Score: 172.98 E-value: 1.09e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 13 LALAAVLVLSACGKAPETTQGMAAPKVSVAEVIEQPLNEWDEFTGRLEAPESVELRPRVSGYIDRVAFHEGALVKKGDLL 92
Cdd:PRK15030 14 LMLSGSLALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 93 FQIDPRPFEAEVKRLEAQLQQARAAQARSVNEAQRGERLRASNAISAELADARTTAAQEAKAAVAATQAQLDAARLNLSF 172
Cdd:PRK15030 94 YQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAY 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 173 TRITAPIDGRVSRAEVTAGNLVNSGE-TLLTTLVSTDKVYAYFDADERVFLKY-VELARQAGRDTRSESPVYLGLSSEDG 250
Cdd:PRK15030 174 TKVTSPISGRIGKSNVTEGALVQNGQaTALATVQQLDPIYVDVTQSSNDFLRLkQELANGTLKQENGKAKVSLITSDGIK 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 251 NPHLGRLDFLDNQVNPRTGTIRGRAVFDNAKGEFTPGLYVRLKLVGSKTYAATLIKDEAVG-TDLGKKFVLVLDGDNKTV 329
Cdd:PRK15030 254 FPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTrTPRGDATVLVVGADDKVE 333
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15597689 330 YRTVEMGPKLEGLRIVRSGLSKGDRIVVNGLQRVRPGMQVDPQKVemaSADTlatlarlRQSVGDSEPPKVAAS 403
Cdd:PRK15030 334 TRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQEV---TADN-------NQQAASGAQPEQSKS 397
|
|
| PRK09859 |
PRK09859 |
multidrug transporter subunit MdtE; |
12-368 |
7.99e-46 |
|
multidrug transporter subunit MdtE;
Pssm-ID: 137559 [Multi-domain] Cd Length: 385 Bit Score: 162.19 E-value: 7.99e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 12 PLaLAAVLVLSACGKAPETTQGMAAPKVSVAEVIEQPLNEWDEFTGRLEAPESVELRPRVSGYIDRVAFHEGALVKKGDL 91
Cdd:PRK09859 10 PL-LFCGAMLTACDDKSAENAAAMTPEVGVVTLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 92 LFQIDPRPFEAEVKRLEAQLQQARAAQARSVNEAQRGERLRASNAISAELADARTTAAQEAKAAVAATQAQLDAARLNLS 171
Cdd:PRK09859 89 LYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQ 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 172 FTRITAPIDGRVSRAEVTAGNLVNSGET-LLTTLVSTDKVYAYFDADERVFLKYV-ELARQAGRDTRSESPVYLGLSSED 249
Cdd:PRK09859 169 YANVTSPITGVSGKSSVTVGALVTANQAdSLVTVQRLDPIYVDLTQSVQDFLRMKeEVASGQIKQVQGSTPVQLNLENGK 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 250 GNPHLGRLDFLDNQVNPRTGTIRGRAVFDNAKGEFTPGLYVRLKLVGSKTYAATLIKDEAVGTDL-GKKFVLVLDGDNKT 328
Cdd:PRK09859 249 RYSQTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAqGKATALILDKDDVV 328
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 15597689 329 VYRTVEMGPKLEGLRIVRSGLSKGDRIVVNGLQRVRPGMQ 368
Cdd:PRK09859 329 QLREIEASKAIGDQWVVTSGLQAGDRVIVSGLQRIRPGIK 368
|
|
| PRK09578 |
PRK09578 |
MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit; |
12-380 |
2.22e-42 |
|
MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit;
Pssm-ID: 169982 [Multi-domain] Cd Length: 385 Bit Score: 153.03 E-value: 2.22e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 12 PLALAAVLVLSACGKAPETTQGMAAPKVSVAEVIEQPLNEWDEFTGRLEAPESVELRPRVSGYIDRVAFHEGALVKKGDL 91
Cdd:PRK09578 11 LAALVALFVLAGCGKGDSDAAAAAPREATVVTVRPTSVPMTVELPGRLDAYRQAEVRARVAGIVTARTYEEGQEVKQGAV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 92 LFQIDPRPFEAEVKRLEAQLQQARAAQARSVNEAQRGERLRASNAISAELADARTTAAQEAKAAVAATQAQLDAARLNLS 171
Cdd:PRK09578 91 LFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQAKAAVASAKAELARAQLQLD 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 172 FTRITAPIDGRVSRAEVTAGNLVNSGE-TLLTTLVSTDKVYAYFD---ADervflkyVELARQAGRDTR----SESPVYL 243
Cdd:PRK09578 171 YATVTAPIDGRARRALVTEGALVGQDQaTPLTTVEQLDPIYVNFSqpaAD-------VEALRRAVKSGRatgiAQQDVAV 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 244 GLSSEDGN--PHLGRLDFLDNQVNPRTGTIRGRAVFDNAKGEFTPGLYVRLKLVGSKTYAATLIKDEAVGTDLGKKFVLV 321
Cdd:PRK09578 244 TLVRADGSeyPLKGKLLFSDLAVDPTTDTVAMRALFPNPERELLPGAYVRIALDRAVNPRAILVPRDALLRTADSASVKV 323
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 15597689 322 LDGDNKTVYRTVEMGPKLEGLRIVRSGLSKGDRIVVNGLQRVRPGMQVDPQKVEMASAD 380
Cdd:PRK09578 324 VGQNGKVRDVEVEADQMSGRDWIVTRGLAGGERVIVDNAAQFAPGTAVKAVERAPAAKP 382
|
|
| PRK11556 |
PRK11556 |
MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit; |
33-391 |
3.41e-40 |
|
MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit;
Pssm-ID: 183194 [Multi-domain] Cd Length: 415 Bit Score: 148.01 E-value: 3.41e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 33 GMAAPKVSVAEVIEQPLNEWDEFTGRLEAPESVELRPRVSGYIDRVAFHEGALVKKGDLLFQIDPRPFEAEVKRLEAQLQ 112
Cdd:PRK11556 56 SGPLAPVQAATATEQAVPRYLTGLGTVTAANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLA 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 113 QARAAQARSVNEAQRGERLRASNAISAELADARTTAAQEAKAAVAATQAQLDAARLNLSFTRITAPIDGRVSRAEVTAGN 192
Cdd:PRK11556 136 KDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGN 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 193 LVNSGETL-LTTLVSTDKVYAYFDADERVfLKYVELARQAGRDTRSEspvylglSSEDGNPHL---GRLDFLDNQVNPRT 268
Cdd:PRK11556 216 QISSGDTTgIVVITQTHPIDLVFTLPESD-IATVVQAQKAGKPLVVE-------AWDRTNSKKlseGTLLSLDNQIDATT 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 269 GTIRGRAVFDNAKGEFTPGLYVRLKLVGSKTYAATLIKDEAVGTDLGKKFVLVLDGDNKTVYRTVEMGPKLEGLRIVRSG 348
Cdd:PRK11556 288 GTIKLKARFNNQDDALFPNQFVNARMLVDTLQNAVVIPTAALQMGNEGHFVWVLNDENKVSKHLVTPGIQDSQKVVISAG 367
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 15597689 349 LSKGDRIVVNGLQRVRPGMQVDpqKVEMASADTLATLARLRQS 391
Cdd:PRK11556 368 LSAGDRVVTDGIDRLTEGAKVE--VVEPQSATTPEEKATSREY 408
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
56-223 |
6.55e-20 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 89.72 E-value: 6.55e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 56 TGRLEApESVELRPRVSGYIDRVAFHEGALVKKGDLLFQIDPRPFEAEVKRLE--------------------------- 108
Cdd:COG1566 38 DGRVEA-RVVTVAAKVSGRVTEVLVKEGDRVKKGQVLARLDPTDLQAALAQAEaqlaaaeaqlarleaelgaeaeiaaae 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 109 AQLQQARAAQARSVNEAQRGERLRASNAIS---------------AELADARTTAAQEAKAAVAATQA------------ 161
Cdd:COG1566 117 AQLAAAQAQLDLAQRELERYQALYKKGAVSqqeldearaaldaaqAQLEAAQAQLAQAQAGLREEEELaaaqaqvaqaea 196
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15597689 162 QLDAARLNLSFTRITAPIDGRVSRAEVTAGNLVNSGETLLtTLVSTDKVY--AYFDADERVFLK 223
Cdd:COG1566 197 ALAQAELNLARTTIRAPVDGVVTNLNVEPGEVVSAGQPLL-TIVPLDDLWveAYVPETDLGRVK 259
|
|
| HlyD_D23 |
pfam16576 |
Barrel-sandwich domain of CusB or HlyD membrane-fusion; HlyD_D23 is the combined domains 2 and ... |
69-290 |
1.85e-10 |
|
Barrel-sandwich domain of CusB or HlyD membrane-fusion; HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.
Pssm-ID: 435440 [Multi-domain] Cd Length: 214 Bit Score: 60.21 E-value: 1.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 69 PRVSGYIDRVAFH-EGALVKKGDLLFQID-PRPFEAEVKRLEAQLQQARAAQARSVNEAQrgERLRA---SNAISAELAD 143
Cdd:pfam16576 24 ARVEGWIEKLYVNaTGDPVKKGQPLAELYsPELVAAQQEYLLALRSGDALSKSELLRAAR--QRLRLlgmPEAQIAELER 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 144 ARTTAAqeakaavaatqaqldaarlnlSFTrITAPIDGRVSRAEVTAGNLVNSGETLLtTLVSTDKVYAYFDADERvflk 223
Cdd:pfam16576 102 TGKVQP---------------------TVT-VYAPISGVVTELNVREGMYVQPGDTLF-TIADLSTVWVEADVPEQ---- 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15597689 224 yvELAR-QAGRDTRSESPVYLGLSSEdgnphlGRLDFLDNQVNPRTGTIRGRAVFDNAKGEFTPGLYV 290
Cdd:pfam16576 155 --DLALvKVGQPAEVTLPALPGKTFE------GKVDYIYPTLDPKTRTVRVRIELPNPDGRLKPGMFA 214
|
|
| PRK11578 |
PRK11578 |
macrolide transporter subunit MacA; Provisional |
56-194 |
5.98e-10 |
|
macrolide transporter subunit MacA; Provisional
Pssm-ID: 183211 [Multi-domain] Cd Length: 370 Bit Score: 60.56 E-value: 5.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 56 TGRLEAPESVELRPRVSGYIDRVAFHEGALVKKGDLLFQIDPRPFEAEVKRLEAQLQQARAAQARSVNEA-------QRG 128
Cdd:PRK11578 53 TGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELklarvtlSRQ 132
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15597689 129 ERLRASNAISAELADARTTAAQEAKAAVAATQAQ-------LDAARLNLSFTRITAPIDGRVSRAEVTAGNLV 194
Cdd:PRK11578 133 QRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQikrnqasLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTV 205
|
|
| PRK10476 |
PRK10476 |
multidrug transporter subunit MdtN; |
63-212 |
8.25e-10 |
|
multidrug transporter subunit MdtN;
Pssm-ID: 182488 [Multi-domain] Cd Length: 346 Bit Score: 60.04 E-value: 8.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 63 ESVELRPRVSGYIDRVAFHEGALVKKGDLLFQIDPRPFEAEV-----------------KRL-----------EAQLQQA 114
Cdd:PRK10476 47 DVVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPRPYELTVaqaqadlaladaqimttQRSvdaersnaasaNEQVERA 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 115 RAAQARSVNEAQRGERLRASNAISAE-LADART-----------------------TAAQEAKAAVAATQAQLDAARLNL 170
Cdd:PRK10476 127 RANAKLATRTLERLEPLLAKGYVSAQqVDQARTaqrdaevslnqallqaqaaaaavGGVDALVAQRAAREAALAIAELHL 206
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 15597689 171 SFTRITAPIDGRVSRAEVTAGNLVNSGETLLtTLVSTDKVYA 212
Cdd:PRK10476 207 EDTTVRAPFDGRVVGLKVSVGEFAAPMQPIF-TLIDTDHWYA 247
|
|
| PRK10559 |
PRK10559 |
p-hydroxybenzoic acid efflux pump subunit AaeA; |
65-215 |
1.03e-09 |
|
p-hydroxybenzoic acid efflux pump subunit AaeA;
Pssm-ID: 182548 [Multi-domain] Cd Length: 310 Bit Score: 59.37 E-value: 1.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 65 VELRPRVSGYIDRVAFHEGALVKKGDLLFQIDPRPFEAEVKRLEAQLQQARAAQARSVNEAQRGERLRASnAISAELADA 144
Cdd:PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQ-AMSREEIDQ 126
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15597689 145 RTTAAQEAKAAVAATQAQLDAARLNLSFTRITAPIDGRVSRAEVTAGNLVNSGETLLtTLVSTDKVY--AYFD 215
Cdd:PRK10559 127 ANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAV-ALVKQNSFYvlAYME 198
|
|
| Biotin_lipoyl_2 |
pfam13533 |
Biotin-lipoyl like; |
63-108 |
2.86e-08 |
|
Biotin-lipoyl like;
Pssm-ID: 433286 Cd Length: 50 Bit Score: 49.75 E-value: 2.86e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 15597689 63 ESVELRPRVSGYIDRVAFHEGALVKKGDLLFQIDPRPFEAEVKRLE 108
Cdd:pfam13533 1 PVVKIASPVSGKVVAVNVKEGQQVKKGDVLATLDSPELQLQLQQAE 46
|
|
| PRK09783 |
PRK09783 |
copper/silver efflux system membrane fusion protein CusB; Provisional |
28-360 |
6.60e-07 |
|
copper/silver efflux system membrane fusion protein CusB; Provisional
Pssm-ID: 236625 [Multi-domain] Cd Length: 409 Bit Score: 51.02 E-value: 6.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 28 PETTQGMAapkVSVAEVIEQPLNEWDEFTGRLEAPES--VELRPRVSGYIDRV-AFHEGALVKKGDLLFQID-PRPFEAE 103
Cdd:PRK09783 88 PTQTQNLG---VKTATVTRGPLTFAQTFPANVSYNEYqyAIVQARAAGFIDKVyPLTVGDKVQKGTPLLDLTiPDWVEAQ 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 104 VKRLEAQLQQARAAQARSVNEaqrgeRLRASNAISAELADARTTAaqeakaavaatqaqldaaRLNLSFTrITAPIDGRV 183
Cdd:PRK09783 165 SEYLLLRETGGTATQTEGILE-----RLRLAGMPEADIRRLIATR------------------KIQTRFT-LKAPIDGVI 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 184 SRAEVTAGnlVNsgetllttlVSTDKVYAYFDADERVFLKYV---ELARQAGRDTRSE--SPVYlglssEDGNPHLGRLD 258
Cdd:PRK09783 221 TAFDLRAG--MN---------IAKDNVVAKIQGMDPVWVTAAipeSIAWLVKDASQFTltVPAR-----PDKTFTIRKWT 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 259 FLDNqVNPRTGTIRGRAVFDNAKGEFTPGLYVRLKLvGSKTYAATLIKDEAVgTDLGK-KFVLVLDGDNKTVYRTVEMGP 337
Cdd:PRK09783 285 LLPS-VDAATRTLQLRLEVDNADEALKPGMNAWLQL-NTASEPMLLIPSQAL-IDTGSeQRVITVDADGRFVPKRVAVFQ 361
|
330 340
....*....|....*....|...
gi 15597689 338 KLEGLRIVRSGLSKGDRIVVNGL 360
Cdd:PRK09783 362 ESQGVTAIRSGLAEGEKVVSSGL 384
|
|
| PRK03598 |
PRK03598 |
putative efflux pump membrane fusion protein; Provisional |
64-215 |
3.52e-06 |
|
putative efflux pump membrane fusion protein; Provisional
Pssm-ID: 235136 [Multi-domain] Cd Length: 331 Bit Score: 48.42 E-value: 3.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 64 SVELRPRVSGYIDRVAFHEGALVKKGDLLFQIDPRPF-------EAEV--------KRLEAQLQQARAAQARSVNEAQ-- 126
Cdd:PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAAPYenalmqaKANVsvaqaqldLMLAGYRDEEIAQARAAVKQAQaa 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 127 ---------RGERLRASNAISA-ELADARTTAAQEAKAAV-------------------------AATQAQLDAARLNLS 171
Cdd:PRK03598 123 ydyaqnfynRQQGLWKSRTISAnDLENARSSRDQAQATLKsaqdklsqyregnrpqdiaqakaslAQAQAALAQAELNLQ 202
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 15597689 172 FTRITAPIDGRV-SRAeVTAGNLVNSGETLLtTLVSTDKVY--AYFD 215
Cdd:PRK03598 203 DTELIAPSDGTIlTRA-VEPGTMLNAGSTVF-TLSLTRPVWvrAYVD 247
|
|
| HlyD_3 |
pfam13437 |
HlyD family secretion protein; This is a family of largely bacterial haemolysin translocator ... |
174-287 |
1.00e-04 |
|
HlyD family secretion protein; This is a family of largely bacterial haemolysin translocator HlyD proteins.
Pssm-ID: 433206 [Multi-domain] Cd Length: 104 Bit Score: 41.19 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 174 RITAPIDGRVSRAEVTAGNLVNSGETLLtTLVSTD--KVYAYFDADERVFLKyvelarqagrdtrSESPVYLGLSSEDGN 251
Cdd:pfam13437 1 TIRAPVDGVVAELNVEEGQVVQAGDPLA-TIVPPDrlLVEAFVPAADLGSLK-------------KGQKVTLKLDPGSDY 66
|
90 100 110
....*....|....*....|....*....|....*...
gi 15597689 252 PHLGRLDFLDNQVNPRTGTIRGRAVFDNAKGE--FTPG 287
Cdd:pfam13437 67 TLEGKVVRISPTVDPDTGVIPVRVSIENPKTPipLLPG 104
|
|
| PRK15136 |
PRK15136 |
multidrug efflux MFS transporter periplasmic adaptor subunit EmrA; |
65-201 |
7.13e-04 |
|
multidrug efflux MFS transporter periplasmic adaptor subunit EmrA;
Pssm-ID: 185090 [Multi-domain] Cd Length: 390 Bit Score: 41.60 E-value: 7.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 65 VELRPRVSGYIDRVAFHEGALVKKGDLLFQIDPR----PFE-----------------AEVKRLEAQLQQARAAQARSVN 123
Cdd:PRK15136 62 VQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTdaeqAFEkaktalansvrqthqlmINSKQYQANIELQKTALAQAQS 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597689 124 EAQRGERLRASNAISAE-LADARTTAAQEAKaavaatqaQLDAAR--------------------------------LNL 170
Cdd:PRK15136 142 DLNRRVPLGNANLIGREeLQHARDAVASAQA--------QLDVAIqqynanqamilntpledqpavqqaatevrnawLAL 213
|
170 180 190
....*....|....*....|....*....|.
gi 15597689 171 SFTRITAPIDGRVSRAEVTAGNLVNSGETLL 201
Cdd:PRK15136 214 QRTKIVSPMTGYVSRRSVQVGAQISPTTPLM 244
|
|
| |
