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Conserved domains on  [gi|15598639|ref|NP_252133|]
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ABC transporter permease [Pseudomonas aeruginosa PAO1]

Protein Classification

ABC transporter permease( domain architecture ID 30)

ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TM_PBP2 super family cl00427
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 4-258 7.88e-138

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


The actual alignment was detected with superfamily member PRK11365:

Pssm-ID: 444901  Cd Length: 263  Bit Score: 388.52  E-value: 7.88e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639    4 SKRLAERLAPWALPLVLLAVWQAAVEFGWLSSRILPAPSAVLEAGWALLRSGEIWQHLAISGWRAAIGFLIGGAIGLVLG 83
Cdd:PRK11365   5 VKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRALIGFSIGGSLGLILG 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639   84 FVTGLSKWGERFLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYLNTYHGIRGIDPGLLEMARSYGLS 163
Cdd:PRK11365  85 LISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLS 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  164 GFALFRQVILPGALPSILVGVRFALGFMWLTLIVAETISASSGIGYLAMNAREFLQTDVVVLAILLYAVLGKLADLAARG 243
Cdd:PRK11365 165 GIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQL 244

                        250
                 ....*....|....*
gi 15598639  244 LERVWLRWHPAYQVK 258
Cdd:PRK11365 245 LERLWLRWNPAYHLK 259
 
Name Accession Description Interval E-value
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
4-258 7.88e-138

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 388.52  E-value: 7.88e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639    4 SKRLAERLAPWALPLVLLAVWQAAVEFGWLSSRILPAPSAVLEAGWALLRSGEIWQHLAISGWRAAIGFLIGGAIGLVLG 83
Cdd:PRK11365   5 VKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRALIGFSIGGSLGLILG 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639   84 FVTGLSKWGERFLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYLNTYHGIRGIDPGLLEMARSYGLS 163
Cdd:PRK11365  85 LISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLS 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  164 GFALFRQVILPGALPSILVGVRFALGFMWLTLIVAETISASSGIGYLAMNAREFLQTDVVVLAILLYAVLGKLADLAARG 243
Cdd:PRK11365 165 GIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQL 244

                        250
                 ....*....|....*
gi 15598639  244 LERVWLRWHPAYQVK 258
Cdd:PRK11365 245 LERLWLRWNPAYHLK 259
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 2-252 1.09e-86

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 258.15  E-value: 1.09e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639   2 SISKRLAERLAPWALPLVLLAVWQAAVEFGWLSSRILPAPSAVLEAGWALLRSGEIWQHLAISGWRAAIGFLIGGAIGLV 81
Cdd:COG0600   4 STRRRLRRLLLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVELLASGELWEHLLASLLRVLLGFALAALLGVP 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  82 LGFVTGLSKWGERFLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYLNTYHGIRGIDPGLLEMARSYG 161
Cdd:COG0600  84 LGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLG 163

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639 162 LSGFALFRQVILPGALPSILVGVRFALGFMWLTLIVAETISASSGIGYLAMNAREFLQTDVVVLAILLYAVLGKLADLAA 241
Cdd:COG0600 164 ASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLL 243

                       250
                ....*....|.
gi 15598639 242 RGLERVWLRWH 252
Cdd:COG0600 244 RLLERRLLRWR 254
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 79-246 5.03e-17

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 76.57  E-value: 5.03e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639    79 GLVLGFVTGL--SKWGERFLDSSVQMIRNVPHLALIPLVIL-----WFGIDESAKIFLVALGTLFPIYLNTYHGIRGIDP 151
Cdd:pfam00528   1 GIPLGIIAALrrGRRLDRLLRPLIDLLQALPSFVLAILLVViailsILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639   152 GLLEMARSYGLSGFALFRQVILPGALPSILVGVRFALGFMWLTLIVAETISASSGIGYLAMNAREFLQTD----VVVLAI 227
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPeiqgPVLAAA 160

                         170
                  ....*....|....*....
gi 15598639   228 LLYAVLGKLADLAARGLER 246
Cdd:pfam00528 161 LILLLLNLLVDILQRLLDP 179
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 61-236 1.09e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.99  E-value: 1.09e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  61 LAISGWRAAIGFLIGGAIGLVLGFVTGLS-KWGERFLDSSVQMIRNVPHLALIPLVILWFGIDESAKIF---------LV 130
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKrGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglglpaliLA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639 131 ALGTLFPIYLNTYHGIRGIDPGLLEMARSYGLSGFALFRQVILPGALPSILVGVRFALGFMWLTLIVAETISASS----G 206
Cdd:cd06261  81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEapgpG 160

                       170       180       190
                ....*....|....*....|....*....|
gi 15598639 207 IGYLAMNAREFLQTDVVVLAILLYAVLGKL 236
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
4-258 7.88e-138

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 388.52  E-value: 7.88e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639    4 SKRLAERLAPWALPLVLLAVWQAAVEFGWLSSRILPAPSAVLEAGWALLRSGEIWQHLAISGWRAAIGFLIGGAIGLVLG 83
Cdd:PRK11365   5 VKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRALIGFSIGGSLGLILG 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639   84 FVTGLSKWGERFLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYLNTYHGIRGIDPGLLEMARSYGLS 163
Cdd:PRK11365  85 LISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLS 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  164 GFALFRQVILPGALPSILVGVRFALGFMWLTLIVAETISASSGIGYLAMNAREFLQTDVVVLAILLYAVLGKLADLAARG 243
Cdd:PRK11365 165 GIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQL 244

                        250
                 ....*....|....*
gi 15598639  244 LERVWLRWHPAYQVK 258
Cdd:PRK11365 245 LERLWLRWNPAYHLK 259
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 2-252 1.09e-86

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 258.15  E-value: 1.09e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639   2 SISKRLAERLAPWALPLVLLAVWQAAVEFGWLSSRILPAPSAVLEAGWALLRSGEIWQHLAISGWRAAIGFLIGGAIGLV 81
Cdd:COG0600   4 STRRRLRRLLLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVELLASGELWEHLLASLLRVLLGFALAALLGVP 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  82 LGFVTGLSKWGERFLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYLNTYHGIRGIDPGLLEMARSYG 161
Cdd:COG0600  84 LGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLG 163

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639 162 LSGFALFRQVILPGALPSILVGVRFALGFMWLTLIVAETISASSGIGYLAMNAREFLQTDVVVLAILLYAVLGKLADLAA 241
Cdd:COG0600 164 ASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLL 243

                       250
                ....*....|.
gi 15598639 242 RGLERVWLRWH 252
Cdd:COG0600 244 RLLERRLLRWR 254
PRK10160 PRK10160
taurine ABC transporter permease TauC;
18-256 4.90e-43

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 147.24  E-value: 4.90e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639   18 LVLLAVWQAAVEFGWLSSRILPAPSAVLEAGWAL-----LRSGEIWQHLAISGWRAAIGFLIGGAIGLVLGFVTGLSKWG 92
Cdd:PRK10160  32 AVLLAVWWAVAALQLISPLFLPPPQQVLAKLLTIagpqgFMDATLWQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTV 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639   93 ERFLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYLNTYHGIRGIDPGLLEMARSYGLSGFALFRQVI 172
Cdd:PRK10160 112 RGILDPLIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVI 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  173 LPGALPSILVGVRFALGFMWLTLIVAETISASSGIGYLAMNAREFLQTDVVVLAILLYAVLGKLADLAARGLERVWLRWH 252
Cdd:PRK10160 192 LPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTPWH 271


                 ....
gi 15598639  253 PAYQ 256
Cdd:PRK10160 272 GEVQ 275
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 57-251 4.99e-20

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 85.11  E-value: 4.99e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  57 IWQHLAISgwraAIGFLIGGAIGLVLGFVTGLSKWGERFLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLF 136
Cdd:COG1174  20 LLEHLLLV----LLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIALVLYALL 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639 137 PIYLNTYHGIRGIDPGLLEMARSYGLSGFALFRQVILPGALPSILVGVRFALGFMWLTLIVAETISAsSGIGYLAMNARE 216
Cdd:COG1174  96 PILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGA-GGLGDLIFDGLQ 174

                       170       180       190
                ....*....|....*....|....*....|....*
gi 15598639 217 FLQTDVVVLAILLYAVLGKLADLAARGLERVWLRW 251
Cdd:COG1174 175 LNNTALILAGAILVALLALLVDLLLALLERLLTPR 209
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 79-246 5.03e-17

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 76.57  E-value: 5.03e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639    79 GLVLGFVTGL--SKWGERFLDSSVQMIRNVPHLALIPLVIL-----WFGIDESAKIFLVALGTLFPIYLNTYHGIRGIDP 151
Cdd:pfam00528   1 GIPLGIIAALrrGRRLDRLLRPLIDLLQALPSFVLAILLVViailsILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639   152 GLLEMARSYGLSGFALFRQVILPGALPSILVGVRFALGFMWLTLIVAETISASSGIGYLAMNAREFLQTD----VVVLAI 227
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPeiqgPVLAAA 160

                         170
                  ....*....|....*....
gi 15598639   228 LLYAVLGKLADLAARGLER 246
Cdd:pfam00528 161 LILLLLNLLVDILQRLLDP 179
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 61-236 1.09e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.99  E-value: 1.09e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  61 LAISGWRAAIGFLIGGAIGLVLGFVTGLS-KWGERFLDSSVQMIRNVPHLALIPLVILWFGIDESAKIF---------LV 130
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKrGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglglpaliLA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639 131 ALGTLFPIYLNTYHGIRGIDPGLLEMARSYGLSGFALFRQVILPGALPSILVGVRFALGFMWLTLIVAETISASS----G 206
Cdd:cd06261  81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEapgpG 160

                       170       180       190
                ....*....|....*....|....*....|
gi 15598639 207 IGYLAMNAREFLQTDVVVLAILLYAVLGKL 236
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 57-233 4.09e-07

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 49.28  E-value: 4.09e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  57 IWQHLAISGWRAAIGFLIGGAIGLVLgFVT---GL--SKWGERFLDSSVQMIRNVPHL----ALIPLVILWFG--IDESA 125
Cdd:COG2011  16 TGETLYMVGVSTLIAVLLGLPLGVLL-VLTrpgGLlpNPVLYRVLGVIVNIFRSIPFIillvALIPLTRLIVGtsIGTTA 94

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639 126 KIFLVALGTLFPIYLNTYHGIRGIDPGLLEMARSYGLSGFALFRQVILPGALPSILVGVRFALgfmwLTLI----VAETI 201
Cdd:COG2011  95 AIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTL----ISLIgysaMAGAV 170

                       170       180       190
                ....*....|....*....|....*....|....
gi 15598639 202 SAsSGIGYLAMNA--REFlQTDVVVLAILLYAVL 233
Cdd:COG2011 171 GG-GGLGDLAIRYgyQRF-DTDVMLVTVVILIVL 202
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 62-202 4.82e-07

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 50.23  E-value: 4.82e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  62 AISGWRAAIGFLIGGAIGLVLGFVTGLSKWGERFLDSSVQMIRNVPHLALIPLVILW---FGID-ESAKIFLVALGTLFP 137
Cdd:COG4986 372 LLTLLRVVVLIALASLIWVPVGVWIGLRPRLARRLQPVAQFLASFPANLLFPVAVLLivrFGLNpNIWLSPLMILGTQWY 451

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15598639 138 IYLNTYHGIRGIDPGLLEMARSYGLSGFALFRQVILPGALPSILVGVRFALGFMWLTLIVAETIS 202
Cdd:COG4986 452 ILFNVIAGASAIPNDLREAARNFGLRGWLWWRRLILPGIFPYYVTGAITASGGAWNASIVAEYVS 516
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
111-229 3.20e-05

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 44.31  E-value: 3.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  111 LIPLVILwFGIDESAKIFLVALGTLFPIYLNTYHGIRGIDPGLLEMARSYGLSGFALFRQVILPGALPSILVGVRFALGF 190
Cdd:PRK10952 197 LVPIVML-FGIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLML 275

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 15598639  191 MWLTLIVAETISASS-------GIGYLAMNAREFLQTDVVVLAILL 229
Cdd:PRK10952 276 ALSMVVIASMIAVGGlgqmvlrGIGRLDMGLATVGGVGIVILAIIL 321
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 72-181 1.68e-04

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 41.60  E-value: 1.68e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  72 FLIGGAIGLVLGFVTGL-----SKWGERFLDSSVQMIRNVPhlALIPLVILWF-----GIDESAkiFLVALGTLFpIYLN 141
Cdd:COG0765  26 TVLAIVLGLVLGLLLALarlspNPVLRWLATAYVEFFRGTP--LLVQLFFIYFglpllGIDLSP--FVAAVIALT-LNSA 100

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 15598639 142 TYH------GIRGIDPGLLEMARSYGLSGFALFRQVILPGALPSIL 181
Cdd:COG0765 101 AYLaeivraGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIIL 146
PRK15069 PRK15069
histidine ABC transporter permease HisM;
146-177 3.20e-04

histidine ABC transporter permease HisM;


Pssm-ID: 185029 [Multi-domain]  Cd Length: 234  Bit Score: 40.80  E-value: 3.20e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 15598639  146 IRGIDPGLLEMARSYGLSGFALFRQVILPGAL 177
Cdd:PRK15069 125 IRSVPHGEIEAARAYGMSTFKLYRRIILPSAL 156
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-191 5.91e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 40.91  E-value: 5.91e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639   1 MSISKRLAERLApWALPLVLLAVWqAAVEFGWLssrILPAPSAVLEAGWALLRSGEIWQHLAISGWRAAIGFLIGGAIGL 80
Cdd:COG1178   1 MSTRPRRRPRLL-LLLLALLLALL-VLLPLLAL---LLRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGV 75

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  81 VLGFVTGLSK-WGERFLDSsvqmirnvphLALIPLVI------------------------LWFGIDES-----AKIFLV 130
Cdd:COG1178  76 PLAWLLARTDfPGRRLLRW----------LLLLPLALppyvvalawialfgpngllntllrALFGLEPPdiyglGGIILV 145

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15598639 131 ALGTLFP-IYLNTYHGIRGIDPGLLEMARSYGLSGFALFRQVILPGALPSILVGvrFALGFM 191
Cdd:COG1178 146 LVLFNYPyVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAG--ALLVFL 205
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
10-191 9.34e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 40.14  E-value: 9.34e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  10 RLAPWALPLVLLAVWQAAVEFG-------WLSSRILPAPSAVLEAGWALLRSGEIWQHLAISGWRAAIGFLIGGAIGLVL 82
Cdd:COG1178 282 KLGRWRWLALALCLLLVLLGLLlpllallLWSLTKALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLL 361

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  83 GFVTGLSK-WGERFLDSSVQMIRNVPH----LALIPLVILWFGIDESAKIFLVALGTL---FPI-YLNTYHGIRGIDPGL 153
Cdd:COG1178 362 AYLVRRRRgRLARLLDRLAMLPYAVPGivlgLGLLLLFNRPLPLLLYGTLAILVLAYVvrfLPFaLRSLEAALAQIDPSL 441

                       170       180       190
                ....*....|....*....|....*....|....*...
gi 15598639 154 LEMARSYGLSGFALFRQVILPGALPSILVGvrFALGFM 191
Cdd:COG1178 442 EEAARSLGASPLRTLRRVTLPLLRPGLLAA--ALLVFV 477
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
49-212 2.22e-03

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 38.18  E-value: 2.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639   49 WALLRSgeIWQHLAISGWRAAIGFLIGGAIGlVLGFVTGLSKWGE-----RFLDSSVQMIRNVPHLAL----IPL--VIL 117
Cdd:PRK10782   7 WLLVRG--VWETLAMTFVSGFFGFVIGLPVG-VLLYVTRPGQIIAnaklyRTLSALVNIFRSIPFIILlvwmIPFtrVIV 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  118 WFGIDESAKIFLVALGTLFPIYLNTYHGIRGIDPGLLEMARSYGLSGFALFRQVILPGALPSilvgvrfalgfmwltLIV 197
Cdd:PRK10782  84 GTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPG---------------LVN 148

                        170
                 ....*....|....*
gi 15598639  198 AETISASSGIGYLAM 212
Cdd:PRK10782 149 AATITLITLVGYSAM 163
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 146-183 5.44e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 37.27  E-value: 5.44e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 15598639  146 IRGIDPGLLEMARSYGLSGFALFRQVILPGALPSILVG 183
Cdd:PRK09500 150 LKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAG 187
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 149-183 5.71e-03

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 37.29  E-value: 5.71e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 15598639  149 IDPGLLEMARSYGLSGFALFRQVILPGALPSILVG 183
Cdd:PRK15050 187 LDARQLEAAASLGASPWRVARRVILPEAWPALAAG 221
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 56-240 7.08e-03

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 37.35  E-value: 7.08e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639  56 EIWQHLAISGWRAAIGFLIGGAIGLVLGFVTGL--SKWGERFLDSSVQMIRNVPHLALIPLVILWFGI-----------D 122
Cdd:COG0601  90 LIAERLPVTLELALLALLLALLIGIPLGILAALrrGSWLDRLITVLALLGISIPSFWLGLLLILLFAVklgwlpvsgrvS 169

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598639 123 ESAKIFLVALGTLFPI----YLNTYHGIRGIDPGLLE--------MARSYGLSGFALFRQVILPGALPSILVGVRFALGF 190
Cdd:COG0601 170 PWEDFLDALRHLILPAltlaLGSLAGIARLTRSSMLEvlgqdyvrTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGG 249

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*
gi 15598639 191 MWLTLIVAETISASSGIGYLAMNA---REF--LQTdVVVLAILLYAVLGKLADLA 240
Cdd:COG0601 250 LLGGAVVVETVFSWPGLGRLLVDAilnRDYpvVQG-IVLLIAVLVVLVNLLVDLL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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