|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
11-574 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 704.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 11 QMTAEWIPLGQRLLERGLVSGQELERALDLQRRLGGRLGGILVRSGAISENTLMQVLAEQLRLPLVGDDLRKPSEESIAA 90
Cdd:COG2804 1 GALSLLLRLGDLLVEAGLISEEQLLAALAEQKKTGKPLGELLVELGLVTEELLAEALAEQLGLPFVDLDELEIDPEVLEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 91 FLLStpintdwFVEEQLVV--WEEGEQLLFAARDPLSPSIRETLGYFYPeRSIQAVLCRSQDLDGWLEHSL-------DL 161
Cdd:COG2804 81 LPEE-------LARRHRVLplRLEGGTLTVAMADPLDLEALDELRRLTG-RPVEPVVATESDIERALDRLYgsessieEL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 162 ARQGADRHAYGSEDIRYLRELAEEAPVVELVNNVMSQAMEKRSSDIHIEPREFDFRIRFRVDGVLHDQLSLPRERFAAVV 241
Cdd:COG2804 153 LEELAEDLTSEEEDLEDLLEEADDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLAPALV 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 242 SRIKLISAIDIAERRLPQDGRMSIRVSGTELDVRVSTLPGVHGESVVMRLLPKEREGLRLDRLGMLPDHLRRMRAWVAEP 321
Cdd:COG2804 233 SRIKIMANLDIAERRLPQDGRIKLRLGGREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQLERLRRLIRRP 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 322 HGIILVTGPTGSGKSTTLYGALEEINDGVRKLISVEDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDPDVIMIGEIR 401
Cdd:COG2804 313 HGIILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQDPDVIMVGEIR 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 402 DLETAEIAVQSSLTGHLVLSTLHTNDAVSAFTRLIDMGVEPFLVASPVRGVQAQRLVRRLCAHCAEPCEPTLAAADLAAT 481
Cdd:COG2804 393 DLETAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEPDPEELERLGL 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 482 EAATARLFpgqaaQWRVARGCGRCEGTGYSGRVGIYELVDLSSEMRDLIVQRASLEQMHRLAASQGQRNLREDGLIKAWL 561
Cdd:COG2804 473 PPEELAPL-----TFYRGVGCEHCNGTGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEGMRTLREDGLEKVLQ 547
|
570
....*....|...
gi 15597873 562 GMTSLDEVHRVTS 574
Cdd:COG2804 548 GITTLEEVLRVTG 560
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
111-573 |
0e+00 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 546.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 111 EEGEQLLFAARDPLSPS----IRETLGYfyperSIQAVLCRSQDLDGWLEHSLDLARQGA-------------DRHAYGS 173
Cdd:TIGR02533 19 EHDGTLVVAVSDPLDLAaldeVRRLFGA-----PVQLIIATASEIDDAINSVYARTGSAAaqiveeiegeddlSALELDE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 174 EDIRYLRELAEEAPVVELVNNVMSQAMEKRSSDIHIEPREFDFRIRFRVDGVLHDQLSLPRERFAAVVSRIKLISAIDIA 253
Cdd:TIGR02533 94 PKIEDLLDLEDDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAALVSRVKIMAKLNIA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 254 ERRLPQDGRMSIRVSGTELDVRVSTLPGVHGESVVMRLLPKEREGLRLDRLGMLPDHLRRMRAWVAEPHGIILVTGPTGS 333
Cdd:TIGR02533 174 EKRLPQDGRISLRVGGRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRRPHGIILVTGPTGS 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 334 GKSTTLYGALEEINDGVRKLISVEDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDPDVIMIGEIRDLETAEIAVQSS 413
Cdd:TIGR02533 254 GKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQAS 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 414 LTGHLVLSTLHTNDAVSAFTRLIDMGVEPFLVASPVRGVQAQRLVRRLCAHCAEPCEPtlaaadLAATEAATARLFPGQA 493
Cdd:TIGR02533 334 LTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEA------TPEEIALFGISPEGPI 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 494 AQWRvARGCGRCEGTGYSGRVGIYELVDLSSEMRDLIVQRASLEQMHRLAASQGQRNLREDGLIKAWLGMTSLDEVHRVT 573
Cdd:TIGR02533 408 NLYR-PVGCPHCNHTGYLGRTGIYELLIVDDDLRSLIHSRADEGEIKEIARAAGMRTLRDDGLRKVLAGITTIEEVLRVT 486
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
180-573 |
7.67e-142 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 418.56 E-value: 7.67e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 180 RELAEEAPVVELVNNVMSQAMEKRSSDIHIEPREFDFRIRFRVDGVLHDQLSLPRERFAAVVSRIKLISAIDIAERRLPQ 259
Cdd:PRK10436 76 ADQEKDTPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNLDIAERRLPQ 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 260 DGRMSIRVSGTELDVRVSTLPGVHGESVVMRLLPKEREGLRLDRLGMLPDHLRRMRAWVAEPHGIILVTGPTGSGKSTTL 339
Cdd:PRK10436 156 DGQFTVELAGNAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 340 YGALEEINDGVRKLISVEDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDPDVIMIGEIRDLETAEIAVQSSLTGHLV 419
Cdd:PRK10436 236 YSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLV 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 420 LSTLHTNDAVSAFTRLIDMGVEPFLVASPVRGVQAQRLVRRLCAHCAEPCEPtlaaadlaaTEAATARLFPGQAAQWRvA 499
Cdd:PRK10436 316 LSTLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRQQASE---------PIHLPPNIWPGPLPHWQ-A 385
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15597873 500 RGCGRCEgTGYSGRVGIYELVDLSSEMRDLIVQRASLEQMHRLAASQGQRNLREDGLIKAWLGMTSLDEVHRVT 573
Cdd:PRK10436 386 VGCEHCY-HGYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQGMTTLFENGLLAVEQGLTTLEELYRVL 458
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
193-461 |
1.07e-118 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 351.97 E-value: 1.07e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 193 NNVMSQAMEKRSSDIHIEPREFDFRIRFRVDGVLHDQLSLPRERFAAVVSRIKLISAIDIAERRLPQDGRMSIRVSGTEL 272
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRIGGKGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 273 DVRVSTLPGVHGESVVMRLLPKEREGLRLDRLGMLPDHLRRMRAWVAEPHGIILVTGPTGSGKSTTLYGALEEINDGVRK 352
Cdd:pfam00437 81 RVRVSTLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDEN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 353 LISVEDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDPDVIMIGEIRDLETAEIAVQSSLTGHLVLSTLHTNDAVSAF 432
Cdd:pfam00437 161 IVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGAL 240
|
250 260
....*....|....*....|....*....
gi 15597873 433 TRLIDMGVEPFLVASPVRGVQAQRLVRRL 461
Cdd:pfam00437 241 TRLQDMGVPPFELASSLLLVIAQRLVRKL 269
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
193-458 |
1.39e-91 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 282.41 E-value: 1.39e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 193 NNVMSQAMEKRSSDIHIEPREFDFRIRFRVDGVLHDQLSLPRERFAAVVSRIKLISAIDIAERRLPQDGRMSIRVSGTEL 272
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 273 DVRVSTLPGVHG-ESVVMRLLPKEREGLRLDRLgmlPDHLRRMRAWVAEPHGIILVTGPTGSGKSTTLYgALEEINDGVR 351
Cdd:NF041000 81 SLRLSTVGDFLGrESLVIRLLYQLEQIKPQLFF---PEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMY-SLARKLALNK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 352 KLISVEDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDPDVIMIGEIRDLETAEIAVQSSLTGHLVLSTLHTNDAVSA 431
Cdd:NF041000 157 QVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAGV 236
|
250 260
....*....|....*....|....*..
gi 15597873 432 FTRLIDMGVEPFLVASPVRGVQAQRLV 458
Cdd:NF041000 237 IYRLLELGISKEELEQTLIGISYQRLI 263
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
313-460 |
7.13e-88 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 268.58 E-value: 7.13e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 313 RMRAWVAEPHGIILVTGPTGSGKSTTLYGALEEINDGVRKLISVEDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDP 392
Cdd:cd01129 2 RLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQDP 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15597873 393 DVIMIGEIRDLETAEIAVQSSLTGHLVLSTLHTNDAVSAFTRLIDMGVEPFLVASPVRGVQAQRLVRR 460
Cdd:cd01129 82 DIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGR 149
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
321-400 |
7.81e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 40.05 E-value: 7.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 321 PHGIILVTGPTGSGKSTTLYGALEEINDGVRKLISV-------EDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDPD 393
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIdgedileEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80
|
....*..
gi 15597873 394 VIMIGEI 400
Cdd:smart00382 81 VLILDEI 87
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
11-574 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 704.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 11 QMTAEWIPLGQRLLERGLVSGQELERALDLQRRLGGRLGGILVRSGAISENTLMQVLAEQLRLPLVGDDLRKPSEESIAA 90
Cdd:COG2804 1 GALSLLLRLGDLLVEAGLISEEQLLAALAEQKKTGKPLGELLVELGLVTEELLAEALAEQLGLPFVDLDELEIDPEVLEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 91 FLLStpintdwFVEEQLVV--WEEGEQLLFAARDPLSPSIRETLGYFYPeRSIQAVLCRSQDLDGWLEHSL-------DL 161
Cdd:COG2804 81 LPEE-------LARRHRVLplRLEGGTLTVAMADPLDLEALDELRRLTG-RPVEPVVATESDIERALDRLYgsessieEL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 162 ARQGADRHAYGSEDIRYLRELAEEAPVVELVNNVMSQAMEKRSSDIHIEPREFDFRIRFRVDGVLHDQLSLPRERFAAVV 241
Cdd:COG2804 153 LEELAEDLTSEEEDLEDLLEEADDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLAPALV 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 242 SRIKLISAIDIAERRLPQDGRMSIRVSGTELDVRVSTLPGVHGESVVMRLLPKEREGLRLDRLGMLPDHLRRMRAWVAEP 321
Cdd:COG2804 233 SRIKIMANLDIAERRLPQDGRIKLRLGGREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQLERLRRLIRRP 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 322 HGIILVTGPTGSGKSTTLYGALEEINDGVRKLISVEDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDPDVIMIGEIR 401
Cdd:COG2804 313 HGIILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQDPDVIMVGEIR 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 402 DLETAEIAVQSSLTGHLVLSTLHTNDAVSAFTRLIDMGVEPFLVASPVRGVQAQRLVRRLCAHCAEPCEPTLAAADLAAT 481
Cdd:COG2804 393 DLETAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEPDPEELERLGL 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 482 EAATARLFpgqaaQWRVARGCGRCEGTGYSGRVGIYELVDLSSEMRDLIVQRASLEQMHRLAASQGQRNLREDGLIKAWL 561
Cdd:COG2804 473 PPEELAPL-----TFYRGVGCEHCNGTGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEGMRTLREDGLEKVLQ 547
|
570
....*....|...
gi 15597873 562 GMTSLDEVHRVTS 574
Cdd:COG2804 548 GITTLEEVLRVTG 560
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
111-573 |
0e+00 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 546.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 111 EEGEQLLFAARDPLSPS----IRETLGYfyperSIQAVLCRSQDLDGWLEHSLDLARQGA-------------DRHAYGS 173
Cdd:TIGR02533 19 EHDGTLVVAVSDPLDLAaldeVRRLFGA-----PVQLIIATASEIDDAINSVYARTGSAAaqiveeiegeddlSALELDE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 174 EDIRYLRELAEEAPVVELVNNVMSQAMEKRSSDIHIEPREFDFRIRFRVDGVLHDQLSLPRERFAAVVSRIKLISAIDIA 253
Cdd:TIGR02533 94 PKIEDLLDLEDDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAALVSRVKIMAKLNIA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 254 ERRLPQDGRMSIRVSGTELDVRVSTLPGVHGESVVMRLLPKEREGLRLDRLGMLPDHLRRMRAWVAEPHGIILVTGPTGS 333
Cdd:TIGR02533 174 EKRLPQDGRISLRVGGRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRRPHGIILVTGPTGS 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 334 GKSTTLYGALEEINDGVRKLISVEDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDPDVIMIGEIRDLETAEIAVQSS 413
Cdd:TIGR02533 254 GKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQAS 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 414 LTGHLVLSTLHTNDAVSAFTRLIDMGVEPFLVASPVRGVQAQRLVRRLCAHCAEPCEPtlaaadLAATEAATARLFPGQA 493
Cdd:TIGR02533 334 LTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEA------TPEEIALFGISPEGPI 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 494 AQWRvARGCGRCEGTGYSGRVGIYELVDLSSEMRDLIVQRASLEQMHRLAASQGQRNLREDGLIKAWLGMTSLDEVHRVT 573
Cdd:TIGR02533 408 NLYR-PVGCPHCNHTGYLGRTGIYELLIVDDDLRSLIHSRADEGEIKEIARAAGMRTLRDDGLRKVLAGITTIEEVLRVT 486
|
|
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
19-574 |
2.89e-169 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 492.22 E-value: 2.89e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 19 LGQRLLERGLVSGQELERALDLQRRLGGRLGGILVRSGAISENTLMQVLAEQLRLPLVgdDLRkpsEESIAAFLlstpin 98
Cdd:TIGR02538 2 LGRILVKAGLLTETQAQAALEEAQASGQPLVQYLIQNGLLDPKQLAEFLSREFGVPLL--DLN---AFDPDALP------ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 99 TDWFVEEQLV------VWEEGEQLLFAARDPLSPSIRETLGyFYPERSIQAVLCRSQDLDGWLEH------SLDLARQGA 166
Cdd:TIGR02538 71 VQLVSEELIQkhqalpLFKRGNTLFVAVSDPTNISALDDIR-FATGLNVEVVIVEEDKLSALIEKyyggsdSLAKELGDE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 167 DRHAYGSEDI----------RYLRELAEEAPVVELVNNVMSQAMEKRSSDIHIEPREFDFRIRFRVDGVLHDQLSLPRER 236
Cdd:TIGR02538 150 DIGDLEELDVdaiddegpddIEQDAVDDDAPIVKFVNKILLDAIRKGASDIHFEPYEKSYRVRFRIDGILHEVAQPPLAL 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 237 FAAVVSRIKLISAIDIAERRLPQDGRMSIRVSGT-ELDVRVSTLPGVHGESVVMRLLPKEREGLRLDRLGMLPDHLRRMR 315
Cdd:TIGR02538 230 ANRIAARIKVMSRLDIAEKRIPQDGRIKLKLSKSkAIDFRVSTLPTLFGEKVVLRILDSSAAQLDIDKLGFEPDQKALFL 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 316 AWVAEPHGIILVTGPTGSGKSTTLYGALEEINDGVRKLISVEDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDPDVI 395
Cdd:TIGR02538 310 EAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDII 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 396 MIGEIRDLETAEIAVQSSLTGHLVLSTLHTNDAVSAFTRLIDMGVEPFLVASPVRGVQAQRLVRRLCAHCAEPCEPTLAA 475
Cdd:TIGR02538 390 MVGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSVNLIMAQRLARRLCSHCKAPEEVPAEA 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 476 ADLAATEaatarlfPGQAAQWRVAR--GCGRCEGTGYSGRVGIYELVDLSSEMRDLIVQRASLEQMHRLAASQGQRNLRE 553
Cdd:TIGR02538 470 LLELGFT-------QEDLADLKLYGpvGCDECSNTGYKGRVGIYEVMPMSEEIAELILKGGNALQIAELAQKEGMRTLRR 542
|
570 580
....*....|....*....|.
gi 15597873 554 DGLIKAWLGMTSLDEVHRVTS 574
Cdd:TIGR02538 543 SGLLKVKQGVTSLEEVLRVTV 563
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
180-573 |
7.67e-142 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 418.56 E-value: 7.67e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 180 RELAEEAPVVELVNNVMSQAMEKRSSDIHIEPREFDFRIRFRVDGVLHDQLSLPRERFAAVVSRIKLISAIDIAERRLPQ 259
Cdd:PRK10436 76 ADQEKDTPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNLDIAERRLPQ 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 260 DGRMSIRVSGTELDVRVSTLPGVHGESVVMRLLPKEREGLRLDRLGMLPDHLRRMRAWVAEPHGIILVTGPTGSGKSTTL 339
Cdd:PRK10436 156 DGQFTVELAGNAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 340 YGALEEINDGVRKLISVEDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDPDVIMIGEIRDLETAEIAVQSSLTGHLV 419
Cdd:PRK10436 236 YSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLV 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 420 LSTLHTNDAVSAFTRLIDMGVEPFLVASPVRGVQAQRLVRRLCAHCAEPCEPtlaaadlaaTEAATARLFPGQAAQWRvA 499
Cdd:PRK10436 316 LSTLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRQQASE---------PIHLPPNIWPGPLPHWQ-A 385
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15597873 500 RGCGRCEgTGYSGRVGIYELVDLSSEMRDLIVQRASLEQMHRLAASQGQRNLREDGLIKAWLGMTSLDEVHRVT 573
Cdd:PRK10436 386 VGCEHCY-HGYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQGMTTLFENGLLAVEQGLTTLEELYRVL 458
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
193-461 |
1.07e-118 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 351.97 E-value: 1.07e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 193 NNVMSQAMEKRSSDIHIEPREFDFRIRFRVDGVLHDQLSLPRERFAAVVSRIKLISAIDIAERRLPQDGRMSIRVSGTEL 272
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRIGGKGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 273 DVRVSTLPGVHGESVVMRLLPKEREGLRLDRLGMLPDHLRRMRAWVAEPHGIILVTGPTGSGKSTTLYGALEEINDGVRK 352
Cdd:pfam00437 81 RVRVSTLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDEN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 353 LISVEDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDPDVIMIGEIRDLETAEIAVQSSLTGHLVLSTLHTNDAVSAF 432
Cdd:pfam00437 161 IVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGAL 240
|
250 260
....*....|....*....|....*....
gi 15597873 433 TRLIDMGVEPFLVASPVRGVQAQRLVRRL 461
Cdd:pfam00437 241 TRLQDMGVPPFELASSLLLVIAQRLVRKL 269
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
193-458 |
1.39e-91 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 282.41 E-value: 1.39e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 193 NNVMSQAMEKRSSDIHIEPREFDFRIRFRVDGVLHDQLSLPRERFAAVVSRIKLISAIDIAERRLPQDGRMSIRVSGTEL 272
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 273 DVRVSTLPGVHG-ESVVMRLLPKEREGLRLDRLgmlPDHLRRMRAWVAEPHGIILVTGPTGSGKSTTLYgALEEINDGVR 351
Cdd:NF041000 81 SLRLSTVGDFLGrESLVIRLLYQLEQIKPQLFF---PEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMY-SLARKLALNK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 352 KLISVEDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDPDVIMIGEIRDLETAEIAVQSSLTGHLVLSTLHTNDAVSA 431
Cdd:NF041000 157 QVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAGV 236
|
250 260
....*....|....*....|....*..
gi 15597873 432 FTRLIDMGVEPFLVASPVRGVQAQRLV 458
Cdd:NF041000 237 IYRLLELGISKEELEQTLIGISYQRLI 263
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
313-460 |
7.13e-88 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 268.58 E-value: 7.13e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 313 RMRAWVAEPHGIILVTGPTGSGKSTTLYGALEEINDGVRKLISVEDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDP 392
Cdd:cd01129 2 RLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQDP 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15597873 393 DVIMIGEIRDLETAEIAVQSSLTGHLVLSTLHTNDAVSAFTRLIDMGVEPFLVASPVRGVQAQRLVRR 460
Cdd:cd01129 82 DIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGR 149
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
192-460 |
1.95e-61 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 206.48 E-value: 1.95e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 192 VNNVMSQAMEKRSSDIHIEPREfdfRIRFRVDGVLH--DQLSLPRERFAAVVSRIklisaidiaerrLPQDGRMSIRVSG 269
Cdd:COG2805 5 LDELLKLAVEQGASDLHLTVGS---PPMLRIDGELVplDDPPLTPEDLEALLKEI------------LTEEQRERLEEEG 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 270 tELD----------VRVSTLPGVHGESVVMRLLPKERegLRLDRLGmLPDHLRRMrawVAEPHGIILVTGPTGSGKSTTL 339
Cdd:COG2805 70 -ELDfsyslpglgrFRVNIFRQRGGVAAVLRLIPSEI--PTLEELG-LPPVLKEL---AELPRGLVLVTGPTGSGKSTTL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 340 YGALEEIN-DGVRKLISVEDPVEYQVPN----ITQVQVHADIgLTFAAALRSILRQDPDVIMIGEIRDLETAEIAVQSSL 414
Cdd:COG2805 143 AAMIDYINeTRAKHIITIEDPIEFVHKHkkslINQREVGRDT-PSFANALRAALREDPDVILVGEMRDLETIEAALTAAE 221
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 15597873 415 TGHLVLSTLHTNDAVSAFTRLIDMgvepF----------LVASPVRGVQAQRLVRR 460
Cdd:COG2805 222 TGHLVFATLHTNSAAQTIDRIIDV----FppeeqaqirsQLAESLRGVISQRLLPR 273
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
301-460 |
6.03e-49 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 169.26 E-value: 6.03e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 301 LDRLGmLPDHLRRMrawVAEPHGIILVTGPTGSGKSTTLYGALEEIN-DGVRKLISVEDPVEYQVPN----ITQVQVHAD 375
Cdd:cd01131 4 FEELG-LPPVLKDL---ALKPRGLVLVTGPTGSGKSTTLAAMIDYINeTRSKHIITIEDPIEFVHKHkkslINQREVGRD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 376 iGLTFAAALRSILRQDPDVIMIGEIRDLETAEIAVQSSLTGHLVLSTLHTNDAVSAFTRLIDMgvepF----------LV 445
Cdd:cd01131 80 -TESFAAALRAALREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDV----FppeqqeqvriQL 154
|
170
....*....|....*
gi 15597873 446 ASPVRGVQAQRLVRR 460
Cdd:cd01131 155 ASSLRGVISQRLLPK 169
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
192-460 |
6.26e-49 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 173.28 E-value: 6.26e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 192 VNNVMSQAMEKRSSDIHIEPrefDFRIRFRVDGVLhdqLSLPRERFAAVVSRiKLISAI--DIAERRLPQDGRMSIRVSG 269
Cdd:TIGR01420 2 LEEILREAVKLGASDIHLTA---GAPPAMRIDGDL---VRIEFEPLTPEDTQ-KLAREIlsEKQREEFEENGELDFSFSL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 270 TELD-VRVSTLPGVHGESVVMRLLPKERegLRLDRLGmLPDHLRRMrawVAEPHGIILVTGPTGSGKSTTLYGALEEIND 348
Cdd:TIGR01420 75 PGVGrFRVNAFYQRGGVALVLRLIPSKI--PTFEELG-LPPVLREL---AERPRGLILVTGPTGSGKSTTLASMIDYINK 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 349 GV-RKLISVEDPVEYQVPN----ITQVQVHADIgLTFAAALRSILRQDPDVIMIGEIRDLETAEIAVQSSLTGHLVLSTL 423
Cdd:TIGR01420 149 NKaYHIITIEDPIEYVHTNkrslINQREVGEDT-LSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTL 227
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 15597873 424 HTNDAVSAFTRLIDMgvepF----------LVASPVRGVQAQRLVRR 460
Cdd:TIGR01420 228 HTNSAAQTIERIIDV----FpaeeqeqirtQLAESLVAIISQRLLPK 270
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
323-461 |
4.83e-41 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 146.00 E-value: 4.83e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 323 GIILVTGPTGSGKSTTLYGALEEINDGvRKLISVEDPVEYQVP---NITQVQVHADIglTFAAALRSILRQDPDVIMIGE 399
Cdd:cd19477 11 KNVIVCGGTGSGKTTYIKSILEFIPKE-ERIISIEDTEEIVFKhhkNYTQLFFGGNI--TSADCLKSCLRQRPDRIILGE 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15597873 400 IRDlETAEIAVQSSLTGH-LVLSTLHTNDAVSAFTRLIDMG------------VEPFLVASPVRGVQAQRLVRRL 461
Cdd:cd19477 88 LRS-SEAYDFYNVLCSGHkGTLTTLHAGSSEEAFIRLAN*SssnsaarnikfeSLIEGFKDLIDGIVHINHHKQC 161
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
323-459 |
1.35e-34 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 129.03 E-value: 1.35e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 323 GIILVTGPTGSGKSTTL---YGALEEINDGVRKLISVEDPVEY-------QVPNITQVQVHADIgLTFAAALRSILRQDP 392
Cdd:cd19516 12 GLVYVAGATGSGKSTLLaaiYRYILENDPPDRKIITYEDPIEFvydgiksKHSIIVQSQIPRHF-KSFAKAVREALRRKP 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15597873 393 DVIMIGEIRDLETAEIAVQSSLTGHLVLSTLHTNDAVSAFTRLIDMGVEP------FLVASPVRGVQAQRLVR 459
Cdd:cd19516 91 SLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISLFPPEerdaaaYDLLSTLRFIIVQRLVR 163
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
301-460 |
3.64e-34 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 133.30 E-value: 3.64e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 301 LDRLGmLPDHLRRMrawVAEPHGIILVTGPTGSGKSTTLYGALEEINDGVR-KLISVEDPVEYQVPN----ITQVQVHAD 375
Cdd:COG5008 106 LDELG-LPPVLKDL---IMEKRGLVLFVGATGSGKSTTLAAMIDHRNENSSgHILTIEDPIEFVHKHkksiVTQREVGVD 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 376 IgLTFAAALRSILRQDPDVIMIGEIRDLETAEIAVQSSLTGHLVLSTLHTNDAVSAFTRLI-------------DMgvep 442
Cdd:COG5008 182 T-ESYEVALKNALRQAPDVILIGEIRDRETMEHAIAFAETGHLCLATLHANNANQALDRIInffpeerrpqllmDL---- 256
|
170
....*....|....*...
gi 15597873 443 flvASPVRGVQAQRLVRR 460
Cdd:COG5008 257 ---SLNLRAIVSQRLVPT 271
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
286-459 |
4.58e-25 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 107.20 E-value: 4.58e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 286 SVVMRLLPKEREglRLDRLGMLPDHLRRMrawvAEPHGIILVTGPTGSGKSTTLYGALEEI--NDGVRKLISVEDPVEYQ 363
Cdd:TIGR02525 119 SLTLRVIPSDIP--DLKQMGIEPDLFNSL----LPAAGLGLICGETGSGKSTLAASIYQHCgeTYPDRKIVTYEDPIEYI 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 364 V--PNI----TQVQVHADIGlTFAAALRSILRQDPDVIMIGEIRDLETAEIAVQSSLTGHLVLSTLHTNDAVSAFTRLID 437
Cdd:TIGR02525 193 LgsPDDllppAQSQIGRDVD-SFANGIRLALRRAPKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISRCLQ 271
|
170 180
....*....|....*....|....*....
gi 15597873 438 MgVEP-------FLVASPVRGVQAQRLVR 459
Cdd:TIGR02525 272 M-YPPemreaaaFDLLSILQYIIVQRLLR 299
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
325-441 |
1.25e-17 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 80.66 E-value: 1.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 325 ILVTGPTGSGKSTTLYGALEEINDGVRkLISVEDPVEYQVPN------ITQVQVHADIGLTFAAALRSILRQDPDVIMIG 398
Cdd:cd01130 15 ILISGGTGSGKTTLLNALLSFIPPDER-IVTIEDTRELQLPHpnvvhlLTRPGGGEKGEVTMADLLKAALRMRPDRIIVG 93
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 15597873 399 EIRDLETAEiAVQSSLTGHL-VLSTLHTNDAVSAFTRLIDMGVE 441
Cdd:cd01130 94 EVRGGEAYD-MLQAMNTGHPgSITTIHANSAEDAIDRLATLVLE 136
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
283-447 |
3.07e-16 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 81.28 E-value: 3.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 283 HGESVVMRllpKEREG----LRLDRLGMLPdhlRRMRA--WVA-EPHGIILVTGPTGSGKSTTLYGALEEINDGvRKLIS 355
Cdd:COG0630 250 RGSSFTIR---KFREVpltpIDLIEWGTLS---PELAAylWLLlENGKSVLVAGGTASGKTTLLNALLSFIPPD-AKIVT 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 356 VEDPVEYQVPNITQVQVHA---------DIGLtfAAALRSILRQDPDVIMIGEIRDLEtAEIAVQSSLTGHLVLSTLHTN 426
Cdd:COG0630 323 IEDTRELNLPHENWISLVTresfggeegDVTM--FDLLKAALRQRPDYIVVGEVRGEE-AYTLFQAMATGHGVLSTFHAD 399
|
170 180
....*....|....*....|...
gi 15597873 427 DAVSAFTRLID--MGVEPFLVAS 447
Cdd:COG0630 400 SVESAINRLTSppINVPRTLLQA 422
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
322-435 |
2.06e-12 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 68.23 E-value: 2.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 322 HGIILVTGPTGSGKSTTLYGALEE--INDGVRKLISVEDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDPDVIMIGE 399
Cdd:PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEmvIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227
|
90 100 110
....*....|....*....|....*....|....*..
gi 15597873 400 IRDLETAEIaVQSSLTGHL-VLSTLHTNDAVSAFTRL 435
Cdd:PRK13894 228 VRGPEALDL-LMAWNTGHEgGAATLHANNAKAGLDRL 263
|
|
| nfrB |
PRK11234 |
phage adsorption protein NrfB; |
18-132 |
7.32e-12 |
|
phage adsorption protein NrfB;
Pssm-ID: 236884 [Multi-domain] Cd Length: 727 Bit Score: 68.23 E-value: 7.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 18 PLGQRLLERGLVSGQELERALdLQRRLGGRLGGILVRSGAISENTLMQVLAEQLRLPLVGDDLRKPSEESIAAFLLSTPI 97
Cdd:PRK11234 483 PLGQILLENGVITEEQLDTAL-RNRVRGLRLGQSLLMQGLISAEQLAQALAEQNGVAWESLDPWQIPSSLIAEMPASVAL 561
|
90 100 110
....*....|....*....|....*....|....*
gi 15597873 98 NTDwfveeQLVVWEEGEQLLFAARDPLSPSIRETL 132
Cdd:PRK11234 562 HYA-----VLPLREEGDELIVASEDGISPVSLAAL 591
|
|
| T2SSE_N |
pfam05157 |
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the ... |
52-164 |
1.94e-10 |
|
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the N-terminus of members of the Type II secretion system protein E. Proteins in this subfamily are typically involved in Type 4 pilus biogenesis, though some are involved in other processes; for instance aggregation in Myxococcus xanthus. The structure of this domain is now known.
Pssm-ID: 428339 [Multi-domain] Cd Length: 108 Bit Score: 58.12 E-value: 1.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 52 LVRSGAISENTLMQVLAEQLRLPLVGDDLRKPSEEsiaaflLSTPINTDWFVEEQLVVW-EEGEQLLFAARDPLSPSIRE 130
Cdd:pfam05157 1 LVELGLLSEEQLAQALAEQLGLPFVDLEALEIDPE------LLRLLPREFARRHRVLPLrEDGGTLVVAVADPLDLALLD 74
|
90 100 110
....*....|....*....|....*....|....
gi 15597873 131 TLGyFYPERSIQAVLCRSQDLDGWLEHSLDLARQ 164
Cdd:pfam05157 75 ELR-FLTGKRVEPVLATPSDIRRALERLYGSEES 107
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
325-435 |
2.52e-08 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 55.96 E-value: 2.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 325 ILVTGPTGSGKSTTLYGALEEINDGV--RKLISVEDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDPDVIMIGEIRD 402
Cdd:PRK13833 147 IVISGGTGSGKTTLANAVIAEIVASApeDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEVRD 226
|
90 100 110
....*....|....*....|....*....|....
gi 15597873 403 lETAEIAVQSSLTGHL-VLSTLHTNDAVSAFTRL 435
Cdd:PRK13833 227 -GAALTLLKAWNTGHPgGVTTIHSNTAMSALRRL 259
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
325-451 |
3.04e-08 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 55.67 E-value: 3.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 325 ILVTGPTGSGKST---TLYGALEEindgVRKLISVEDPVEYQVPNITQVQ-VHADIGLTFAAA-----LRSILRQDPDVI 395
Cdd:PRK13851 165 MLLCGPTGSGKTTmskTLISAIPP----QERLITIEDTLELVIPHENHVRlLYSKNGAGLGAVtaehlLQASLRMRPDRI 240
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 15597873 396 MIGEIRDlETAEIAVQSSLTGHL-VLSTLHTNDAVSAFTRLIDmgvepfLVASPVRG 451
Cdd:PRK13851 241 LLGEMRD-DAAWAYLSEVVSGHPgSISTIHGANPVQGFKKLFS------LVKSSAQG 290
|
|
| nfrB |
PRK15489 |
glycosyl transferase family protein; |
19-76 |
1.53e-05 |
|
glycosyl transferase family protein;
Pssm-ID: 237974 [Multi-domain] Cd Length: 703 Bit Score: 47.81 E-value: 1.53e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 15597873 19 LGQRLLERGLVSGQELERALDLQRRLGGRLGGILVRSGAISENTLMQVLAEQLRLPLV 76
Cdd:PRK15489 493 LGELLLTWQAVTPEQLQAALAEQQTRGKPLGRILLSQGWLDDETLAEAIAFQADLPRV 550
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
321-400 |
7.81e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 40.05 E-value: 7.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 321 PHGIILVTGPTGSGKSTTLYGALEEINDGVRKLISV-------EDPVEYQVPNITQVQVHADIGLTFAAALRSILRQDPD 393
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIdgedileEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80
|
....*..
gi 15597873 394 VIMIGEI 400
Cdd:smart00382 81 VLILDEI 87
|
|
| PRK13900 |
PRK13900 |
type IV secretion system ATPase VirB11; Provisional |
325-438 |
2.24e-03 |
|
type IV secretion system ATPase VirB11; Provisional
Pssm-ID: 184381 Cd Length: 332 Bit Score: 40.51 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597873 325 ILVTGPTGSGKSTTLYGALEEINDGVRkLISVEDPVEYQVPN-ITQVQVHADIG------LTFAAALRSILRQDPDVIMI 397
Cdd:PRK13900 163 IIISGGTSTGKTTFTNAALREIPAIER-LITVEDAREIVLSNhPNRVHLLASKGgqgrakVTTQDLIEACLRLRPDRIIV 241
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 15597873 398 GEIRDLEtAEIAVQSSLTGHL-VLSTLHTNDAVSAFTRLIDM 438
Cdd:PRK13900 242 GELRGAE-AFSFLRAINTGHPgSISTLHADSPAMAIEQLKLM 282
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
306-351 |
5.18e-03 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 39.00 E-value: 5.18e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 15597873 306 MLPDH---LRRMRAWVAEPHGIILVTGPTGSGKSTTLYGALEEINDGVR 351
Cdd:COG3267 24 LSPSHreaLARLEYALAQGGGFVVLTGEVGTGKTTLLRRLLERLPDDVK 72
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
317-337 |
5.61e-03 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 35.65 E-value: 5.61e-03
|
| |
