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Conserved domains on  [gi|15598405|ref|NP_251899|]
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hypothetical protein PA3209 [Pseudomonas aeruginosa PAO1]

Protein Classification

YkgJ family cysteine cluster protein( domain architecture ID 10002295)

YkgJ family cysteine cluster protein similar to Escherichia coli YkgJ, containing a conserved cysteine motif (CxxCxxCC) which might chelate iron or zinc ions

Gene Ontology:  GO:0046872|GO:0051536

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YkgJ COG0727
Uncharacterized protein YkgJ, contains CxxCxxCC motif [General function prediction only];
4-105 1.34e-16

Uncharacterized protein YkgJ, contains CxxCxxCC motif [General function prediction only];


:

Pssm-ID: 440491  Cd Length: 120  Bit Score: 69.85  E-value: 1.34e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598405   4 DNPCLTCGACCAHFRVSFYWGECrsagGVVPDELTVRISPQM-----VAMSGTENKpaRCVGLLGEvgcGVRCTVYEQRS 78
Cdd:COG0727   8 RFPCLGCGACCRGFRVSLTPAEI----GRLAKHLGLSPEEFLerylrYVLKGTEDG--RCVFLDGE---TRRCSIYEVRP 78

                        90       100       110
                ....*....|....*....|....*....|..
gi 15598405  79 STCREFEAAWANG-----QPNPACDAARAAYG 105
Cdd:COG0727  79 SACREFPFVFEDGfgktlKGDEACPGARARHG 110
 
Name Accession Description Interval E-value
YkgJ COG0727
Uncharacterized protein YkgJ, contains CxxCxxCC motif [General function prediction only];
4-105 1.34e-16

Uncharacterized protein YkgJ, contains CxxCxxCC motif [General function prediction only];


Pssm-ID: 440491  Cd Length: 120  Bit Score: 69.85  E-value: 1.34e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598405   4 DNPCLTCGACCAHFRVSFYWGECrsagGVVPDELTVRISPQM-----VAMSGTENKpaRCVGLLGEvgcGVRCTVYEQRS 78
Cdd:COG0727   8 RFPCLGCGACCRGFRVSLTPAEI----GRLAKHLGLSPEEFLerylrYVLKGTEDG--RCVFLDGE---TRRCSIYEVRP 78

                        90       100       110
                ....*....|....*....|....*....|..
gi 15598405  79 STCREFEAAWANG-----QPNPACDAARAAYG 105
Cdd:COG0727  79 SACREFPFVFEDGfgktlKGDEACPGARARHG 110
CxxCxxCC pfam03692
Putative zinc- or iron-chelating domain; This family of proteins contains 8 conserved ...
 6-98 2.03e-10

Putative zinc- or iron-chelating domain; This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.


Pssm-ID: 308985  Cd Length: 85  Bit Score: 53.01  E-value: 2.03e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598405     6 PCLTCGACCAhfrvsfywgecrSAGGVVPDELTVRISPQMVAMSGTENKPA-----RCVGLLGEVGcgvRCTVYEQRSST 80
Cdd:pfam03692   1 LCDGCGACCK------------ALGIKLTDEDTERLAPTGVAEEDEDLEEYvkvdgRCVFLDEETC---LCSIYEERPLC 65

                          90       100
                  ....*....|....*....|
gi 15598405    81 CREFEAA--WANGQPNPACD 98
Cdd:pfam03692  66 CRLFPFSniEEFGWLPETCP 85
 
Name Accession Description Interval E-value
YkgJ COG0727
Uncharacterized protein YkgJ, contains CxxCxxCC motif [General function prediction only];
4-105 1.34e-16

Uncharacterized protein YkgJ, contains CxxCxxCC motif [General function prediction only];


Pssm-ID: 440491  Cd Length: 120  Bit Score: 69.85  E-value: 1.34e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598405   4 DNPCLTCGACCAHFRVSFYWGECrsagGVVPDELTVRISPQM-----VAMSGTENKpaRCVGLLGEvgcGVRCTVYEQRS 78
Cdd:COG0727   8 RFPCLGCGACCRGFRVSLTPAEI----GRLAKHLGLSPEEFLerylrYVLKGTEDG--RCVFLDGE---TRRCSIYEVRP 78

                        90       100       110
                ....*....|....*....|....*....|..
gi 15598405  79 STCREFEAAWANG-----QPNPACDAARAAYG 105
Cdd:COG0727  79 SACREFPFVFEDGfgktlKGDEACPGARARHG 110
CxxCxxCC pfam03692
Putative zinc- or iron-chelating domain; This family of proteins contains 8 conserved ...
 6-98 2.03e-10

Putative zinc- or iron-chelating domain; This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.


Pssm-ID: 308985  Cd Length: 85  Bit Score: 53.01  E-value: 2.03e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598405     6 PCLTCGACCAhfrvsfywgecrSAGGVVPDELTVRISPQMVAMSGTENKPA-----RCVGLLGEVGcgvRCTVYEQRSST 80
Cdd:pfam03692   1 LCDGCGACCK------------ALGIKLTDEDTERLAPTGVAEEDEDLEEYvkvdgRCVFLDEETC---LCSIYEERPLC 65

                          90       100
                  ....*....|....*....|
gi 15598405    81 CREFEAA--WANGQPNPACD 98
Cdd:pfam03692  66 CRLFPFSniEEFGWLPETCP 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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