|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11278 |
PRK11278 |
NADH-quinone oxidoreductase subunit NuoF; |
8-440 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 236891 [Multi-domain] Cd Length: 448 Bit Score: 950.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 8 PANRMARSAETHPLTWRLREDAQPVWLEEYQSKDGYAAARKALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKD 87
Cdd:PRK11278 1 PMKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGMSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 88 ESLNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKN 167
Cdd:PRK11278 81 ESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 168 ILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYKTL 247
Cdd:PRK11278 161 IMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 248 ARPGSEDMGTKLMGFSGKVKNPGLWELPFGVSARELFEDYAGGMRDGFQLKAWQPGGAGTGFLLPEHLDAQMFAGGIAKV 327
Cdd:PRK11278 241 SKGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 328 GTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDLETLEQLVNFLGPGKTF 407
Cdd:PRK11278 321 GSRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTF 400
|
410 420 430
....*....|....*....|....*....|...
gi 15597837 408 CAHAPGAVEPLGSALKYFRAEFEAGISRQPSAA 440
Cdd:PRK11278 401 CAHAPGAVEPLQSAIKYFREEFEAGIKQPFSNT 433
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
20-433 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 739.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 20 PLTWRLReDAQPVWLEEYQSKDGYAAARKALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESLNIRYLLCNA 99
Cdd:TIGR01959 1 VLTTNLD-NPESWTLEEYEKRGGYDALRKALEEMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPKPKYLVCNA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 100 DEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKNILGSGFDFELFV 179
Cdd:TIGR01959 80 DESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 180 HTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYKTLARPgsEDMGTKL 259
Cdd:TIGR01959 160 HRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKE--KSPGTKL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 260 MGFSGKVKNPGLWELPFGVSARELFEDYAGGMRDGFQLKAWQPGGAGTGFLLPE-HLDAQMFAGGIAKVGTRMGTGLAMA 338
Cdd:TIGR01959 238 FSVSGHVNKPGNYELPLGTPLRELLEDYAGGMRGGWKLKAVIPGGSSTPVLPAEqHLDAPMDYDSLAAAGSMLGTGAVIV 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 339 VDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDLETLEQLVNFLGpGKTFCAHAPGAVEPL 418
Cdd:TIGR01959 318 MDESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIE-GKTICALGDAAAWPV 396
|
410
....*....|....*
gi 15597837 419 GSALKYFRAEFEAGI 433
Cdd:TIGR01959 397 QSAIKHFRDEFEAHI 411
|
|
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
16-433 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 685.59 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 16 AETHPLTWRLREDAQPVWLEEYQSKDGYAAARKALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESlNIRYL 95
Cdd:COG1894 1 KKQTRVLLRNCGIIDPESLEDYIARGGYQALRKALTEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPG-DPKYL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 96 LCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKNILGSGFDF 175
Cdd:COG1894 80 VCNADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 176 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYKTLARPGSedM 255
Cdd:COG1894 160 DIEVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKS--K 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 256 GTKLMGFSGKVKNPGLWELPFGVSARELFEDYAGGMRDGFQLKAWQPGGAGTGFLLPEHLDAQMFAGGIAKVGTRMGTGL 335
Cdd:COG1894 238 GTKLFSLSGHVKNPGLYEVPMGTTLRELIYDIGGGIRGGRKLKAVQPGGPSGGCLPAEHLDTPMDYESLAAAGSMLGSGG 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 336 AMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDLETLEQLVNFLGpGKTFCAHAPGAV 415
Cdd:COG1894 318 MIVMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIK-GTSLCALGDAAP 396
|
410
....*....|....*...
gi 15597837 416 EPLGSALKYFRAEFEAGI 433
Cdd:COG1894 397 NPVLSTLKYFRDEFEAHI 414
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
62-234 |
1.11e-66 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 210.06 E-value: 1.11e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 62 VKDSGLKGRGGAGFPTGVKWGLMPKDEslnIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLR 141
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSPPPKKK---IKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 142 GEYVDAARNLNRAIDEAKAAGllgknilgsgfdFELFVHTGAGRYICGEETALINSLEGRRaNPRSKPpfPAAVGVwgkp 221
Cdd:pfam01512 78 DEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGRG-VPRGKP--PADVGV---- 138
|
170
....*....|...
gi 15597837 222 tCVNNVETLCNVP 234
Cdd:pfam01512 139 -VVNNVETLAAVP 150
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
346-391 |
1.70e-18 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 78.72 E-value: 1.70e-18
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 15597837 346 VSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDL 391
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11278 |
PRK11278 |
NADH-quinone oxidoreductase subunit NuoF; |
8-440 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 236891 [Multi-domain] Cd Length: 448 Bit Score: 950.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 8 PANRMARSAETHPLTWRLREDAQPVWLEEYQSKDGYAAARKALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKD 87
Cdd:PRK11278 1 PMKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGMSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 88 ESLNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKN 167
Cdd:PRK11278 81 ESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 168 ILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYKTL 247
Cdd:PRK11278 161 IMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 248 ARPGSEDMGTKLMGFSGKVKNPGLWELPFGVSARELFEDYAGGMRDGFQLKAWQPGGAGTGFLLPEHLDAQMFAGGIAKV 327
Cdd:PRK11278 241 SKGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 328 GTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDLETLEQLVNFLGPGKTF 407
Cdd:PRK11278 321 GSRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTF 400
|
410 420 430
....*....|....*....|....*....|...
gi 15597837 408 CAHAPGAVEPLGSALKYFRAEFEAGISRQPSAA 440
Cdd:PRK11278 401 CAHAPGAVEPLQSAIKYFREEFEAGIKQPFSNT 433
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
20-433 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 739.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 20 PLTWRLReDAQPVWLEEYQSKDGYAAARKALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESLNIRYLLCNA 99
Cdd:TIGR01959 1 VLTTNLD-NPESWTLEEYEKRGGYDALRKALEEMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPKPKYLVCNA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 100 DEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKNILGSGFDFELFV 179
Cdd:TIGR01959 80 DESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 180 HTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYKTLARPgsEDMGTKL 259
Cdd:TIGR01959 160 HRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKE--KSPGTKL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 260 MGFSGKVKNPGLWELPFGVSARELFEDYAGGMRDGFQLKAWQPGGAGTGFLLPE-HLDAQMFAGGIAKVGTRMGTGLAMA 338
Cdd:TIGR01959 238 FSVSGHVNKPGNYELPLGTPLRELLEDYAGGMRGGWKLKAVIPGGSSTPVLPAEqHLDAPMDYDSLAAAGSMLGTGAVIV 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 339 VDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDLETLEQLVNFLGpGKTFCAHAPGAVEPL 418
Cdd:TIGR01959 318 MDESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIE-GKTICALGDAAAWPV 396
|
410
....*....|....*
gi 15597837 419 GSALKYFRAEFEAGI 433
Cdd:TIGR01959 397 QSAIKHFRDEFEAHI 411
|
|
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
16-433 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 685.59 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 16 AETHPLTWRLREDAQPVWLEEYQSKDGYAAARKALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESlNIRYL 95
Cdd:COG1894 1 KKQTRVLLRNCGIIDPESLEDYIARGGYQALRKALTEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPG-DPKYL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 96 LCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKNILGSGFDF 175
Cdd:COG1894 80 VCNADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 176 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYKTLARPGSedM 255
Cdd:COG1894 160 DIEVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKS--K 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 256 GTKLMGFSGKVKNPGLWELPFGVSARELFEDYAGGMRDGFQLKAWQPGGAGTGFLLPEHLDAQMFAGGIAKVGTRMGTGL 335
Cdd:COG1894 238 GTKLFSLSGHVKNPGLYEVPMGTTLRELIYDIGGGIRGGRKLKAVQPGGPSGGCLPAEHLDTPMDYESLAAAGSMLGSGG 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 336 AMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDLETLEQLVNFLGpGKTFCAHAPGAV 415
Cdd:COG1894 318 MIVMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIK-GTSLCALGDAAP 396
|
410
....*....|....*...
gi 15597837 416 EPLGSALKYFRAEFEAGI 433
Cdd:COG1894 397 NPVLSTLKYFRDEFEAHI 414
|
|
| PRK13596 |
PRK13596 |
NADH-quinone oxidoreductase subunit NuoF; |
48-448 |
5.67e-134 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 237441 Cd Length: 433 Bit Score: 392.41 E-value: 5.67e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 48 KALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESLNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLIS 127
Cdd:PRK13596 33 KAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDILRHDPHKLIEGCLIA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 128 ARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRS 207
Cdd:PRK13596 113 SFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFDIYVHHGAGAYICGEETALLESLEGKKGQPRL 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 208 KPPFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYKTLARPGSedMGTKLMGFSGKVKNPGLWELPFGVSARELFEDY 287
Cdd:PRK13596 193 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNN--TGTKLFCISGHVNKPCNVEEAMGIPFRELIEKH 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 288 AGGMRDGF-QLKAWQPGGAGTGfLLPEHL--DAQMFAGGIAKVGTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWC 364
Cdd:PRK13596 271 AGGVRGGWdNLLAVIPGGSSVP-LIPAEQceDAIMDFDSLRAVGSGLGTAAVIVMDKSTDIIKAIARLSYFYKHESCGQC 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 365 TPCRDGLPWSVKLLRALERGEGQPGDLETLEQLVNFLgPGKTFCAHAPGAVEPLGSALKYFRAEFEAGISRQPSAAPRPA 444
Cdd:PRK13596 350 TPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQI-EGHTICALGDAAAWPIQGLIRHFRPEIEERIDQYTANAHSDP 428
|
....
gi 15597837 445 TVGA 448
Cdd:PRK13596 429 LEAA 432
|
|
| PTZ00304 |
PTZ00304 |
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional |
48-441 |
4.89e-120 |
|
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Pssm-ID: 185547 [Multi-domain] Cd Length: 461 Bit Score: 357.94 E-value: 4.89e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 48 KALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESLN-IRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLI 126
Cdd:PTZ00304 53 KDILLKGHDWIIDEIKKSGLRGRGGAGFPSGLKWSFMPKVKPDGrPSYLVVNADESEPGTCKDREIMRHDPHKLVEGALL 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 127 SARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPR 206
Cdd:PTZ00304 133 AGFAMRARAAYIYIRGEFYNEARALQQAIDEAYKKGFLGKNACGSGYDFDVYVHRGAGAYICGEETALIESIEGKPGKPR 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 207 SKPPFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYKTLARPGseDMGTKLMGFSGKVKNPGLWELPFGVSARELFED 286
Cdd:PTZ00304 213 LKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPQWFASFGRPN--NAGTKLFCISGHVNNPCTVEEEMSIPLRELIER 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 287 YAGGMRDGF-QLKAWQPGGAGTGfLLPEHL--DAQMFAGGIAKVGTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGW 363
Cdd:PTZ00304 291 HCGGVRGGWdNLLCVIPGGSSVP-LIPKEIcdNVLMDFDALKEVQSGLGTAAVIVMDKSTDIIDAILRLSKFYKHESCGQ 369
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15597837 364 CTPCRDGLPWSVKLLRALERGEGQPGDLETLEQLVNFLgPGKTFCAHAPGAVEPLGSALKYFRAEFEAGISRQPSAAP 441
Cdd:PTZ00304 370 CTPCREGTPWLVKMMERFVVGNADKEEIDTLEEVSKQI-EGHTICALGDAAAWPVQGLIRHFRPEIEERIERYWEANP 446
|
|
| PLN03132 |
PLN03132 |
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional |
48-439 |
1.76e-117 |
|
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Pssm-ID: 178678 [Multi-domain] Cd Length: 461 Bit Score: 351.48 E-value: 1.76e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 48 KALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESLNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLIS 127
Cdd:PLN03132 64 KDLVLKGPDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIA 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 128 ARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRS 207
Cdd:PLN03132 144 GVGMRARAAYIYIRGEYVNERLNLERARHEAYAAGLLGKNACGSGYDFDVYIHYGAGAYICGEETALLESLEGKQGKPRL 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 208 KPPFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYKTLARPGSEdmGTKLMGFSGKVKNPGLWELPFGVSARELFEDY 287
Cdd:PLN03132 224 KPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNA--GTKLFCISGHVNKPCTVEEEMSIPLKELIERH 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 288 AGGMRDGFQ-LKAWQPGGAGTGfLLPEHL--DAQMFAGGIAKVGTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWC 364
Cdd:PLN03132 302 CGGVRGGWDnLLAIIPGGSSVP-LLPKKIcdDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQC 380
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15597837 365 TPCRDGLPWSVKLLRALERGEGQPGDLETLEQLVNFLgPGKTFCAHAPGAVEPLGSALKYFRAEFEAGISRQPSA 439
Cdd:PLN03132 381 TPCREGTGWLWDIMERMKVGNAKLEEIDMLQEVTKQI-EGHTICALGDAAAWPVQGLIRHFRPELERRIKERAER 454
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
62-234 |
1.11e-66 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 210.06 E-value: 1.11e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 62 VKDSGLKGRGGAGFPTGVKWGLMPKDEslnIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLR 141
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSPPPKKK---IKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 142 GEYVDAARNLNRAIDEAKAAGllgknilgsgfdFELFVHTGAGRYICGEETALINSLEGRRaNPRSKPpfPAAVGVwgkp 221
Cdd:pfam01512 78 DEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGRG-VPRGKP--PADVGV---- 138
|
170
....*....|...
gi 15597837 222 tCVNNVETLCNVP 234
Cdd:pfam01512 139 -VVNNVETLAAVP 150
|
|
| NADH_4Fe-4S |
pfam10589 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
348-431 |
3.00e-34 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 463160 [Multi-domain] Cd Length: 85 Bit Score: 122.97 E-value: 3.00e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 348 LLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDLETLEQLVNFLGpGKTFCAHAPGAVEPLGSALKYFRA 427
Cdd:pfam10589 2 VARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIK-GRSLCGLGDGAANPVLSALRYFRD 80
|
....
gi 15597837 428 EFEA 431
Cdd:pfam10589 81 EFEA 84
|
|
| RnfC |
COG4656 |
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ... |
33-317 |
9.43e-19 |
|
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443694 [Multi-domain] Cd Length: 451 Bit Score: 88.27 E-value: 9.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 33 WLEEYQSKDgyaaarkaLTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKwgLMPKDESlNIRYLLCNADEMEPN-TWKDRM 111
Cdd:COG4656 107 WIELEPLAD--------YEDLSPEEIIERIREAGIVGLGGAGFPTHVK--LSPPPDK-KIDTLIINGAECEPYlTCDDRL 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 112 LMEQlPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKaagllgknilgsgfDFElfVHTGAGRYICGEE 191
Cdd:COG4656 176 MRER-AEEIIEGIRILMKALGAKKVIIGIEDNKPEAIAALRKALAGDD--------------DIE--VVVLPTKYPQGGE 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 192 TALINSLEGRRANPRSkppFPAAVGVwgkptCVNNVETLCNVPAIVGNGvdwyktlaRPGSEDMGTkLMGfsGKVKNPGL 271
Cdd:COG4656 239 KQLIKALTGREVPSGG---LPADVGV-----VVQNVGTAYAIYRAVRDG--------KPLIERVVT-VTG--DAVKEPGN 299
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 15597837 272 WELPFGVSARELFEdYAGGMRDgfqlkawQP-----GGAGTGFLLPeHLDA 317
Cdd:COG4656 300 LLVRIGTPVSDLLE-QAGGFKE-------EPgklimGGPMMGFALP-SLDV 341
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
346-391 |
1.70e-18 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 78.72 E-value: 1.70e-18
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 15597837 346 VSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDL 391
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| rnfC |
TIGR01945 |
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in ... |
52-293 |
7.44e-14 |
|
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport]
Pssm-ID: 273888 [Multi-domain] Cd Length: 435 Bit Score: 73.15 E-value: 7.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 52 QMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDEslnIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARAL 131
Cdd:TIGR01945 118 NLSPEEILEKIRAAGIVGLGGATFPTHVKLNPPPEKK---IETLIINGAECEPYLTCDDRLMRERAEEIIGGIRILLKIL 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 132 KAYRGYIFLRGEYVDAARNLNRAideakaagLLGKNILgsgfdfelfVHTGAGRYICGEETALINSLEGRRAnPRSKppF 211
Cdd:TIGR01945 195 GVKKVVIGIEDNKPEAIAALKKA--------LGGYNIK---------VRVLPTKYPQGGEKQLIYALTGREV-PSGG--L 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 212 PAAVGVwgkptCVNNVETLCNVPAIVGNGvdwyktlaRPGSEdmgtKLMGFSGK-VKNPGLWELPFGVSARELFeDYAGG 290
Cdd:TIGR01945 255 PADIGV-----VVQNVGTAFAIYEAVVNG--------KPLIE----RVVTVTGDaIRRPKNLWVLIGTPVSDIL-AFCGG 316
|
...
gi 15597837 291 MRD 293
Cdd:TIGR01945 317 FRE 319
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
52-135 |
2.73e-06 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 49.56 E-value: 2.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597837 52 QMAQDDIVQTVKDSGLKGRGGAGFPTGVKwgLMPKDESlnIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARAL 131
Cdd:PRK05035 124 QLSPEELIERIRQAGIAGLGGAGFPTAVK--LQPGGDK--IETLIINGAECEPYITADDRLMRERADEIIEGIRILAHLL 199
|
....
gi 15597837 132 KAYR 135
Cdd:PRK05035 200 QPKE 203
|
|
| |
