|
Name |
Accession |
Description |
Interval |
E-value |
| PRK12513 |
PRK12513 |
RNA polymerase sigma factor; Provisional |
2-193 |
7.28e-104 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183566 [Multi-domain] Cd Length: 194 Bit Score: 296.99 E-value: 7.28e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 2 HASTSATTAAGSDETLLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTW 81
Cdd:PRK12513 1 HLSGAMSTAAASDEALMLRYRAGDAAAFEALYARHRTGLYRFLLRLARDRALAEDIFQETWLRVIRARAQYQPRARFRTW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 82 LYQIARNRLIDHWRKHGQRQPLQDSYDEQLHAQPDQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAE 161
Cdd:PRK12513 81 LYQIARNLLIDHWRRHGARQAPSLDADEQLHALADDGAAPEQQLSLFRDRRRLQAALETLPDEQREVFLLREHGDLELEE 160
|
170 180 190
....*....|....*....|....*....|..
gi 15598092 162 IATLTQSPLETVKSRFRYAVQKLRRLLAEEVA 193
Cdd:PRK12513 161 IAELTGVPEETVKSRLRYALQKLRELLAEEVA 192
|
|
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
13-193 |
2.64e-49 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 157.85 E-value: 2.64e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 13 SDETLLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLID 92
Cdd:COG1595 3 SDEELLERLRAGDEAAFEELYERYRPRLYRYARRLLGDRADAEDLVQETFLRLWRKLDSFRGRGSFRAWLYRIARNLAID 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 93 HWRKHGQRQPLQDSYDEQLhaqPDQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLET 172
Cdd:COG1595 83 HLRKRRRRRELLDELAEEL---PDEAADPEEALEAEELLEALLAALERLPPRQREVLVLRYLEGLSYAEIAEILGISEGT 159
|
170 180
....*....|....*....|.
gi 15598092 173 VKSRFRYAVQKLRRLLAEEVA 193
Cdd:COG1595 160 VKSRLSRARKKLREALEEEGA 180
|
|
| PRK09652 |
PRK09652 |
RNA polymerase sigma factor RpoE; Provisional |
18-190 |
3.65e-39 |
|
RNA polymerase sigma factor RpoE; Provisional
Pssm-ID: 236608 [Multi-domain] Cd Length: 182 Bit Score: 132.24 E-value: 3.65e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 18 LARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRKH 97
Cdd:PRK09652 1 VERVQRGDRAAFALLVRRYQPRVKRLLSRLTRDPADAEDLVQETFIKAYRALHSFRGGAAFYTWLYRIARNTAINYLRKQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 98 GQRQP-----LQDSYDEQLHAQPDQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLET 172
Cdd:PRK09652 81 GRRPPasdvdAEEAEDFDLADALRDISTPENELLSAELEQRVRAAIESLPEELRTAITLREIEGLSYEEIAEIMGCPIGT 160
|
170
....*....|....*...
gi 15598092 173 VKSRFRYAVQKLRRLLAE 190
Cdd:PRK09652 161 VRSRIFRAREALRAKLQP 178
|
|
| PRK11924 |
PRK11924 |
RNA polymerase sigma factor; Provisional |
17-189 |
5.44e-33 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183384 [Multi-domain] Cd Length: 179 Bit Score: 116.22 E-value: 5.44e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 17 LLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRK 96
Cdd:PRK11924 3 LMPVDATGDKEAFSELFRPHAPDLLRYARRQLGDRALAEDAVQEAFLRAWRKADLFNGKGSARTWLLTIARNVCYDLLRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 97 HGQRQPLQDSyDEQLHAQPDQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSR 176
Cdd:PRK11924 83 RRREKAVLSD-DALEPEFAETAETPEAALLAKDDLARIDRCLDALPVKQREVFLLRYVEGLSYREIAEILGVPVGTVKSR 161
|
170
....*....|...
gi 15598092 177 FRYAVQKLRRLLA 189
Cdd:PRK11924 162 LRRARQLLRECLE 174
|
|
| sigma70-ECF |
TIGR02937 |
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
27-188 |
1.81e-31 |
|
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 111.67 E-value: 1.81e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 27 AAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRKHGQRQPLQDS 106
Cdd:TIGR02937 1 EAFEELYERYLPLVYRYARRYLGDDADAEDLVQEAFLKLLEALDRFDPEGSFKAWLFRIARNLILDYLRRKRRLRRELDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 107 YDEQLHAQPDqgagPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRR 186
Cdd:TIGR02937 81 LEELLDSDPS----PEEELEQEEEREALREALEKLPEREREVLVLRYLEGLSYKEIAEILGISVGTVKRRLKRARKKLRE 156
|
..
gi 15598092 187 LL 188
Cdd:TIGR02937 157 LL 158
|
|
| PRK09638 |
PRK09638 |
RNA polymerase sigma factor SigY; Reviewed |
14-186 |
2.01e-29 |
|
RNA polymerase sigma factor SigY; Reviewed
Pssm-ID: 182010 [Multi-domain] Cd Length: 176 Bit Score: 107.03 E-value: 2.01e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 14 DET-LLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLID 92
Cdd:PRK09638 4 DEKeLIQKAKKGDDAALTTLFQQHYSFLYKYLLKLTLDPDLAEDLVQETMLKAIENLSSFQGRSKFSTWLISIASRLYKD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 93 HWRKHGQRQPLQDSY-DEQLHAQPDQGAGPeqqlslSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLE 171
Cdd:PRK09638 84 HLRKQKREKLRLQRAkEETLRKEKWEAAIK------GAEWSEMLDALSKLDPEFRAPVILKHYYGYTYEEIAKMLNIPEG 157
|
170
....*....|....*
gi 15598092 172 TVKSRFRYAVQKLRR 186
Cdd:PRK09638 158 TVKSRVHHGIKQLRK 172
|
|
| PRK12519 |
PRK12519 |
RNA polymerase sigma factor; Provisional |
4-192 |
3.98e-29 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237125 [Multi-domain] Cd Length: 194 Bit Score: 106.68 E-value: 3.98e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 4 STSATTAAGSDETLLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLY 83
Cdd:PRK12519 6 SAPTSLSSRSDAELFSALKAGQSAALGVLYDRHAGLVYGLALKILGNSQEAEDLTQEIFLSLWRKSSYDPKRGSLSSYLL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 84 QIARNRLIDHWRKHGQRQPLQDSYDEQLHAQPdQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIA 163
Cdd:PRK12519 86 TLTRSRAIDRLRSRRSRQRLLERWQQELLGEA-SEDTPLEQASLAERSQRVQTALAQLPESQRQVLELAYYEGLSQSEIA 164
|
170 180
....*....|....*....|....*....
gi 15598092 164 TLTQSPLETVKSRFRYAVQKLRRLLAEEV 192
Cdd:PRK12519 165 KRLGIPLGTVKARARQGLLKLRELLQDLL 193
|
|
| PRK12515 |
PRK12515 |
RNA polymerase sigma factor; Provisional |
8-188 |
8.23e-27 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183567 [Multi-domain] Cd Length: 189 Bit Score: 100.58 E-value: 8.23e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 8 TTAAGSDETLLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIAR 87
Cdd:PRK12515 3 AAQATTDEMLLARIAQGDRTAMQTLYGRHHVRVYRFGLRLVRDEQTAEDLVSEVFLDVWRQAGQFEGRSQVSTWLLSIAR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 88 NRLIDHWRkhgqRQPLQDSYDEQLHAQPDQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQ 167
Cdd:PRK12515 83 FKALSALR----RRKHEEIDDEAAAAIEDGADTPEVALQKSDTSAALRACLAKLSPAHREIIDLVYYHEKSVEEVGEIVG 158
|
170 180
....*....|....*....|.
gi 15598092 168 SPLETVKSRFRYAVQKLRRLL 188
Cdd:PRK12515 159 IPESTVKTRMFYARKKLAELL 179
|
|
| PRK11922 |
PRK11922 |
RNA polymerase sigma factor; Provisional |
1-192 |
2.33e-23 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237024 [Multi-domain] Cd Length: 231 Bit Score: 92.72 E-value: 2.33e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 1 MHASTSATTAagSDETLLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRT 80
Cdd:PRK11922 6 ASRPPPLSAA--SDRELVARVLAGDEAAFEALMRRHNRRLYRTARAILRNDAEAEDVVQEAYLRAFRALGTFRGDASLST 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 81 WLYQIARN----RLIDHWRKHGQRQPLQDSYDEQLHAQP--DQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAH 154
Cdd:PRK11922 84 WLSRIVLNealgRLRRRRRLVNLAEMVMASTIAGGERTPlaDPAEDPERAAARREIRALLERAIDALPDAFRAVFVLRVV 163
|
170 180 190
....*....|....*....|....*....|....*...
gi 15598092 155 GELELAEIATLTQSPLETVKSRFRYAVQKLRRLLAEEV 192
Cdd:PRK11922 164 EELSVEETAQALGLPEETVKTRLHRARRLLRESLAREI 201
|
|
| SigM_subfam |
TIGR02950 |
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a ... |
33-188 |
7.43e-22 |
|
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot:
Pssm-ID: 274361 [Multi-domain] Cd Length: 154 Bit Score: 86.74 E-value: 7.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 33 YQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGrASFRTWLYQIARNRLIDHWRKHGQRQPLQDSYDEQLH 112
Cdd:TIGR02950 1 YREYMHDVFRYLYRLTKDKHLAEDLLQETFLKAYIHLHSFKD-SSIKPWLFRIARNAFIDWYRKDKKIQTIDDDAIGDLE 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15598092 113 AQPDQgaGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRRLL 188
Cdd:TIGR02950 80 QHPVE--SPEHHLLIKIEQEEITHHLSRLPENYRTVLILREFKEFSYKEIAELLNLSLAKVKSNLFRARKELKKLL 153
|
|
| PRK12518 |
PRK12518 |
RNA polymerase sigma factor; Provisional |
17-191 |
7.73e-22 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237124 [Multi-domain] Cd Length: 175 Bit Score: 87.47 E-value: 7.73e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 17 LLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQtELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRK 96
Cdd:PRK12518 1 LILRCQRGDRQSFRQLYRRYQQKVRSTLYQLCGR-ELLDDLVQEVFLRVWKGLPKLRNPAYFSTWLYRITWNVATDARRQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 97 HGQRQPLQDSYDEQLHAQPDQGAGPEQQLSLSrdgERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSR 176
Cdd:PRK12518 80 FAQRPSRIQDDSLNDQPSRPSDTPDLMQLHYQ---DLVQQGLQTLSLEHRAVLVLHDLEDLPQKEIAEILNIPVGTVKSR 156
|
170
....*....|....*
gi 15598092 177 FRYAVQKLRRLLAEE 191
Cdd:PRK12518 157 LFYARRQLRKFLQQQ 171
|
|
| PRK05602 |
PRK05602 |
RNA polymerase sigma factor; Reviewed |
13-191 |
5.12e-21 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 235530 [Multi-domain] Cd Length: 186 Bit Score: 85.47 E-value: 5.12e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 13 SDETLLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQ-PQGRASFRTWLYQIARNRLI 91
Cdd:PRK05602 6 PDEELLARVAAGDPAAFRVLVARKLPRLLALATRMLGDPAEAEDVAQETFLRIWKQAPSwRPGEARFDTWLHRVVLNLCY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 92 DHWRKHgqrqplQDSYDEQLHAQPDQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLE 171
Cdd:PRK05602 86 DRLRRR------REVPVEDAPDVPDPAPGPDAGLEARQRARRVEQALAALPERQREAIVLQYYQGLSNIEAAAVMDISVD 159
|
170 180
....*....|....*....|
gi 15598092 172 TVKSRFRYAVQKLRRLLAEE 191
Cdd:PRK05602 160 ALESLLARGRRALRAQLADL 179
|
|
| PRK09415 |
PRK09415 |
RNA polymerase factor sigma C; Reviewed |
50-192 |
1.13e-19 |
|
RNA polymerase factor sigma C; Reviewed
Pssm-ID: 181835 [Multi-domain] Cd Length: 179 Bit Score: 81.72 E-value: 1.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 50 QTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLID-----HWRKhgqRQPLQDSYDEQlhaqPDQGAGPEQQ 124
Cdd:PRK09415 39 NKEVAEDLTQEIFVKCYKSLHTYKGKSSLKTWLYRIAINHCKDylkswHNKK---VIVTEDIFTYM----ESQKESVEEE 111
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15598092 125 LSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRRLLAEEV 192
Cdd:PRK09415 112 VIQNAEDERLASAVMSLPIKYREVIYLFYYEELSIKEIAEVTGVNENTVKTRLKKAKELLKKGLEEEV 179
|
|
| Sig70_bacteroi1 |
TIGR02985 |
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors ... |
28-185 |
1.18e-19 |
|
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Pssm-ID: 274376 [Multi-domain] Cd Length: 161 Bit Score: 81.07 E-value: 1.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 28 AFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRkhgqRQPLQDSY 107
Cdd:TIGR02985 2 AFEQLYRRYYPKLCAFARRYVKDEEDAEDIVQDVFLKLWENRETLEISESIKAYLFTIVKNRCLNYLR----HKQVEEKY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 108 DEQL---HAQPDQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKL 184
Cdd:TIGR02985 78 QEELaeiEERELSEADPEEELEAKELEEIIEEAIEKLPEQCREIFILSRFEGLSNKEIAEELGISVKTVEYHITKALKFL 157
|
.
gi 15598092 185 R 185
Cdd:TIGR02985 158 R 158
|
|
| PRK12538 |
PRK12538 |
RNA polymerase sigma factor; Provisional |
14-188 |
5.56e-18 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139048 [Multi-domain] Cd Length: 233 Bit Score: 78.36 E-value: 5.56e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 14 DETLLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQ-GRASFRTWLYQIARNRLID 92
Cdd:PRK12538 50 DEELLDRLATDDEAAFRLLVERHIDRAYAIALRIVGNRADAEDVVQDTMLKVWTHRGRWQhGRAKFSTWLYRVVSNRCID 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 93 HwrkhgQRQPLQDSYD---EQLHAQPDQGAGPEQ-QLSLsrdgeRLQSALETLPEEQREVFLMRAHGELELAEIATLTQS 168
Cdd:PRK12538 130 L-----RRKPRTENVDavpEVADGKPDAVSVIERnELSD-----LLEAAMQRLPEQQRIAVILSYHENMSNGEIAEVMDT 199
|
170 180
....*....|....*....|
gi 15598092 169 PLETVKSRFRYAVQKLRRLL 188
Cdd:PRK12538 200 TVAAVESLLKRGRQQLRDLL 219
|
|
| PRK09640 |
PRK09640 |
RNA polymerase sigma factor SigX; Reviewed |
13-190 |
3.22e-17 |
|
RNA polymerase sigma factor SigX; Reviewed
Pssm-ID: 236603 [Multi-domain] Cd Length: 188 Bit Score: 75.75 E-value: 3.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 13 SDETLLARYRKG---DSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNR 89
Cdd:PRK09640 9 NDEELVARVHVElfhVTRAYEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSITYNE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 90 LIDHWRKHGQRQPLQD--SYDEQLHAQPDQGAGPEQQLSLSRdgerlqsALETLPEEQREVFLMRAHGELELAEIATLTQ 167
Cdd:PRK09640 89 CITQYRKERRKRRLMDalSLDPLEEASEEKAPKPEERGGLDR-------WLVHVNPIDREILVLRFVAELEFQEIADIMH 161
|
170 180
....*....|....*....|...
gi 15598092 168 SPLETVKSRFRYAVQKLRRLLAE 190
Cdd:PRK09640 162 MGLSATKMRYKRALDKLREKFAG 184
|
|
| PRK09641 |
PRK09641 |
RNA polymerase sigma factor SigW; Provisional |
17-188 |
4.15e-17 |
|
RNA polymerase sigma factor SigW; Provisional
Pssm-ID: 182012 [Multi-domain] Cd Length: 187 Bit Score: 75.12 E-value: 4.15e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 17 LLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWL-SLIRSESQPQGRaSFRTWLYQIARNRLIDHWR 95
Cdd:PRK09641 8 LIKQVKKGDQNAFAELVDLYKDKIYQLCYRMLGNRHEAEDAAQEAFIrAYVNIDSYDINR-KFSTWLYRIATNLTIDRLR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 96 KhgqRQP-------LQDSYDEQLHAQ-PDQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQ 167
Cdd:PRK09641 87 K---RKPdyyldaeVAGTEGLTMYSQlAADDALPEEQVVSLELQETIQEAILQLPEKYRTVIVLKYIEDLSLKEISEILD 163
|
170 180
....*....|....*....|.
gi 15598092 168 SPLETVKSRFRYAVQKLRRLL 188
Cdd:PRK09641 164 LPVGTVKTRIHRGREALRKQL 184
|
|
| PRK09643 |
PRK09643 |
RNA polymerase sigma factor SigM; Reviewed |
1-189 |
1.20e-16 |
|
RNA polymerase sigma factor SigM; Reviewed
Pssm-ID: 236604 [Multi-domain] Cd Length: 192 Bit Score: 73.98 E-value: 1.20e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 1 MHASTSATTAAGSDETLLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRT 80
Cdd:PRK09643 1 MGYCPAVGFGERSDAELLAAHVAGDRYAFGELFRRHHRRLWAVARRTSGTREDAADALQDAMLSAHRAAGSFRGDAAVSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 81 WLYQIARNRLIDHWRKHGQRQ--PLQDSYDEqlhaqPDQGAGPEQQLSLSRDgerLQSALETLPEEQREVFLMRAHGELE 158
Cdd:PRK09643 81 WLHRIVVNACLDRLRRAKARPtvPLDDVYPV-----AQLERDPTARVETALA---VQRALMRLPVEQRAALVAVDMQGYS 152
|
170 180 190
....*....|....*....|....*....|.
gi 15598092 159 LAEIATLTQSPLETVKSRFRYAVQKLRRLLA 189
Cdd:PRK09643 153 VADAARMLGVAEGTVKSRCARGRARLAELLG 183
|
|
| PRK12543 |
PRK12543 |
RNA polymerase sigma factor; Provisional |
22-185 |
2.41e-16 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183582 [Multi-domain] Cd Length: 179 Bit Score: 72.84 E-value: 2.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 22 RKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARnRLIDHWRKHGQRQ 101
Cdd:PRK12543 2 LSGDQEAFSEIYDVTIQEVYKTVHFLVEDKQDVDDVVNEIYIQLWESLRKYDSNRPFRFWLIGLVI-KQIHSWRRKRWRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 102 pLQDSYDEQLHAQPDQGAGPEQQLSLSRDGErLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAV 181
Cdd:PRK12543 81 -FRIFEKAEEQRKPVSIDFSEDVLSKESNQE-LIELIHKLPYKLRQVIILRYLHDYSQEEIAQLLQIPIGTVKSRIHAAL 158
|
....
gi 15598092 182 QKLR 185
Cdd:PRK12543 159 KKLR 162
|
|
| SigZ |
TIGR02959 |
RNA polymerase sigma factor, SigZ family; This family of RNA polymerase sigma factors is a ... |
33-189 |
8.88e-16 |
|
RNA polymerase sigma factor, SigZ family; This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937). One of these is designated as SigZ in B. subtilis (Swiss_Prot: SIGZ_BACSU). Interestingly, this group has a very sporatic distribution, B. subtilis, for instance, being the only sequenced strain of Bacilli with a member. Dechloromonas aromatica RCB appears to have two of these sigma factors. A member appears on a plasmid found in Photobacterium profundum SS9 and Vibrio fischeri ES114 (where a second one is chromosomally encoded).
Pssm-ID: 132004 [Multi-domain] Cd Length: 170 Bit Score: 71.24 E-value: 8.88e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 33 YQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRKHGQRQPLQDSydeQLH 112
Cdd:TIGR02959 1 WDEFRSELKAFIKSRVSDASDVEDLLQEVFIKIHRNLPSLKDGQKIQSWLYQIARNTIIDFYRSKSRSVELPES---LLA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 113 AQPDQGAGPEQQLSlsrdgERLQSALETLPEEQREVflmrahgeLELAEIATLTQS--------PLETVKSRFRYAVQKL 184
Cdd:TIGR02959 78 ADSAREETFVKELS-----QCIPPMIKELPDEYREA--------IRLTELEGLSQQeiaeklglSLSGAKSRVQRGRKKL 144
|
....*
gi 15598092 185 RRLLA 189
Cdd:TIGR02959 145 KELLE 149
|
|
| PRK09639 |
PRK09639 |
RNA polymerase sigma factor SigX; Provisional |
29-192 |
9.01e-16 |
|
RNA polymerase sigma factor SigX; Provisional
Pssm-ID: 236602 [Multi-domain] Cd Length: 166 Bit Score: 71.13 E-value: 9.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 29 FEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSesQPQGRASFRTWLYQIARNRLIDHWR--KHGQRQPLQDS 106
Cdd:PRK09639 5 FEDLFEQYYPDVVQQIFYIVKDRTQAEDLAQEVFLRLYRS--DFKGIENEKGWLIKSARNVAYNYLRseKRRRARILGEF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 107 YDEQLHAQPDqgagPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGeLELAEIATLTQSPLETVKSRFRYAVQKLRR 186
Cdd:PRK09639 83 QWQEVDNEPS----PEEIWIRKEEITKVQEVLAKMTERDRTVLLLRFSG-YSYKEIAEALGIKESSVGTTLARAKKKFRK 157
|
....*.
gi 15598092 187 LLAEEV 192
Cdd:PRK09639 158 IYEQME 163
|
|
| PRK08241 |
PRK08241 |
RNA polymerase subunit sigma-70; |
16-191 |
1.30e-15 |
|
RNA polymerase subunit sigma-70;
Pssm-ID: 236196 [Multi-domain] Cd Length: 339 Bit Score: 73.43 E-value: 1.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 16 TLLARYRKGDSAAFEVLYQRHRQGL----YRFLcglaGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLI 91
Cdd:PRK08241 8 ALLARAAAGDRDAFAALVEPHRRELlahcYRML----GSVHDAEDAVQETLLRAWRGYDRFEGRSSLRTWLYRIATNVCL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 92 DHWRKHGQR-------QPLQDSYDEqLHAQPD--------------QGAGPEQQLSlSRDGERLQ--SALETLPEEQREV 148
Cdd:PRK08241 84 DALEGRARRplptdlgAPAADPVDE-LVERPEvpwlepypdalldpAAADPAARVV-ARESVRLAfvAALQHLPPRQRAV 161
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 15598092 149 FLMRAHGELELAEIATLTQSPLETVKSrfryAVQKLRRLLAEE 191
Cdd:PRK08241 162 LILRDVLGWSAAEVAELLDTSVAAVNS----ALQRARATLAER 200
|
|
| PRK12533 |
PRK12533 |
RNA polymerase sigma factor; Provisional |
40-194 |
2.66e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237129 [Multi-domain] Cd Length: 216 Bit Score: 70.91 E-value: 2.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 40 LYRFLCGLAGQtelADEIYQETWLSLIRSESQPQGrASFRTWLYQIARNRLIDHW--RKHGQRQPLQDSYD--EQLHAQP 115
Cdd:PRK12533 34 LARWLCGNASD---ADDVVQEACMRALRFFDSFRG-DNARPWLLAIVRHTWYSEWrrRANAHEVAAPDTLDdaDSLDDWQ 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15598092 116 DQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRRLLAEEVAV 194
Cdd:PRK12533 110 PAGEDPLALLLRAEDVRLVNAALAKLPVEYREVLVLRELEDMSYREIAAIADVPVGTVMSRLARARRRLAALLGGASAA 188
|
|
| Sig-70_gvs1 |
TIGR02989 |
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma ... |
28-192 |
4.10e-15 |
|
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Pssm-ID: 274379 [Multi-domain] Cd Length: 159 Bit Score: 69.27 E-value: 4.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 28 AFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRKHGQRQPLqdsY 107
Cdd:TIGR02989 2 AFVRLLTRHERALRAFVRSLVADRDDVDDVLQETFVVAWRKFDQFDPGTNFVAWARGIARNKVLNYRRKLGRDRLV---F 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 108 DEQLHAQPDQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQspleTVKSRFRYAVQKLRRL 187
Cdd:TIGR02989 79 DDDLLEALAAEAEPTEAERLSDDRQALEGCLEKLPERQRELLDLRYQRGQKATALAEQTG----RTVNAVYKALQRIRVS 154
|
....*
gi 15598092 188 LAEEV 192
Cdd:TIGR02989 155 LRECV 159
|
|
| PRK12534 |
PRK12534 |
RNA polymerase sigma factor; Provisional |
6-188 |
5.09e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183576 [Multi-domain] Cd Length: 187 Bit Score: 69.70 E-value: 5.09e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 6 SATTAAGSDET--LLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQ--PQgRASFRTW 81
Cdd:PRK12534 2 SAIPGHDDDETgrLLTATAGGDRHAFEALYRQTSPKLFGVCLRMIPQRAEAEEVLQDVFTLIWHKAGQfdPS-RARGLTW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 82 LYQIARNRLIDHWRKHG-QRQPLQDSYDEQLhaqPDQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELA 160
Cdd:PRK12534 81 LAMIARNKAIDHLRANApQRRNVALDDAGEL---RAADASPLERTERASTRRRIDHCLAELEPPRSELIRTAFFEGITYE 157
|
170 180
....*....|....*....|....*...
gi 15598092 161 EIATLTQSPLETVKSRFRYAVQKLRRLL 188
Cdd:PRK12534 158 ELAARTDTPIGTVKSWIRRGLAKLKACL 185
|
|
| PRK12524 |
PRK12524 |
RNA polymerase sigma factor; Provisional |
10-175 |
5.87e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183573 [Multi-domain] Cd Length: 196 Bit Score: 69.53 E-value: 5.87e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 10 AAGSDETLLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQ-PQGRASFRTWLYQIARN 88
Cdd:PRK12524 9 SDVSDEALLVLYANGDPAAARALTLRLAPRALAVATRVLGDRAEAEDVTQEAMLRLWRIAPDwRQGEARVSTWLYRVVCN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 89 RLIDHWRKHGQRQPLQDSYDEQlhaqPDQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQS 168
Cdd:PRK12524 89 LCTDRLRRRRRASVDLDDAPEP----ADAAPGAEEALIEGDRMRALDAALAALPERQRQAVVLRHIEGLSNPEIAEVMEI 164
|
....*..
gi 15598092 169 PLETVKS 175
Cdd:PRK12524 165 GVEAVES 171
|
|
| algU |
PRK11923 |
RNA polymerase sigma factor AlgU; Provisional |
13-191 |
6.23e-15 |
|
RNA polymerase sigma factor AlgU; Provisional
Pssm-ID: 171347 [Multi-domain] Cd Length: 193 Bit Score: 69.45 E-value: 6.23e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 13 SDETLLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLID 92
Cdd:PRK11923 6 EDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDTAEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTAKN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 93 HWRKHGQRQPLQD------SYDEQLHAQPDQgAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLT 166
Cdd:PRK11923 86 HLVSRGRRPPDSDvssedaEFYDGDHALKDI-ESPERALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVM 164
|
170 180
....*....|....*....|....*...
gi 15598092 167 QSPLETVKSRF---RYAVQKLRRLLAEE 191
Cdd:PRK11923 165 QCPVGTVRSRIfraREAIDKALQPLLQE 192
|
|
| PRK09637 |
PRK09637 |
RNA polymerase sigma factor SigZ; Provisional |
30-190 |
9.17e-15 |
|
RNA polymerase sigma factor SigZ; Provisional
Pssm-ID: 236601 [Multi-domain] Cd Length: 181 Bit Score: 68.86 E-value: 9.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 30 EVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRKHGQRQPLQdsyDE 109
Cdd:PRK09637 4 ESIWSEYKAQLKAFLHSRVSNEADVDDLLQEVLIKTHSNLHSLKDGSSIKSWLYQIANNTIIDFYRKKNRSEELP---DD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 110 QLHAQPDQGAGPEQQLSlsrdgERLQSALETLPEEQREVflmrahgeLELAEIATLTQS--------PLETVKSRFRYAV 181
Cdd:PRK09637 81 LLFEDEEREENAKKELA-----PCLRPFIDALPEKYAEA--------LRLTELEGLSQKeiaeklglSLSGAKSRVQRGR 147
|
....*....
gi 15598092 182 QKLRRLLAE 190
Cdd:PRK09637 148 VKLKELLEG 156
|
|
| PRK12531 |
PRK12531 |
RNA polymerase sigma factor; Provisional |
18-191 |
1.46e-14 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105726 [Multi-domain] Cd Length: 194 Bit Score: 68.80 E-value: 1.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 18 LARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQG-RASFRTWLYQIARNRLIDHWRK 96
Cdd:PRK12531 18 MEKVKSRDKQAFALVFSYYAPKLKQFAMKHVGNEQVAMEMVQETMSTVWQKAHLFDGqKSALSTWIYTIIRNLCFDLLRK 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 97 hgqrqplQDSYDEQLHAQ---------PD--QGAGPEQQLSlsrdGERLQSALETLPEEQREVFLMRAHGELELAEIATL 165
Cdd:PRK12531 98 -------QKGKDLHIHADdiwpsdyypPDlvDHYSPEQDML----KEQVMKFLDRLPKAQRDVLQAVYLEELPHQQVAEM 166
|
170 180
....*....|....*....|....*.
gi 15598092 166 TQSPLETVKSRFRYAVQKLRRLLAEE 191
Cdd:PRK12531 167 FDIPLGTVKSRLRLAVEKLRHSMDAE 192
|
|
| PRK09645 |
PRK09645 |
ECF RNA polymerase sigma factor SigL; |
25-190 |
2.85e-14 |
|
ECF RNA polymerase sigma factor SigL;
Pssm-ID: 236605 [Multi-domain] Cd Length: 173 Bit Score: 67.41 E-value: 2.85e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 25 DSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETwlsLIRSESQPQGRA----SFRTWLYQIARNRLIDHWRKHGQR 100
Cdd:PRK09645 7 EAALMRALYDEHAAPLWRYALRLTGDRARAEDVVQET---LLRAWQHPEVLAdtgrSARAWLFTVARNLVIDERRSARAR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 101 QPlqDSYDEQLHAqPDQGAGPEQQLSLsrDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYA 180
Cdd:PRK09645 84 PV--EGGDDVLGV-PEQSAPDEVDRAL--DRLLVADALAQLSPEHRAVLVRSYYRGWSTAQIAADLGIPEGTVKSRLHYA 158
|
170
....*....|
gi 15598092 181 VQKLRRLLAE 190
Cdd:PRK09645 159 LRALRLALQE 168
|
|
| PRK13919 |
PRK13919 |
putative RNA polymerase sigma E protein; Provisional |
13-190 |
3.42e-14 |
|
putative RNA polymerase sigma E protein; Provisional
Pssm-ID: 184395 [Multi-domain] Cd Length: 186 Bit Score: 67.63 E-value: 3.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 13 SDETLLARYRKGDSAAFEVLYQRHRQ---GLYRFLcGLAG--QTELADEIYQETWLSliRSESQPQgRASFRTWLYQIAR 87
Cdd:PRK13919 9 SDEALLALVARGEEEALRALFRRYAGaflALARRM-GLDGaaAEDVVQEVFIRVWKK--AKEFDPR-RGSARAWLLALAH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 88 NRLIDHWRKHGQR-QPLQ-DSYDEQLHAQPDQGAGPEQQLslsrDGERLQSALETLPEEQREVFLMRAHGELELAEIATL 165
Cdd:PRK13919 85 HAAVDHVRRRAARpQPLEpDEREPEAFDLPGPGLDEEGHL----DRTRLGRALKALSPEERRVIEVLYYQGYTHREAAQL 160
|
170 180
....*....|....*....|....*
gi 15598092 166 TQSPLETVKSRFRYAVQKLRRLLAE 190
Cdd:PRK13919 161 LGLPLGTLKTRARRALSRLKEVLRE 185
|
|
| PRK12522 |
PRK12522 |
RNA polymerase sigma factor; Provisional |
30-192 |
4.91e-14 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183571 [Multi-domain] Cd Length: 173 Bit Score: 66.82 E-value: 4.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 30 EVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRKHGQ-RQPLQDSYD 108
Cdd:PRK12522 6 EELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITTICVRTFYDFYRKKKRwKDRILDLFH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 109 EQLHAQ---PDQGAGPEQQLSlSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLR 185
Cdd:PRK12522 86 KEDGGEiefADDVNISEEFIQ-KVEAEMIREVIQLLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAKKQMR 164
|
....*..
gi 15598092 186 RLLAEEV 192
Cdd:PRK12522 165 EHLEGFV 171
|
|
| PRK09644 |
PRK09644 |
RNA polymerase sigma factor SigM; Provisional |
30-194 |
7.87e-14 |
|
RNA polymerase sigma factor SigM; Provisional
Pssm-ID: 170033 [Multi-domain] Cd Length: 165 Bit Score: 66.06 E-value: 7.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 30 EVLYQRHRQGLYRFLCGLAGQTELADEIYQETWL-SLIRSESQPQGRAsfRTWLYQIARNRLIDHWRKHGQRQPLQDSYD 108
Cdd:PRK09644 4 EEIYKMYINDVYRYLFSLTKSHHAAEDLLQETFYrAYIYLEDYDNQKV--KPWLFKVAYHTFIDFVRKEKKVSFVGTDEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 109 EQLHAQpdqgaGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRRLL 188
Cdd:PRK09644 82 EAIQAE-----STEEYVVAKNSYEKLIQIIHTLPVIEAQAILLCDVHELTYEEAASVLDLKLNTYKSHLFRGRKRLKALL 156
|
....*.
gi 15598092 189 AEEVAV 194
Cdd:PRK09644 157 KEEKSQ 162
|
|
| PRK12540 |
PRK12540 |
RNA polymerase sigma factor; Provisional |
40-191 |
8.39e-14 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183579 [Multi-domain] Cd Length: 182 Bit Score: 66.53 E-value: 8.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 40 LYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRKhgQRQPLQD---SYDEQLHAQPD 116
Cdd:PRK12540 18 LRAFAISLSGNGDRADDLVQETLLRALANIDSFQPGSNLPAWLFTILRNLFRSDYRK--RRREVEDadgSYAKTLKSQPG 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15598092 117 QGAgpeqqlslSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRRLLAEE 191
Cdd:PRK12540 96 QNA--------HLEFEEFRAALDKLPQDQREALILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSALLYVD 162
|
|
| Sig70_famx1 |
TIGR02943 |
RNA polymerase sigma-70 factor, TIGR02943 family; This group of sigma factors are members of ... |
52-182 |
1.62e-13 |
|
RNA polymerase sigma-70 factor, TIGR02943 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Pssm-ID: 274359 [Multi-domain] Cd Length: 188 Bit Score: 65.56 E-value: 1.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 52 ELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRKHGQRQPLQDSYDEQL----------------HAQP 115
Cdd:TIGR02943 27 DLAEDAVQETLLAALSHRDSFAGRSALKTWLFAILKNKIIDALRAKGREVKVSDLDDELDdeafnalftqnghwaqHGQP 106
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 116 DQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIA---TLTQSPLETVKSRFRYAVQ 182
Cdd:TIGR02943 107 QHWNTPEKQLENKEFWEVFEACLYHLPEQTARVFMMREVLGFESDEICqelEISTSNCHVLLYRARLSLR 176
|
|
| PRK09649 |
PRK09649 |
RNA polymerase sigma factor SigC; Reviewed |
5-184 |
1.71e-13 |
|
RNA polymerase sigma factor SigC; Reviewed
Pssm-ID: 137458 [Multi-domain] Cd Length: 185 Bit Score: 65.45 E-value: 1.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 5 TSATTAAGSDETLLARyrKGDSAAFEVLYQRHRQGLYRFLCGLAGQTElADEIYQETWLSLIRSESQPQGRASFRTWLYQ 84
Cdd:PRK09649 4 TASDDEAVTALALSAA--KGNGRALEAFIKATQQDVWRFVAYLSDVGS-ADDLTQETFLRAIGAIPRFSARSSARTWLLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 85 IARNRLIDHWRkHGQRQPlqdsydeqlhaQPDQGAGPEQQLSLSRDGERLQSALET------LPEEQREVFLMRAHGELE 158
Cdd:PRK09649 81 IARHVVADHIR-HVRSRP-----------RTTRGARPEHLIDGDRHARGFEDLVEVttmiadLTTDQREALLLTQLLGLS 148
|
170 180
....*....|....*....|....*.
gi 15598092 159 LAEIATLTQSPLETVKSRFRYAVQKL 184
Cdd:PRK09649 149 YADAAAVCGCPVGTIRSRVARARDAL 174
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
32-98 |
1.88e-13 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 62.61 E-value: 1.88e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15598092 32 LYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRS-ESQPQGRA-SFRTWLYQIARNRLIDHWRKHG 98
Cdd:pfam04542 1 LVERYLPLVYSLARRYLGDGADAEDLVQEGFLGLWRAiERFDPERGvSFSTWLYTIIRNAIIDYLRKQR 69
|
|
| PRK12541 |
PRK12541 |
RNA polymerase sigma factor; Provisional |
28-187 |
5.04e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183580 [Multi-domain] Cd Length: 161 Bit Score: 63.80 E-value: 5.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 28 AFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRaSFRTWLYQIARNRLIDHWRKHGQRQPLQdsy 107
Cdd:PRK12541 6 SLEEIYSEHMQDLFRYLLSLTGDSHFAEDLMQETFYRMLVHIDYYKGE-EIRPWLFTIAYNAFIDWYRKEKKYKTTT--- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 108 DEQLHAQPDQGAgpEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRRL 187
Cdd:PRK12541 82 IEEFHLPNVPST--EHEYFIKHEIASWLDSLSSLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKETKSI 159
|
|
| PRK12516 |
PRK12516 |
RNA polymerase sigma factor; Provisional |
40-188 |
3.46e-12 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183568 [Multi-domain] Cd Length: 187 Bit Score: 62.29 E-value: 3.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 40 LYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRKHGQRqpLQDS---YDEQLHAQPD 116
Cdd:PRK12516 23 LRAFAVSLIGRHDRADDLVQDTIMKAWAKQDHFEVGTNMKAWLFTILRNEFYSQMRKRGRE--VQDTdgmFTEQLAVHPS 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15598092 117 QGAgpeqqlslSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRRLL 188
Cdd:PRK12516 101 QYG--------TLDLQDFRAALDQLPDDQREAIILVGASGFAYEEAAEICGCAVGTIKSRVNRARQRLQEIL 164
|
|
| PRK09047 |
PRK09047 |
RNA polymerase factor sigma-70; Validated |
83-190 |
5.26e-12 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 236367 [Multi-domain] Cd Length: 161 Bit Score: 61.14 E-value: 5.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 83 YQIARNRLIDHWRKHGQRQPL----------QDSYD----EQLHAQPDQGAGPEQQLSLSRDGERLQSALETLPEEQREV 148
Cdd:PRK09047 35 QRILQNRIHDWFRRQKVRNTWvslfssfsddDDDDDfdplETLDSADEGAESPADKLERAQVLQLIEEAIQKLPARQREA 114
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 15598092 149 FLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRRLLAE 190
Cdd:PRK09047 115 FLLRYWEDMDVAETAAAMGCSEGSVKTHCSRATHALAKALEA 156
|
|
| PRK12532 |
PRK12532 |
RNA polymerase sigma factor; Provisional |
53-162 |
5.29e-12 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171564 [Multi-domain] Cd Length: 195 Bit Score: 61.87 E-value: 5.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 53 LADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRKHGQRQPLQDSYDEQL-----------------HAQP 115
Cdd:PRK12532 32 LAEDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKVFTLLDDELldeafeshfsqnghwtpEGQP 111
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 15598092 116 DQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEI 162
Cdd:PRK12532 112 QHWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEI 158
|
|
| PRK12514 |
PRK12514 |
RNA polymerase sigma factor; Provisional |
15-188 |
1.67e-11 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105710 [Multi-domain] Cd Length: 179 Bit Score: 60.22 E-value: 1.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 15 ETLLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSL-IRSESQPQGRASFRTWLYQIARNRLIDH 93
Cdd:PRK12514 7 EKLIVRVSLGDRDAFSSLYDATSAKLFGICLRVLKDRSEAEEALQDVYVKIwTKADRFAVSGLSPMTWLITIARNHAIDR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 94 WRKhgqRQPLQDSYDEqLHAQPDQGAGPEQQLSLSRDGERLQSALETLPEEQREVfLMRAHGE-LELAEIATLTQSPLET 172
Cdd:PRK12514 87 LRA---RKAVAVDIDE-AHDLADPSPGPEAEVIAGDEGQRIDACLEELEKDRAAA-VRRAYLEgLSYKELAERHDVPLNT 161
|
170
....*....|....*.
gi 15598092 173 VKSRFRYAVQKLRRLL 188
Cdd:PRK12514 162 MRTWLRRSLLKLRECL 177
|
|
| PRK09647 |
PRK09647 |
RNA polymerase sigma factor SigE; Reviewed |
2-189 |
2.74e-11 |
|
RNA polymerase sigma factor SigE; Reviewed
Pssm-ID: 236606 [Multi-domain] Cd Length: 203 Bit Score: 59.80 E-value: 2.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 2 HASTSATTAAGSDetllARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSES--QPqgrASFR 79
Cdd:PRK09647 7 EPSDELTGTAVFD----ATGDKATMPSWEELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLQnyQP---GTFE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 80 TWLYQIARNRLIDHWRKHGQ--RQPLQDSYDEQlhaqPDQGAGPEQQLSLSRDGERLQSALETLPEEQR-EVFLMRAHGe 156
Cdd:PRK09647 80 GWLHRITTNLFLDMVRRRARirMEALPEDYDRV----PGDEPNPEQIYHDARLDPDLQAALDSLPPEFRaAVVLCDIEG- 154
|
170 180 190
....*....|....*....|....*....|...
gi 15598092 157 LELAEIATLTQSPLETVKSRFRYAVQKLRRLLA 189
Cdd:PRK09647 155 LSYEEIAATLGVKLGTVRSRIHRGRQQLRAALA 187
|
|
| PRK09646 |
PRK09646 |
ECF RNA polymerase sigma factor SigK; |
15-188 |
1.91e-09 |
|
ECF RNA polymerase sigma factor SigK;
Pssm-ID: 182015 [Multi-domain] Cd Length: 194 Bit Score: 54.68 E-value: 1.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 15 ETLLARYRKGDSAAFEVLYQRHRQ---GLYRFLCGLAGQTE-LADEIYQETWLSLIRSESqpqGRASFRTWLYQIARNRL 90
Cdd:PRK09646 18 DALLRRVARGDQDAFAELYDRTSSrvyGLVRRVLRDPGYSEeTTQEVYLEVWRTASRFDP---ARGSALAWLLTLAHRRA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 91 IDHWRK---HGQRQPLqdsYDEQLHAQP-DQGAgpeQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLT 166
Cdd:PRK09646 95 VDRVRSeqaASQREVR---YGARNVDPAfDQVA---EEVEARLERERVRDCLDALTDTQRESVTLAYYGGLTYREVAERL 168
|
170 180
....*....|....*....|..
gi 15598092 167 QSPLETVKSRFRYAVQKLRRLL 188
Cdd:PRK09646 169 AVPLGTVKTRMRDGLIRLRDCL 190
|
|
| SigE-fam_strep |
TIGR02983 |
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors ... |
22-192 |
3.26e-09 |
|
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Pssm-ID: 132028 [Multi-domain] Cd Length: 162 Bit Score: 53.55 E-value: 3.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 22 RKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSL------IRSESQPQGrasfrtWLYQIARNRLIDHWR 95
Cdd:TIGR02983 1 RSATEEEFTAFVAARYPRLLRTAYLLTGDPHEAEDLVQEALVRTyvrwdrIRDPDAPDA------YVRRVLVNLARSRWR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 96 KHGQRQPLQDSYDEQlhAQPDQGAGPEQQLSLSRdgerlqsALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKS 175
Cdd:TIGR02983 75 RRRLLELPTRELPDA--AAPDPAPDVALRAALAR-------ALRRLPARQRAVVVLRYYEDLSEAQVAEALGISVGTVKS 145
|
170
....*....|....*..
gi 15598092 176 RFRYAVQKLRRLLAEEV 192
Cdd:TIGR02983 146 RLSRALARLRELLEEPT 162
|
|
| PRK09648 |
PRK09648 |
RNA polymerase sigma factor ShbA; |
5-152 |
3.40e-09 |
|
RNA polymerase sigma factor ShbA;
Pssm-ID: 236607 [Multi-domain] Cd Length: 189 Bit Score: 53.82 E-value: 3.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 5 TSATTAAGSD-ETLLARYRKGDSAAFE----------VLYQRHRQGlyrflcGLAGQTELADEIYQETWLSLIRS--ESQ 71
Cdd:PRK09648 1 SAAMTDTGEElDALVAEAVAGDRRALRevleiirplvVRYCRARLG------GVERPGLSADDVAQEVCLAVITAlpRYR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 72 PQGRaSFRTWLYQIARNRLIDHWRkhGQRQPLQDSYDEqLHAQPDQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLM 151
Cdd:PRK09648 75 DQGR-PFLAFVYGIAAHKVADAHR--AAGRDKAVPTEE-VPERPSDDAGPEERALRSESSNRMRELLDTLPEKQREILIL 150
|
.
gi 15598092 152 R 152
Cdd:PRK09648 151 R 151
|
|
| PRK09651 |
PRK09651 |
RNA polymerase sigma factor FecI; Provisional |
29-174 |
4.08e-09 |
|
RNA polymerase sigma factor FecI; Provisional
Pssm-ID: 182018 [Multi-domain] Cd Length: 172 Bit Score: 53.28 E-value: 4.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 29 FEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASfRTWLYQIARNRLIDHWRkhgqRQPLQDSYD 108
Cdd:PRK09651 12 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDP-RSFLCTIAKRVMVDLFR----RNALEKAYL 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15598092 109 EQLHAQPDQGA-GPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVK 174
Cdd:PRK09651 87 EMLALMPEGGApSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSVSSVK 153
|
|
| Sigma70_r4 |
cd06171 |
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in ... |
132-185 |
6.99e-09 |
|
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).
Pssm-ID: 100119 [Multi-domain] Cd Length: 55 Bit Score: 49.80 E-value: 6.99e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 15598092 132 ERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLR 185
Cdd:cd06171 2 ERLEEALDKLPEREREVILLRFGEGLSYEEIAEILGISRSTVRQRLHRALKKLR 55
|
|
| PRK12547 |
PRK12547 |
RNA polymerase sigma factor; Provisional |
40-188 |
1.16e-08 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139056 [Multi-domain] Cd Length: 164 Bit Score: 52.19 E-value: 1.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 40 LYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRKHGQRqpLQDS---YDEQLHAQPD 116
Cdd:PRK12547 19 LRAFAVSLSSKHDKAEDLVQDTLMKAWAKQDSFEMGTNLKAWLFTILRNEFYSQMRKRGRE--VQDSdgvFTARVAVHPA 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15598092 117 QGAgpeqqlslSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRRLL 188
Cdd:PRK12547 97 QYG--------SLDLQDFKKALNLLSADQREAIILIGASGFSYEDAAAICGCAVGTIKSRVSRARNRLQELL 160
|
|
| PRK07037 |
PRK07037 |
extracytoplasmic-function sigma-70 factor; Validated |
36-163 |
2.37e-08 |
|
extracytoplasmic-function sigma-70 factor; Validated
Pssm-ID: 180803 [Multi-domain] Cd Length: 163 Bit Score: 51.22 E-value: 2.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 36 HRQGLYRFLCGLAGQTELADEIYQETWLSLirSESQPQgrASFRT---WLYQIARNRLIDHWRKHGQRQPLQDSYDEQLH 112
Cdd:PRK07037 7 NRSMLVKIAARIVGCRSRAEDVVQDAFVKL--VEAPNQ--DAVKQpvaYLFRIVRNLAIDHYRRQALENKYHGDEEDGLD 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 15598092 113 AqPDQGAGPEQQLsLSRDG-ERLQSALETLPEEQREVFLM-RAHGElELAEIA 163
Cdd:PRK07037 83 V-PSPEASPEAAL-INRDTlRHVADALSELPARTRYAFEMyRLHGE-TQKDIA 132
|
|
| PRK12526 |
PRK12526 |
RNA polymerase sigma factor; Provisional |
25-191 |
1.13e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237127 [Multi-domain] Cd Length: 206 Bit Score: 49.80 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 25 DSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSES---QPQGRASfrTWLYQIARNRLIDHWRKHGQRQ 101
Cdd:PRK12526 36 DKQAFTHLFQFFAPKIKRFGIKQLGNEAQANELVQETMSNVWRKAHlynGDKGAAT--TWVYTVMRNAAFDMLRKIKAKK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 102 PLQDSYDEQLHAQPDQGAGPEQ-QLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYA 180
Cdd:PRK12526 114 EQNLGDDIWPIEQALAESQSESeEFSDHLMDKQILSYIEKLPEAQQTVVKGVYFQELSQEQLAQQLNVPLGTVKSRLRLA 193
|
170
....*....|.
gi 15598092 181 VQKLRRLLAEE 191
Cdd:PRK12526 194 LAKLKVQMGEQ 204
|
|
| PRK12520 |
PRK12520 |
RNA polymerase sigma factor; Provisional |
26-162 |
1.45e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237126 [Multi-domain] Cd Length: 191 Bit Score: 49.34 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 26 SAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRKH-------- 97
Cdd:PRK12520 1 MTIAPAQLEALRPHLLRFARLQLRDPALAEDAVSETLLAVLEHPERFAGQSSLKTYLVGILKHKIIDAIRSGrrevrlsl 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15598092 98 --GQRQPLQDSYDEQL----HAQ--PDQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEI 162
Cdd:PRK12520 81 ddADEQSDDDLFDALFaadgHYRepPSDWGDPDAALSRREFFEVLQACVDRLPPRTGRVFMMREWLELETEEI 153
|
|
| PRK12535 |
PRK12535 |
RNA polymerase sigma factor; Provisional |
23-176 |
2.58e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237130 [Multi-domain] Cd Length: 196 Bit Score: 48.74 E-value: 2.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 23 KGDSAAFEVLYQRHRQGLYRFLCGLAGqTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRkHGQRQP 102
Cdd:PRK12535 21 RGDRAALTEFIRETQDDVWRLLAHLGG-HDIADDLTQETYLRVMSALPRFAARSSARTWLLSLARRVWVDNIR-HDMARP 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15598092 103 LQDSYDEQLHAQPDQGAGPEQQLSLSRDgerLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSR 176
Cdd:PRK12535 99 RKSATEYEDAAATTASNETTGSWSEWID---VRTLIDALPPERREALILTQVLGYTYEEAAKIADVRVGTIRSR 169
|
|
| Sigma70_r4_2 |
pfam08281 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
132-184 |
2.69e-07 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.
Pssm-ID: 400535 [Multi-domain] Cd Length: 54 Bit Score: 45.52 E-value: 2.69e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 15598092 132 ERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKL 184
Cdd:pfam08281 2 EALLRALEELPPRQREVFLLRYLEGLSYAEIAELLGISEGTVKSRLSRARKKL 54
|
|
| PRK12546 |
PRK12546 |
RNA polymerase sigma factor; Provisional |
36-188 |
2.70e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139055 [Multi-domain] Cd Length: 188 Bit Score: 48.68 E-value: 2.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 36 HRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRKHGQRQPLQD-SYDEQLHAQ 114
Cdd:PRK12546 16 HLPALRAFAISLTRNVAVADDLVQDTIVKAWTNFDKFQEGTNLRAWLFTILRNTFYSDRRKHKREVPDPEgVHAASLAVK 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15598092 115 PDQgagpeqqlslsrDGeRLQ-----SALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRRLL 188
Cdd:PRK12546 96 PAH------------DG-RLAmsdfrAAFAQLPDEQREALILVGASGFSYEEAAEMCGVAVGTVKSRANRARARLAELL 161
|
|
| PRK12544 |
PRK12544 |
RNA polymerase factor sigma-70; |
31-178 |
2.72e-07 |
|
RNA polymerase factor sigma-70;
Pssm-ID: 183583 [Multi-domain] Cd Length: 206 Bit Score: 48.64 E-value: 2.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 31 VLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRK---HGQRQPLQDS- 106
Cdd:PRK12544 22 VFLEDLRKQMIKFATLQLSDLHLAEDAVQEALIGALKNADSFAGRAAFKTWVFAILKNKIIDLLRQkkrHVSASSLLRDe 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 107 ---------YDEQLHAQPDQG----AGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIAT---LTQSPL 170
Cdd:PRK12544 102 eeeedfeelFDESGHWQKDERpqawGNPEESLEQEQFWRIFEACLDGLPAKYARVFMMREFIELETNEICHavdLSVSNL 181
|
....*...
gi 15598092 171 ETVKSRFR 178
Cdd:PRK12544 182 NVLLYRAR 189
|
|
| PRK12512 |
PRK12512 |
RNA polymerase sigma factor; Provisional |
24-148 |
2.83e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171551 [Multi-domain] Cd Length: 184 Bit Score: 48.54 E-value: 2.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 24 GDSAAFEVLYQR---HRQGLYRFLCGLAGQ-TELADEIYQETWLS--LIRSESQPQgrASFRTWLYQIARNRLIDHWRKH 97
Cdd:PRK12512 19 GDAAAYRRLLKAvtpVLRAAARRGLARAGQpADQAEDIVQEILLAvhLKRHTWDPG--APFAPWLFAIARNKLIDALRRR 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 15598092 98 GQRQPLQ-DSYDEQLHAQPDQGAGPeqqlslSRDGERlqsALETLPEEQREV 148
Cdd:PRK12512 97 GRRVFVDiDDFAETLPAEPATETLP------AGDVGR---HLETLPPRQRDV 139
|
|
| Sigma70_r4 |
pfam04545 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
137-186 |
3.94e-07 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.
Pssm-ID: 461347 [Multi-domain] Cd Length: 50 Bit Score: 45.11 E-value: 3.94e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15598092 137 ALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRR 186
Cdd:pfam04545 1 ALASLPPRERQVLVLRYGEGLTLEEIGERLGISRERVRQIEKRALRKLRK 50
|
|
| PRK12530 |
PRK12530 |
RNA polymerase sigma factor; Provisional |
50-182 |
5.51e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237128 [Multi-domain] Cd Length: 189 Bit Score: 47.84 E-value: 5.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 50 QTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRKHGQRQPLQDSYDEQL--------------HAQP 115
Cdd:PRK12530 30 DADLAEDVVQEALVSAYKNADSFKGQSALKTWIFAILKNKIIDLIRYRKRFVNESELIEEDSpnsffdekghwkpeYYEP 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 116 DQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIAT---LTQSPLETVKSRFRYAVQ 182
Cdd:PRK12530 110 SEWQEVENTVYKEEFWLIFEACLNHLPAQQARVFMMREYLELSSEQICQecdISTSNLHVLLYRARLQLQ 179
|
|
| PRK12528 |
PRK12528 |
RNA polymerase sigma factor; Provisional |
26-183 |
8.10e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171561 [Multi-domain] Cd Length: 161 Bit Score: 46.76 E-value: 8.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 26 SAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQgRASFRTWLYQIARNRLIDHWRkhgqRQPLQD 105
Cdd:PRK12528 3 SATVEGLYSAHHHWLTGWLRRRLGCPQSAADLAQDTFVKVLVARETAQ-IIEPRAFLTTIAKRVLCNHYR----RQDLER 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15598092 106 SYDEQLHAQPDQGAGPEQQLSLSRDG-ERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQK 183
Cdd:PRK12528 78 AYLEALAQLPERVAPSEEERAIILETlVELDQLLDGLPPLVKRAFLLAQVDGLGYGEIATELGISLATVKRYLNKAAMR 156
|
|
| PRK12537 |
PRK12537 |
RNA polymerase sigma factor; Provisional |
14-185 |
9.42e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171568 [Multi-domain] Cd Length: 182 Bit Score: 47.08 E-value: 9.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 14 DETLLARYRkGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIR-SESQPQGRASFRTWLYQIARNRLID 92
Cdd:PRK12537 11 EACLLACAR-GDRRALQALYQQESARLLGVARRIVRDRALAEDIVHDAFIKIWTgAASFDPARGSARGWIYSVTRHLALN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 93 HWRKHGQRQPLQDSYDEQLHAQPDQGagpeQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLET 172
Cdd:PRK12537 90 VLRDTRREVVLDDDAEETAQTLHEII----DDFDLWANSGKIHRCLEQLEPARRNCILHAYVDGCSHAEIAQRLGAPLGT 165
|
170
....*....|...
gi 15598092 173 VKSRFRYAVQKLR 185
Cdd:PRK12537 166 VKAWIKRSLKALR 178
|
|
| PRK12527 |
PRK12527 |
RNA polymerase sigma factor; Reviewed |
34-163 |
2.21e-06 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 171560 [Multi-domain] Cd Length: 159 Bit Score: 45.54 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 34 QRHRQGLYRFLCGLAGQTELADEIYQETWLS-LIRSESQP--QGRAsfrtWLYQIARNRLIDHWRKHGQRQ--PLQDSYD 108
Cdd:PRK12527 2 ENYYRELVRFLSARLGNRQAAEDVAHDAYLRvLERSSSAQieHPRA----FLYRTALNLVVDRHRRHRVRQaePLEVLDE 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 15598092 109 EQLHAQPdqgaGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIA 163
Cdd:PRK12527 78 EERLHSP----SPQTRLDLGQRLALLQRALAELPPACRDSFLLRKLEGLSHQQIA 128
|
|
| PRK12542 |
PRK12542 |
RNA polymerase sigma factor; Provisional |
25-189 |
2.76e-06 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183581 [Multi-domain] Cd Length: 185 Bit Score: 45.81 E-value: 2.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 25 DSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRAS--FRTWLYQIARNRLIDHWRKHGQRQP 102
Cdd:PRK12542 7 DYEKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHSLNTqeLKRYILRVAKNKAIDSYRKNKRHET 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 103 LQDSYDEQLHAQPDQGAGPEQQLSLSRdgERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQ 182
Cdd:PRK12542 87 FLEEYERESIEAVDENIEEWEKRKMSE--VQIDTLLKELNESNRQVFKYKVFYNLTYQEISSVMGITEANVRKQFERARK 164
|
....*..
gi 15598092 183 KLRRLLA 189
Cdd:PRK12542 165 RVQNMIG 171
|
|
| PRK12536 |
PRK12536 |
RNA polymerase sigma factor; Provisional |
16-166 |
2.82e-06 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237131 [Multi-domain] Cd Length: 181 Bit Score: 45.81 E-value: 2.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 16 TLLARYRKGDSAAFEVLYQ---RHRQG-LYRFLCGLAGQTEladEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLI 91
Cdd:PRK12536 10 ALLLRGLAGDAAAYRQFLSelaAHLRGfLRRRLPQLPDEVE---DLVQEILLAVHNARHTYRADQPLTAWVHAIARYKLM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 92 DHWRKHGQRQPLQDSYDE--QLHAQPDQGAGPEQqlslsRDGERLqsaLETLPEEQRevfLMRAHGELE---LAEIATLT 166
Cdd:PRK12536 87 DFLRSRARREALHDPLDDesELFATSDDEAAEAR-----RDLGKL---LEQLPDRQR---LPIVHVKLEglsVAETAQLT 155
|
|
| PRK12511 |
PRK12511 |
RNA polymerase sigma factor; Provisional |
54-186 |
1.59e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237123 [Multi-domain] Cd Length: 182 Bit Score: 43.62 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 54 ADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRkhgQRQPLQDSYDEQLHAQPDQ-GAGPEQQLSLSRdge 132
Cdd:PRK12511 31 AEDLVHDALVRALERRASFRSGGNLRTWLMSILHNAFIDELR---RRRVEARRADELAVLADASlPAAQEHAVRLAQ--- 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 15598092 133 rLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRR 186
Cdd:PRK12511 105 -IRDAFFDLPEEQRAALHLVAIEGLSYQEAAAVLGIPIGTLMSRIGRARAALRA 157
|
|
| PRK12545 |
PRK12545 |
RNA polymerase factor sigma-70; |
37-191 |
2.81e-05 |
|
RNA polymerase factor sigma-70;
Pssm-ID: 183584 [Multi-domain] Cd Length: 201 Bit Score: 43.02 E-value: 2.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 37 RQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRLIDHWRKHGQ----------------- 99
Cdd:PRK12545 18 RHDLLRFARLQLRDADAAEDAVQEALAAAWSQAGRFAGQSAHKTWVFGILRNKLIDTLRARQRtvnlsaldaeldgeall 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 100 -RQPLQDSYDEQLHAQPDQGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFR 178
Cdd:PRK12545 98 dRELFKDNGHWAAHAKPRPWPKPETILQQQQFWTLFETCLDHLPEQIGRVFMMREFLDFEIDDICTELTLTANHCSVLLY 177
|
170
....*....|...
gi 15598092 179 YAVQKLRRLLAEE 191
Cdd:PRK12545 178 RARTRLRTCLSEK 190
|
|
| Sigma70_ECF |
pfam07638 |
ECF sigma factor; These proteins are probably RNA polymerase sigma factors belonging to the ... |
17-188 |
3.60e-05 |
|
ECF sigma factor; These proteins are probably RNA polymerase sigma factors belonging to the extra-cytoplasmic function (ECF) subfamily and show sequence similarity to pfam04542 and pfam04545.
Pssm-ID: 254323 [Multi-domain] Cd Length: 185 Bit Score: 42.41 E-value: 3.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 17 LLARYRKGDSAAFEVLYQRHRQGLYR----FLCGL-AGQTELADEIYQETWLSLIRSESQP--QGRASFRTWLYQIARNR 89
Cdd:pfam07638 7 LLQQVKDGDAAATEQLLPLVYDELRRlagsKLQNErRGHTLQPTALVHEAFVRLVDTEDFPdwSGRGHFFAAAAEAMRRI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 90 LIDHWRKHGQRQPLQDSYDEQLHAQPDQGAGPEQQLSLSRDGERLQsaLETLPEEQREVFLMRAHGELELAEIATLTQSP 169
Cdd:pfam07638 87 LIDHARRRQRQKRGGDVQRRELDEVVDNGDSPNPDLLLDLDEALEQ--LFSLSPRQARLVELRFFAGLSNDEIAERLGVS 164
|
170
....*....|....*....
gi 15598092 170 LETVKSRFRYAVQKLRRLL 188
Cdd:pfam07638 165 ERTVERNWALARAWLHREL 183
|
|
| PRK12529 |
PRK12529 |
RNA polymerase sigma factor; Provisional |
52-180 |
8.15e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183574 [Multi-domain] Cd Length: 178 Bit Score: 41.46 E-value: 8.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 52 ELADEIYQETWLSLI--RSESQPQGRASFRTWLYQIARNRLIDhWRKhgqRQPLQDSYDEQLHAQPD-QGAGPEQQLSLS 128
Cdd:PRK12529 40 GVADDLAHDIFLRILasRDGGQREAIRQPRAYLARIANCVLVS-WRR---RQSLELAWLEALATLPEpLHPSPEQQSVIL 115
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 15598092 129 RDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYA 180
Cdd:PRK12529 116 ETLHEIDALLDTLRPRVKQAFLMATLDGMKQKDIAQALDIALPTVKKYIHQA 167
|
|
| FliA |
COG1191 |
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA ... |
106-190 |
1.27e-04 |
|
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440804 [Multi-domain] Cd Length: 236 Bit Score: 41.35 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 106 SYDEQLHAQPD-----QGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGEL---ELAEIATLTQSpleTVkSRF 177
Cdd:COG1191 147 SLDEPLEDGDDlldllESGDPEEELEHEELREALAEAIEQLPERERLVLSLYYFEELtlkEIAEVLGVSES---RV-SRL 222
|
90
....*....|....
gi 15598092 178 R-YAVQKLRRLLAE 190
Cdd:COG1191 223 HkKALARLREYLKE 236
|
|
| PRK12523 |
PRK12523 |
RNA polymerase sigma factor; Reviewed |
32-163 |
2.32e-04 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 183572 [Multi-domain] Cd Length: 172 Bit Score: 40.22 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 32 LYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQPQGRASfRTWLYQIARNRLIDHWRkhgqRQPLQDSYDEQL 111
Cdd:PRK12523 15 LYRDHRGWLLAWLRRNVACRQRAEDLSQDTFVRLLGRPELPTPREP-RAFLAAVAKGLMFDHFR----RAALEQAYLAEL 89
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 15598092 112 HAQPD-QGAGPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIA 163
Cdd:PRK12523 90 ALVPEaEQPSPEEQHLILEDLKAIDRLLGKLSSKARAAFLYNRLDGMGHAEIA 142
|
|
| PRK12525 |
PRK12525 |
RNA polymerase sigma factor; Provisional |
38-190 |
4.76e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139037 [Multi-domain] Cd Length: 168 Bit Score: 39.16 E-value: 4.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 38 QGLYRFLCG----LAGQTELADEIYQETWLSLIrSESQPQGRASFRTWLYQIARNRLIDHWRkhgqRQPLQDSYDEQLHA 113
Cdd:PRK12525 16 QQDYDWLCKklsrQLGCPHSAEDIASETFLQVL-ALPDPASIREPRALLTTIARRLMYEGWR----RQDLERAYLQSLAE 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15598092 114 QPDQGA-GPEQQLSLSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRRLLAE 190
Cdd:PRK12525 91 APEAVQpSPEEQWMVIETLLAIDRLLDGLSGKARAAFLMSQLEGLTYVEIGERLGVSLSRIHQYMVEAFKCCYQGFQE 168
|
|
| PRK12539 |
PRK12539 |
RNA polymerase sigma factor SigF; |
15-146 |
1.73e-03 |
|
RNA polymerase sigma factor SigF;
Pssm-ID: 237132 [Multi-domain] Cd Length: 184 Bit Score: 37.79 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598092 15 ETLLARYRKGDSAAFEVLYQR---HRQGLYRFLCGLAGQT-ELADEIYQETWLSLIRSESQPQGRASFRTWLYQIARNRL 90
Cdd:PRK12539 9 KALMLASLDGDAAAHRALLERlsgHLRAYYKGKLARIGRGaEEAEDLVQEALMAIHTRRHTYDPEQPLTPWVYAIARYKL 88
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 15598092 91 IDHWRK-HGQRQPLQDSYDEQLHAQPDQgAGPEQQLSLSRdgerlqsALETLPEEQR 146
Cdd:PRK12539 89 IDHLRRtRASLADVPIDDADELVAHDDH-AAVESTLDLGR-------LLARLPEKMR 137
|
|
| PRK06930 |
PRK06930 |
positive control sigma-like factor; Validated |
121-186 |
7.30e-03 |
|
positive control sigma-like factor; Validated
Pssm-ID: 180757 [Multi-domain] Cd Length: 170 Bit Score: 35.86 E-value: 7.30e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15598092 121 PEQQLSlSRDGERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRR 186
Cdd:PRK06930 96 PESVIS-EWDKIRIEDALSVLTEREKEVYLMHRGYGLSYSEIADYLNIKKSTVQSMIERAEKKIAR 160
|
|
| |
