|
Name |
Accession |
Description |
Interval |
E-value |
| TamA |
COG0729 |
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ... |
12-579 |
0e+00 |
|
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440493 [Multi-domain] Cd Length: 574 Bit Score: 609.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 12 LAGLLCLSTAAFAESQLSVRVTPANAALKANIEAYVGSLGERDE-----AALQRFRRNAEAQAEKAAQALGYFQAQIDSE 86
Cdd:COG0729 2 LLLLALLLAAPAAAAPYEVEIDGLDGELRDNLRAHLSLLRLRDEpdldpAELRRLARADPERIRAALRAEGYYSPTVTIR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 87 VK-DGKPPKLTLKVVPGEPVRLRQVNIQVLGEAASLESFR-LPSGKQLKPGAKLNQGVYEDAKRLIQNQASRYGFFQGRF 164
Cdd:COG0729 82 LDgRDGPWTVTITVDPGPPVRIGKVDIELLGEAAQDPARRkLLAAWPLKPGDPLRHGAYEAAKSALLDALRERGYPDARF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 165 STQRLSIDPRAGIADIDLVYDSGQRYTFGKVSFDGDSIIEEELLRRMVPFKAGQPYDSELIAELNQNLQSSGYFEGVRVD 244
Cdd:COG0729 162 TQSRAEVDPATNTADVTLTVDSGPRYRFGEITVEGLSRVPEDFLRRLAPFKPGEPYSPDKLLELQQRLQSTGYFSSVRVT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 245 AAPTQAQADgarqAIPVAVRLEARKPRTMGVGLGFSTDVGARARFNWTRHWVNAEGHSLGFESEISAPRQNVGAWYEIPL 324
Cdd:COG0729 242 PDEDPAPDG----TVPVTVTLTERKRRRIGFGLGYSTDTGPRLSAGWEHRNLFGRGHRLRLELELSQPEQSLSADYRIPP 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 325 DPPLTDKLRFTSGYQFEDLVDTESKLLTLGGEWHSKRPDGWQRVVSLNWMREEYKLGDDSGLSSFLMPGIGYSLLETDNK 404
Cdd:COG0729 318 LFPLGQYLSLGAGLEREDTDDYDSRSLTLGAGRTRRLSDGWTRSLGLRLLYERFTDGDDDRTYTLLSPGLSWTRDRRDDP 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 405 VDPSHGYRLQFNVKGAKEGLLADADVLHVDAMAKGLTSFAGGHRLLGRLQVGGIATNDYKSIPPSLRFFAGGDQSVRGYD 484
Cdd:COG0729 398 LDPTRGYRLSLELGPGSKLLGSDTSFLRLYARGSWYRPLGERHRLAGRAELGAILGADFDDVPPSLRFFAGGDGSVRGYG 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 485 YRTLSPENSDGDKIGGRYMIAGSVEYQYPLAERWRLATFVDQGNAFNSLDFPSIKTGVGFGVRWVSPVGPLRLDLAHALD 564
Cdd:COG0729 478 YQSLGPRDGDGDVIGGRSLAVGSLEYRYRVTENWGLAVFVDAGNAFNDFPFSDLKVGAGLGLRWYSPVGPIRLDLAYPLN 557
|
570
....*....|....*..
gi 15597739 565 D--DGGFRLHFSMGPEL 579
Cdd:COG0729 558 DrdDSSFRLYISLGQAF 574
|
|
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
52-576 |
1.58e-40 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 156.97 E-value: 1.58e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 52 ERDEAALQRFRRNAeaqaekaaqalGYFQAQIDSEVKDGKPPK----LTLKVVPGEPVRLRQVNIQ--VLGEAASLESFr 125
Cdd:TIGR03303 195 EADLELLRSFYLNR-----------GYLDFKVESTQVSITPDKkgvyITYNIKEGEQYKFGEVTIEgdLIGPDEELKKL- 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 126 lpsgKQLKPGAKLNQGVYEDAKRLIQNQASRYGFFqgrF--STQRLSIDPRAGIADIDLVYDSGQRYTFGKVSFDGDSII 203
Cdd:TIGR03303 263 ----LKIKKGEVFNRSKVTKIVKAIKDLLGEKGYA---FanVNPRPQINDENKTVDLTFKVDPGKRVYVRRINISGNTRT 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 204 EEELLRRMVPFKAGQPYDSELIAELNQNLQSSGYFEGVRVDAAPTQA--QADgarqaipVAVRLEARKPRTMGVGLGFST 281
Cdd:TIGR03303 336 RDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPVGSpdQVD-------LNVKVKEQPTGSISFGVGYGS 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 282 DVGARARFNWTRHWVNAEGHSLGFESEISAPRQNVGAWYeipLDPPLTDKLR------FTSGYQFEDLVDTESKLLTLGG 355
Cdd:TIGR03303 409 SSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSF---TDPYFTDDGVslgfsiFYSETDRNYKNFSDYKTKTYGG 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 356 EWHSKRP-DGWQRV-VSLNWMREEYKLGDDSGLS--------------SFLMPGIGYSllETDNKVDPSHGYRLQFNVKG 419
Cdd:TIGR03303 486 SINLGYPiTEYLRVsLGYGYEQNKIKDDSDSDSSasyfikeqggkfidSSLSYGWSYD--TLDSGYFPTKGSIQRLSQEF 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 420 AkeGLLADADVLHVDAMAKGLTSFAGGHR--LLGRLQVGGIATNDYKSIPPSLRFFAGGDQSVRGYDYRTLSPE--NSDG 495
Cdd:TIGR03303 564 A--GPGGDLKYYKLTYDSEYYIPLSKEDDwvLSLRGRLGYGNGYGGKDLPFYERFYAGGIGSVRGFESNGIGPRdiNDSG 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 496 DKIGGRYMIAGSVEYQYPLA---ERW--RLATFVDQGNAFN--------SLDFPSIKTGVGFGVRWVSPVGPLRLDLAHA 562
Cdd:TIGR03303 642 DSIGGNAMATANVELIFPLPflpEDNglRGSVFFDAGNVWGtdqkkegdYSDDSSLRASVGVGLRWISPMGPLRFSYAKP 721
|
570
....*....|....*..
gi 15597739 563 LDDDGGFRLH---FSMG 576
Cdd:TIGR03303 722 LKKKKGDKTQsfqFSIG 738
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
379-575 |
4.49e-30 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 120.54 E-value: 4.49e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 379 KLGDDSGLSSFLMPGIGYSLLetDNKVDPSHGYRLQFNVKGAKEGLLADADVLHVDAMAKGLTSFAGGHR--LLGRLQVG 456
Cdd:pfam01103 105 ASGTGKSLTFSLSYGWTYDTR--DDGLFPTRGSYLKFNLEFTGPFLGGDVSYYKLTADGSYYYPLGKDDSfvLSARVALG 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 457 GIATNDYKSIPPSLRFFAGGDQSVRGYDYRTLSPENSDGDKIGGRYMIAGSVEYQYPL----AERWRLATFVDQGNAFNS 532
Cdd:pfam01103 183 YLDGYGTKDLPFYERFYAGGSNSVRGFEYGGIGPRDEDGDALGGNSYVVASLELRFPLpfvpKQSVRGVLFFDAGNVWNT 262
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 15597739 533 -----------LDFPSIKTGVGFGVRWVSPVGPLRLDLAHAL---DDDGGFRLHFSM 575
Cdd:pfam01103 263 gstdpgssrgaRSKAGIRASVGVGLRWLSPLGPLRFDYAFPLkkpDGDETQRFQFGI 319
|
|
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
77-560 |
5.52e-14 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 75.09 E-value: 5.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 77 GYFQAQIDS-EVK---DGKPPKLTLKVVPGEPVRLRQVNIQ--VLGEAASLESFRLPSGKQLKPGAKLNQgVYEDAKRLI 150
Cdd:PRK11067 234 GYARFNIDStQVSltpDKKGIYITVNITEGDQYKLSGVQVSgnLAGHSAEIEKLTKIEPGELYNGTKVTK-MEDDIKKLL 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 151 qnqaSRYGFFQGRFSTQRlSIDPRAGIADIDLVYDSGQRYTFGKVSFDGDSIIEEELLRRMVPFKAGQPYDSELIAELNQ 230
Cdd:PRK11067 313 ----GRYGYAYPRVQTQP-EINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 231 NLQSSGYFEGVRVDAAPTQAQADgarqAIPVAVRLEARKPRTMGVGLGFSTDVGAR------------------------ 286
Cdd:PRK11067 388 RLNRLGFFETVDVDTQRVPGSPD----QVDVVYKVKERNTGSFNFGVGYGTESGVSfqagvqqdnwlgtgnsvgingtkn 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 287 -----ARFNWTRHWVNAEGHSLG---FESEISAPRQNVGAW----YEI------PLDPplTDKLRFTSGYQFEDLVDTES 348
Cdd:PRK11067 464 dyqtyAELSVTDPYFTVDGVSLGgriFYNDFEADDADLSDYtnksYGTdvtlgfPINE--NNSLRAGLGYVHNSLSNMQP 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 349 KLLTlggewhskrpdgWQrvvSLNWMREEYKLGDDSGLSS---FLMPGIGYSLLetDNKVDPSHGYRLQFNVKGAKEGll 425
Cdd:PRK11067 542 QVAM------------WR---YLYSMGENPSSDSDNSFKTddfTFNYGWTYNNL--DRGYFPTAGNRVNLTGKVTIPG-- 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 426 ADADVLHVDAMAKGLTSFAGGHR--LLGRLQVG---GIATndyKSIPPSLRFFAGGDQSVRG------------YDYRTL 488
Cdd:PRK11067 603 SDNEYYKVTLDTAQYVPLDDDHKwvLLGRGRLGygdGLGG---KEMPFYENFYAGGSSTVRGfqsntigpkavyYPGQAS 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 489 SPENSDG-------DKIGGRYMIAGSVEYQYP---LAERW----RLATFVDQGNAFNS-------------LDF--PS-I 538
Cdd:PRK11067 680 NYTQDGAkdlcksdDAVGGNAMAVASLELITPtpfISDKYansvRTSFFWDMGTVWDTnwdntaytraagyPDYsdPSnI 759
|
570 580
....*....|....*....|..
gi 15597739 539 KTGVGFGVRWVSPVGPLRLDLA 560
Cdd:PRK11067 760 RMSAGIALQWMSPLGPLVFSYA 781
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TamA |
COG0729 |
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ... |
12-579 |
0e+00 |
|
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440493 [Multi-domain] Cd Length: 574 Bit Score: 609.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 12 LAGLLCLSTAAFAESQLSVRVTPANAALKANIEAYVGSLGERDE-----AALQRFRRNAEAQAEKAAQALGYFQAQIDSE 86
Cdd:COG0729 2 LLLLALLLAAPAAAAPYEVEIDGLDGELRDNLRAHLSLLRLRDEpdldpAELRRLARADPERIRAALRAEGYYSPTVTIR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 87 VK-DGKPPKLTLKVVPGEPVRLRQVNIQVLGEAASLESFR-LPSGKQLKPGAKLNQGVYEDAKRLIQNQASRYGFFQGRF 164
Cdd:COG0729 82 LDgRDGPWTVTITVDPGPPVRIGKVDIELLGEAAQDPARRkLLAAWPLKPGDPLRHGAYEAAKSALLDALRERGYPDARF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 165 STQRLSIDPRAGIADIDLVYDSGQRYTFGKVSFDGDSIIEEELLRRMVPFKAGQPYDSELIAELNQNLQSSGYFEGVRVD 244
Cdd:COG0729 162 TQSRAEVDPATNTADVTLTVDSGPRYRFGEITVEGLSRVPEDFLRRLAPFKPGEPYSPDKLLELQQRLQSTGYFSSVRVT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 245 AAPTQAQADgarqAIPVAVRLEARKPRTMGVGLGFSTDVGARARFNWTRHWVNAEGHSLGFESEISAPRQNVGAWYEIPL 324
Cdd:COG0729 242 PDEDPAPDG----TVPVTVTLTERKRRRIGFGLGYSTDTGPRLSAGWEHRNLFGRGHRLRLELELSQPEQSLSADYRIPP 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 325 DPPLTDKLRFTSGYQFEDLVDTESKLLTLGGEWHSKRPDGWQRVVSLNWMREEYKLGDDSGLSSFLMPGIGYSLLETDNK 404
Cdd:COG0729 318 LFPLGQYLSLGAGLEREDTDDYDSRSLTLGAGRTRRLSDGWTRSLGLRLLYERFTDGDDDRTYTLLSPGLSWTRDRRDDP 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 405 VDPSHGYRLQFNVKGAKEGLLADADVLHVDAMAKGLTSFAGGHRLLGRLQVGGIATNDYKSIPPSLRFFAGGDQSVRGYD 484
Cdd:COG0729 398 LDPTRGYRLSLELGPGSKLLGSDTSFLRLYARGSWYRPLGERHRLAGRAELGAILGADFDDVPPSLRFFAGGDGSVRGYG 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 485 YRTLSPENSDGDKIGGRYMIAGSVEYQYPLAERWRLATFVDQGNAFNSLDFPSIKTGVGFGVRWVSPVGPLRLDLAHALD 564
Cdd:COG0729 478 YQSLGPRDGDGDVIGGRSLAVGSLEYRYRVTENWGLAVFVDAGNAFNDFPFSDLKVGAGLGLRWYSPVGPIRLDLAYPLN 557
|
570
....*....|....*..
gi 15597739 565 D--DGGFRLHFSMGPEL 579
Cdd:COG0729 558 DrdDSSFRLYISLGQAF 574
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
52-576 |
8.59e-79 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 262.72 E-value: 8.59e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 52 ERDEAALQRFRRNAeaqaekaaqalGYFQAQIDSEV----KDGKPPKLTLKVVPGEPVRLRQVNIQvlGEAASLESFRlp 127
Cdd:COG4775 186 EADLERLRSFYLNR-----------GYLDARVDSTQvelsPDKKDIYITINIEEGEQYKVGDIKFE--GNLVDEEELR-- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 128 SGKQLKPGAKLNQGVYEDAKRLIQNQASRYGFFQGRFSTqRLSIDPRAGIADIDLVYDSGQRYTFGKVSFDGDSIIEEEL 207
Cdd:COG4775 251 KLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEP-VPEIDPENDTVDLTFRIDEGPRVYVDRIEIEGNTRTRDEV 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 208 LRRMVPFKAGQPYDSELIAELNQNLQSSGYFEGVRVDAAPTQAQADGarqaIPVAVRLEARKPRTMGVGLGFSTDVGARA 287
Cdd:COG4775 330 IRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQ----VDLVVDVKEKPTGSLSLGAGYSSDDGFIG 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 288 RFNWTRHWVNAEGHSLGFESEISAPRQNVGAWYEIP--LDPPLTdkLRFTSGYQFEDLVDTES-KLLTLGGEWH-SKRPD 363
Cdd:COG4775 406 GASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPyfFGSPLS--LGVSLFYRRRDASDYSSyDLKRTGGGLGlGYPLS 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 364 GWQRV-VSLNWMREEYK--------LGDDSGLSSFLMPGIGYSLLETDNKVDPSHGYRLQFNVKGAKEGLLADADVLHVD 434
Cdd:COG4775 484 EDLRLsLGYGYERTDISdvdsspdyLPDQNGSSNTSSLGLGLTYDTRDNPLFPTRGSYLSLSLEFAGPYLGGDLEYYKLS 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 435 AMAKGLTSFAGGHRLLGRLQVGGIATNDyKSIPPSLRFFAGGDQSVRGYDYRTLSPensdgdKIGGRYMIAGSVEYQYPL 514
Cdd:COG4775 564 ADARYYFPLGKKLVLALRAEAGYLGGYG-KDLPFFERFYLGGFGSLRGYEENSLGP------RLGGNAYLLGSAELRFPL 636
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15597739 515 ----AERWRLATFVDQGNAFN---SLDFPSIKTGVGFGVRWVSPVGPLRLDLAHALD---DDGGFRLHFSMG 576
Cdd:COG4775 637 plppSAGLRGALFVDAGNVWDsgdDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDkepGDSGQRFHFSIG 708
|
|
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
52-576 |
1.58e-40 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 156.97 E-value: 1.58e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 52 ERDEAALQRFRRNAeaqaekaaqalGYFQAQIDSEVKDGKPPK----LTLKVVPGEPVRLRQVNIQ--VLGEAASLESFr 125
Cdd:TIGR03303 195 EADLELLRSFYLNR-----------GYLDFKVESTQVSITPDKkgvyITYNIKEGEQYKFGEVTIEgdLIGPDEELKKL- 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 126 lpsgKQLKPGAKLNQGVYEDAKRLIQNQASRYGFFqgrF--STQRLSIDPRAGIADIDLVYDSGQRYTFGKVSFDGDSII 203
Cdd:TIGR03303 263 ----LKIKKGEVFNRSKVTKIVKAIKDLLGEKGYA---FanVNPRPQINDENKTVDLTFKVDPGKRVYVRRINISGNTRT 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 204 EEELLRRMVPFKAGQPYDSELIAELNQNLQSSGYFEGVRVDAAPTQA--QADgarqaipVAVRLEARKPRTMGVGLGFST 281
Cdd:TIGR03303 336 RDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPVGSpdQVD-------LNVKVKEQPTGSISFGVGYGS 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 282 DVGARARFNWTRHWVNAEGHSLGFESEISAPRQNVGAWYeipLDPPLTDKLR------FTSGYQFEDLVDTESKLLTLGG 355
Cdd:TIGR03303 409 SSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSF---TDPYFTDDGVslgfsiFYSETDRNYKNFSDYKTKTYGG 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 356 EWHSKRP-DGWQRV-VSLNWMREEYKLGDDSGLS--------------SFLMPGIGYSllETDNKVDPSHGYRLQFNVKG 419
Cdd:TIGR03303 486 SINLGYPiTEYLRVsLGYGYEQNKIKDDSDSDSSasyfikeqggkfidSSLSYGWSYD--TLDSGYFPTKGSIQRLSQEF 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 420 AkeGLLADADVLHVDAMAKGLTSFAGGHR--LLGRLQVGGIATNDYKSIPPSLRFFAGGDQSVRGYDYRTLSPE--NSDG 495
Cdd:TIGR03303 564 A--GPGGDLKYYKLTYDSEYYIPLSKEDDwvLSLRGRLGYGNGYGGKDLPFYERFYAGGIGSVRGFESNGIGPRdiNDSG 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 496 DKIGGRYMIAGSVEYQYPLA---ERW--RLATFVDQGNAFN--------SLDFPSIKTGVGFGVRWVSPVGPLRLDLAHA 562
Cdd:TIGR03303 642 DSIGGNAMATANVELIFPLPflpEDNglRGSVFFDAGNVWGtdqkkegdYSDDSSLRASVGVGLRWISPMGPLRFSYAKP 721
|
570
....*....|....*..
gi 15597739 563 LDDDGGFRLH---FSMG 576
Cdd:TIGR03303 722 LKKKKGDKTQsfqFSIG 738
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
379-575 |
4.49e-30 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 120.54 E-value: 4.49e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 379 KLGDDSGLSSFLMPGIGYSLLetDNKVDPSHGYRLQFNVKGAKEGLLADADVLHVDAMAKGLTSFAGGHR--LLGRLQVG 456
Cdd:pfam01103 105 ASGTGKSLTFSLSYGWTYDTR--DDGLFPTRGSYLKFNLEFTGPFLGGDVSYYKLTADGSYYYPLGKDDSfvLSARVALG 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 457 GIATNDYKSIPPSLRFFAGGDQSVRGYDYRTLSPENSDGDKIGGRYMIAGSVEYQYPL----AERWRLATFVDQGNAFNS 532
Cdd:pfam01103 183 YLDGYGTKDLPFYERFYAGGSNSVRGFEYGGIGPRDEDGDALGGNSYVVASLELRFPLpfvpKQSVRGVLFFDAGNVWNT 262
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 15597739 533 -----------LDFPSIKTGVGFGVRWVSPVGPLRLDLAHAL---DDDGGFRLHFSM 575
Cdd:pfam01103 263 gstdpgssrgaRSKAGIRASVGVGLRWLSPLGPLRFDYAFPLkkpDGDETQRFQFGI 319
|
|
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
77-560 |
5.52e-14 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 75.09 E-value: 5.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 77 GYFQAQIDS-EVK---DGKPPKLTLKVVPGEPVRLRQVNIQ--VLGEAASLESFRLPSGKQLKPGAKLNQgVYEDAKRLI 150
Cdd:PRK11067 234 GYARFNIDStQVSltpDKKGIYITVNITEGDQYKLSGVQVSgnLAGHSAEIEKLTKIEPGELYNGTKVTK-MEDDIKKLL 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 151 qnqaSRYGFFQGRFSTQRlSIDPRAGIADIDLVYDSGQRYTFGKVSFDGDSIIEEELLRRMVPFKAGQPYDSELIAELNQ 230
Cdd:PRK11067 313 ----GRYGYAYPRVQTQP-EINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 231 NLQSSGYFEGVRVDAAPTQAQADgarqAIPVAVRLEARKPRTMGVGLGFSTDVGAR------------------------ 286
Cdd:PRK11067 388 RLNRLGFFETVDVDTQRVPGSPD----QVDVVYKVKERNTGSFNFGVGYGTESGVSfqagvqqdnwlgtgnsvgingtkn 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 287 -----ARFNWTRHWVNAEGHSLG---FESEISAPRQNVGAW----YEI------PLDPplTDKLRFTSGYQFEDLVDTES 348
Cdd:PRK11067 464 dyqtyAELSVTDPYFTVDGVSLGgriFYNDFEADDADLSDYtnksYGTdvtlgfPINE--NNSLRAGLGYVHNSLSNMQP 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 349 KLLTlggewhskrpdgWQrvvSLNWMREEYKLGDDSGLSS---FLMPGIGYSLLetDNKVDPSHGYRLQFNVKGAKEGll 425
Cdd:PRK11067 542 QVAM------------WR---YLYSMGENPSSDSDNSFKTddfTFNYGWTYNNL--DRGYFPTAGNRVNLTGKVTIPG-- 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 426 ADADVLHVDAMAKGLTSFAGGHR--LLGRLQVG---GIATndyKSIPPSLRFFAGGDQSVRG------------YDYRTL 488
Cdd:PRK11067 603 SDNEYYKVTLDTAQYVPLDDDHKwvLLGRGRLGygdGLGG---KEMPFYENFYAGGSSTVRGfqsntigpkavyYPGQAS 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 489 SPENSDG-------DKIGGRYMIAGSVEYQYP---LAERW----RLATFVDQGNAFNS-------------LDF--PS-I 538
Cdd:PRK11067 680 NYTQDGAkdlcksdDAVGGNAMAVASLELITPtpfISDKYansvRTSFFWDMGTVWDTnwdntaytraagyPDYsdPSnI 759
|
570 580
....*....|....*....|..
gi 15597739 539 KTGVGFGVRWVSPVGPLRLDLA 560
Cdd:PRK11067 760 RMSAGIALQWMSPLGPLVFSYA 781
|
|
| POTRA_TamA_1 |
pfam17243 |
POTRA domain TamA domain 1; This family represents the POTRA domain found in the membrane ... |
29-101 |
1.01e-12 |
|
POTRA domain TamA domain 1; This family represents the POTRA domain found in the membrane insertase TamA.
Pssm-ID: 435807 [Multi-domain] Cd Length: 74 Bit Score: 63.39 E-value: 1.01e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15597739 29 SVRVTPANAALKANIEAYVGSLGERDEAALQRFRRNAEAQAEKAAQALGYFQAQIDSEVK-DGKPPKLTLKVVP 101
Cdd:pfam17243 1 EVEIKGVDGELLDNVRAYLSLLPERDDDGSERLHRQAEEQIRKALQALGYYQPTIEFELEeDDGCWTLTLTVDP 74
|
|
| FhaC |
COG2831 |
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular ... |
193-576 |
3.63e-11 |
|
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442079 [Multi-domain] Cd Length: 547 Bit Score: 65.74 E-value: 3.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 193 GKVSFDGDSIIEEELLRRMVPFKAGQPYDselIAELNQNLQSSGYFEGVRVDAAPTQAQADGArqaipVAVRLEARKPRT 272
Cdd:COG2831 142 GRIRVEGNSRLSRAYLRSALPLAEGKPLN---LRDLEQGLLLLNRLPGVQVTAELRPGTEPGT-----SDLVVTVEEAKP 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 273 MGVGLGF----STDVGaRARFNWTRHWVNA--EGHSLGFESEISAPR---QNVGAWYEIPLDPpltDKLRFTSGYqfedl 343
Cdd:COG2831 214 FRGSLGLdnsgSPSTG-RYRLGASLSLDNLlgLGDQLSLSYSRSLDGdgsRSYSLSYSVPLGY---WGLTLGLSY----- 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 344 VDTESKLLTLGGEWHSKrpdGWQRVVSLNWMR---------------------EEYKLGDDSGLS----SFLMPGIGYSL 398
Cdd:COG2831 285 SRYRSRVGGPFGTLDIS---GKSQTYGLRLSYplirsrdqklslslgldykdsRNYLLGTEIEVQrrrlSVLRLGLSYTR 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 399 LETDNKVDPSHGYRLQFNVKGAK----EGLLADADVLHVDAMAKGLTSFAGGHRLLGRLQvgGIATNDykSIPPSLRFFA 474
Cdd:COG2831 362 RLGGGVLSLSLSFSQGLDWLGATpapdASRGPDGRFTKLRLSASRVQPLPQDFSLLLRLD--GQYSSD--PLLSSEQFSL 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 475 GGDQSVRGYDYRTLSpensdGDKiGgrymIAGSVEYQYPLAE-----RWRLATFVDQGNAFNSLDFPSIK-----TGVGF 544
Cdd:COG2831 438 GGRYSVRGYDEGELS-----GDN-G----WYLSNELRWPLPRlsllgGLQLYAFLDAGRVWNNSALPGQLngrtlAGAGL 507
|
410 420 430
....*....|....*....|....*....|....*...
gi 15597739 545 GVRWvSPVGPL--RLDLAHALDDDGG----FRLHFSMG 576
Cdd:COG2831 508 GLRL-SLGKNLslDLDYARPLGDPDGdtdnRRLYFSLS 544
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
191-268 |
9.20e-08 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 49.65 E-value: 9.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 191 TFGKVSFDGDSIIEEELLRRMVPFKAGQPYDSELIAE----LNQNLQSSGYFEgVRVdaaPTQAQADGARQAIPVAVRLE 266
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEdkeaLKDRYGRLGYFD-ASV---STNVEIDDEVNTVDLTFNVD 76
|
..
gi 15597739 267 AR 268
Cdd:pfam07244 77 EG 78
|
|
| 3a0901s03IAP75 |
TIGR00992 |
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved ... |
466-576 |
1.45e-04 |
|
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130065 [Multi-domain] Cd Length: 718 Bit Score: 44.95 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 466 IPPSLRFFAGGDQSVRGYDyrtlspensDGDKIGGRYMIAGSVEYQYPLAERwRLATFVDQGNAFNSLD----FPSI--- 538
Cdd:TIGR00992 609 LPSYDAFILGGPYSVRGYN---------MGELGAARNIFEATAEIRIPIKAT-HVYAFVEHGSDLGSSKdvkgNPTIvyr 678
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 15597739 539 ----KTGVGFGVRWVSPVGPLRLDLahaldDDGGFRLHFSMG 576
Cdd:TIGR00992 679 rpgqGSSYGAGVKLGLVRAEYAVDH-----NEGTGAIFFRFG 715
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
192-245 |
1.71e-04 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 44.70 E-value: 1.71e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 15597739 192 FGKVSFDGDSIIEEELLRRMVPFKAGQPYDSELIAELNQNLQSSGYFEGVRVDA 245
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIER 54
|
|
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
194-244 |
1.17e-03 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 41.80 E-value: 1.17e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 15597739 194 KVSFDGDSIIEEELLRRMVPFKAGQPYDSELIAELNQNLQSSGYFEGVRVD 244
Cdd:TIGR03303 5 DIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIE 55
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
131-187 |
1.81e-03 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 37.32 E-value: 1.81e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 15597739 131 QLKPGAKLNQGVYEDAKRLIQNQASRYGFFQGRFSTQrLSIDPRAGIADIDLVYDSG 187
Cdd:pfam07244 23 GLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTN-VEIDDEVNTVDLTFNVDEG 78
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
132-253 |
4.92e-03 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 39.69 E-value: 4.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597739 132 LKPGAKLNQG-VYEDAKRLiqnqasrygFFQGRFSTQRLSIDpragiaDIDLVYDSGQRYTFGKVSFDGDSIIEEELLRR 210
Cdd:COG4775 23 LRVGDTFDDEkLDEAIKAL---------YATGLFSDVRIERE------GVVLVVKVKERPTINSIEFEGNKKIKDEDLKK 87
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 15597739 211 MVPFKAGQPYDSELIAELNQNLQ----SSGYFeGVRVDAAPTQAQAD 253
Cdd:COG4775 88 ELGLKEGRVFDRALLERAEQELKeqyrSKGYY-NAKVTITPERNRVD 133
|
|
| |
